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protocols::hybridization::CartesianSampler Member List

This is the complete list of members for protocols::hybridization::CartesianSampler, including all inherited members.

apply(core::pose::Pose &pose) overrideprotocols::hybridization::CartesianSamplervirtual
apply_constraints(core::pose::Pose &pose)protocols::hybridization::CartesianSamplerprotected
apply_fragcsts(core::pose::Pose &working_frag, core::pose::Pose const &pose, core::Size start)protocols::hybridization::CartesianSamplerprotected
apply_frame(core::pose::Pose &pose, core::fragment::Frame &frame)protocols::hybridization::CartesianSampler
apply_transform(core::pose::Pose &frag, core::Vector const &preT, core::Vector const &postT, numeric::xyzMatrix< core::Real > const &R)protocols::hybridization::CartesianSamplerprotected
automode_scorecut_protocols::hybridization::CartesianSamplerprivate
bbmove_protocols::hybridization::CartesianSamplerprivate
CartesianSampler()protocols::hybridization::CartesianSampler
CartesianSampler(utility::vector1< core::fragment::FragSetOP > fragments_in)protocols::hybridization::CartesianSampler
clear_info()protocols::moves::Moverinlinevirtual
clone() const overrideprotocols::hybridization::CartesianSamplervirtual
compute_fragment_bias(core::pose::Pose &pose)protocols::hybridization::CartesianSamplerprotected
create()protocols::moves::Movervirtual
cumulate_prob_protocols::hybridization::CartesianSamplerprivate
current_job_protocols::moves::Moverprivate
current_tag_protocols::moves::Moverprivate
debug_protocols::hybridization::CartesianSamplerprivate
exclude_residues_protocols::hybridization::CartesianSamplerprivate
fa_scorefxn_protocols::hybridization::CartesianSamplerprivate
force_ss_protocols::hybridization::CartesianSamplerprivate
frag_bias_protocols::hybridization::CartesianSamplerprivate
frag_sizes_protocols::hybridization::CartesianSamplerprivate
fragment_bias_strategies_protocols::hybridization::CartesianSamplerprivate
fragments_protocols::hybridization::CartesianSamplerprivate
freeze_endpoints_protocols::hybridization::CartesianSamplerprivate
fresh_instance() const overrideprotocols::hybridization::CartesianSamplervirtual
fullatom_protocols::hybridization::CartesianSamplerprivate
get_additional_output()protocols::moves::Movervirtual
get_current_job() constprotocols::moves::Mover
get_current_tag() constprotocols::moves::Moverinline
get_input_pose() constprotocols::moves::Mover
get_last_move_status() constprotocols::moves::Mover
get_name() const overrideprotocols::hybridization::CartesianSamplervirtual
get_native_pose() constprotocols::moves::Mover
get_self_ptr() constprotocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() constprotocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_transform(core::pose::Pose const &pose, core::pose::Pose const &frag, core::Size startpos, core::Vector &preT, core::Vector &postT, numeric::xyzMatrix< core::Real > &R)protocols::hybridization::CartesianSamplerprotected
get_type() constprotocols::moves::Moverinline
include_residues_protocols::hybridization::CartesianSamplerprivate
info()protocols::moves::Moverinlinevirtual
info() constprotocols::moves::Moverinlinevirtual
info_protocols::moves::Moverprivate
init()protocols::hybridization::CartesianSampler
input_as_ref_protocols::hybridization::CartesianSamplerprivate
input_pose_protocols::moves::Moverprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
last_status_protocols::moves::Moverprivate
library_protocols::hybridization::CartesianSamplerprivate
loops_protocols::hybridization::CartesianSamplerprivate
mc_scorefxn_protocols::hybridization::CartesianSamplerprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
mover_name()protocols::hybridization::CartesianSamplerstatic
name()protocols::moves::Moverinlinestatic
native_pose_protocols::moves::Moverprivate
ncycles_protocols::hybridization::CartesianSamplerprivate
nfrags_protocols::hybridization::CartesianSamplerprivate
nminsteps_protocols::hybridization::CartesianSamplerprivate
overlap_protocols::hybridization::CartesianSamplerprivate
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) overrideprotocols::hybridization::CartesianSamplervirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) constprotocols::moves::Movervirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::hybridization::CartesianSamplerstatic
recover_low_protocols::hybridization::CartesianSamplerprivate
ref_cst_maxdist_protocols::hybridization::CartesianSamplerprivate
ref_cst_weight_protocols::hybridization::CartesianSamplerprivate
ref_model_protocols::hybridization::CartesianSamplerprivate
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() constprotocols::moves::Movervirtual
reinitialize_for_new_input() constprotocols::moves::Movervirtual
reset_status()protocols::moves::Mover
residues_to_exclude_protocols::hybridization::CartesianSamplerprivate
residues_to_include_protocols::hybridization::CartesianSamplerprivate
restore_csts_protocols::hybridization::CartesianSamplerprivate
rms_cutoff_protocols::hybridization::CartesianSamplerprivate
rsd_wdw_to_refine_protocols::hybridization::CartesianSamplerprivate
score_threshold_protocols::hybridization::CartesianSamplerprivate
scorefxn_protocols::hybridization::CartesianSamplerprivate
selection_bias_protocols::hybridization::CartesianSamplerprivate
set_bbmove(bool bbmove_in)protocols::hybridization::CartesianSamplerinline
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_fa_scorefunction(core::scoring::ScoreFunctionOP scorefxn_in)protocols::hybridization::CartesianSamplerinline
set_frag_sizes(utility::vector1< core::Size > const &frag_sizes_in)protocols::hybridization::CartesianSamplerinline
set_fullatom(bool fullatom_in)protocols::hybridization::CartesianSamplerinline
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_mc_scorefunction(core::scoring::ScoreFunctionOP scorefxn_in)protocols::hybridization::CartesianSamplerinline
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_ncycles(core::Size ncycles_in)protocols::hybridization::CartesianSamplerinline
set_nfrags(core::Size nfrags_in)protocols::hybridization::CartesianSamplerinline
set_nminsteps(core::Size nminsteps_in)protocols::hybridization::CartesianSamplerinline
set_overlap(core::Size overlap_in)protocols::hybridization::CartesianSamplerinline
set_restore_csts(bool restore_csts_in)protocols::hybridization::CartesianSamplerinline
set_rms_cutoff(core::Real rms_cutoff_in)protocols::hybridization::CartesianSamplerinline
set_scorefunction(core::scoring::ScoreFunctionOP scorefxn_in)protocols::hybridization::CartesianSamplerinline
set_strategy(std::string strategy_in)protocols::hybridization::CartesianSamplerinline
set_temp(core::Real temp_in)protocols::hybridization::CartesianSamplerinline
set_type(std::string const &setting)protocols::moves::Moverinline
set_userpos(core::select::residue_selector::ResidueSelectorCOP const &user_pos_in)protocols::hybridization::CartesianSamplerinline
show(std::ostream &output=std::cout) constprotocols::moves::Movervirtual
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
temp_protocols::hybridization::CartesianSamplerprivate
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type(const std::string &type_in)protocols::moves::Moverinline
type() constprotocols::moves::Moverinline
type_protocols::moves::Moverprivate
update_fragment_library_pointers()protocols::hybridization::CartesianSamplerprotected
user_pos_protocols::hybridization::CartesianSamplerprivate
wdw_to_freeze_protocols::hybridization::CartesianSamplerprivate