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Public Member Functions | Static Public Member Functions | Private Types | Private Attributes | List of all members
protocols::protein_interface_design::filters::Torsion Class Reference

#include <TorsionFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::Torsion:
Inheritance graph
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Public Member Functions

 Torsion ()
 default ctor More...
 
bool apply (core::pose::Pose const &pose) const override
 Constructor with a single target residue. More...
 
void report (std::ostream &out, core::pose::Pose const &pose) const override
 
core::Real report_sm (core::pose::Pose const &pose) const override
 used to report filter internals through a score or silent file More...
 
protocols::filters::FilterOP clone () const override
 
protocols::filters::FilterOP fresh_instance () const override
 
core::Real compute (core::pose::Pose const &pose) const
 
 ~Torsion () override
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
 Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
 
core::Real lower () const
 
void lower (core::Real const l)
 
core::Real upper () const
 
void upper (core::Real const u)
 
core::Size resnum (core::pose::Pose const &) const
 
void resnum (core::pose::ResidueIndexDescriptionCOP r)
 
void resnum (core::Size const r)
 
void torsion (std::string const &t)
 
std::string torsion () const
 
core::pack::task::TaskFactoryOP task_factory () const
 
void task_factory (core::pack::task::TaskFactoryOP tf)
 
void task_factory_set (bool const b)
 
bool task_factory_set () const
 
std::string name () const override
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
 ~Filter () override
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual bool filter_provides_citation_info () const
 Does this filter provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool filter_is_unpublished () const
 Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static std::string class_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Private Types

typedef protocols::filters::Filter parent
 

Private Attributes

core::Real lower_
 
core::Real upper_
 
core::pose::ResidueIndexDescriptionCOP resnum_
 
std::string torsion_
 
core::pack::task::TaskFactoryOP task_factory_
 
bool task_factory_set_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::Torsion::Torsion ( )

default ctor

protocols::protein_interface_design::filters::Torsion::~Torsion ( )
overridedefault

Member Function Documentation

bool protocols::protein_interface_design::filters::Torsion::apply ( core::pose::Pose const &  pose) const
overridevirtual
std::string protocols::protein_interface_design::filters::Torsion::class_name ( )
static
protocols::filters::FilterOP protocols::protein_interface_design::filters::Torsion::clone ( ) const
overridevirtual
core::Real protocols::protein_interface_design::filters::Torsion::compute ( core::pose::Pose const &  pose) const
protocols::filters::FilterOP protocols::protein_interface_design::filters::Torsion::fresh_instance ( ) const
overridevirtual
core::Real protocols::protein_interface_design::filters::Torsion::lower ( ) const
inline

References lower_.

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::filters::Torsion::lower ( core::Real const  l)
inline

References lower_.

std::string protocols::protein_interface_design::filters::Torsion::name ( ) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::protein_interface_design::filters::Torsion::parse_my_tag ( utility::tag::TagCOP  ,
basic::datacache::DataMap &   
)
overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References lower(), core::pose::parse_resnum(), core::pack::task::parse_task_operations(), resnum(), resnum_, task_factory(), task_factory_set(), task_factory_set_, torsion(), protocols::protein_interface_design::filters::TR(), and upper().

void protocols::protein_interface_design::filters::Torsion::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::protein_interface_design::filters::Torsion::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::protein_interface_design::filters::Torsion::report_sm ( core::pose::Pose const &  ) const
overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

core::Size protocols::protein_interface_design::filters::Torsion::resnum ( core::pose::Pose const &  p) const

References resnum_.

Referenced by apply(), compute(), and parse_my_tag().

void protocols::protein_interface_design::filters::Torsion::resnum ( core::pose::ResidueIndexDescriptionCOP  r)

References resnum_.

void protocols::protein_interface_design::filters::Torsion::resnum ( core::Size const  r)
core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::Torsion::task_factory ( ) const
void protocols::protein_interface_design::filters::Torsion::task_factory ( core::pack::task::TaskFactoryOP  tf)

References task_factory_.

void protocols::protein_interface_design::filters::Torsion::task_factory_set ( bool const  b)
inline
bool protocols::protein_interface_design::filters::Torsion::task_factory_set ( ) const
inline

References task_factory_set_.

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::filters::Torsion::torsion ( std::string const &  t)
inline
std::string protocols::protein_interface_design::filters::Torsion::torsion ( ) const
inline

References torsion_.

Referenced by apply(), compute(), and parse_my_tag().

core::Real protocols::protein_interface_design::filters::Torsion::upper ( ) const
inline

References upper_.

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::filters::Torsion::upper ( core::Real const  u)
inline

Member Data Documentation

core::Real protocols::protein_interface_design::filters::Torsion::lower_
private

Referenced by lower().

core::pose::ResidueIndexDescriptionCOP protocols::protein_interface_design::filters::Torsion::resnum_
private

Referenced by apply(), compute(), parse_my_tag(), and resnum().

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::Torsion::task_factory_
private

Referenced by task_factory().

bool protocols::protein_interface_design::filters::Torsion::task_factory_set_
private

Referenced by parse_my_tag(), and task_factory_set().

std::string protocols::protein_interface_design::filters::Torsion::torsion_
private

Referenced by torsion().

core::Real protocols::protein_interface_design::filters::Torsion::upper_
private

Referenced by upper().


The documentation for this class was generated from the following files: