#include <TorsionFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::Torsion:

Public Member Functions
	Torsion ()
	default ctor More...

bool	apply (core::pose::Pose const &pose) const override
	Constructor with a single target residue. More...

void	report (std::ostream &out, core::pose::Pose const &pose) const override

core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...

protocols::filters::FilterOP	clone () const override

protocols::filters::FilterOP	fresh_instance () const override

core::Real	compute (core::pose::Pose const &pose) const

	~Torsion () override

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...

core::Real	lower () const

void	lower (core::Real const l)

core::Real	upper () const

void	upper (core::Real const u)

core::Size	resnum (core::pose::Pose const &) const

void	resnum (core::pose::ResidueIndexDescriptionCOP r)

void	resnum (core::Size const r)

void	torsion (std::string const &t)

std::string	torsion () const

core::pack::task::TaskFactoryOP	task_factory () const

void	task_factory (core::pack::task::TaskFactoryOP tf)

void	task_factory_set (bool const b)

bool	task_factory_set () const

std::string	name () const override

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	~Filter () override

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual core::Real	score (core::pose::Pose &pose)

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Types
typedef protocols::filters::Filter	parent

Private Attributes
core::Real	lower_

core::Real	upper_

core::pose::ResidueIndexDescriptionCOP	resnum_

std::string	torsion_

core::pack::task::TaskFactoryOP	task_factory_

bool	task_factory_set_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

◆ parent

typedef protocols::filters::Filter protocols::protein_interface_design::filters::Torsion::parent

private

Constructor & Destructor Documentation

◆ Torsion()

protocols::protein_interface_design::filters::Torsion::Torsion ( )

default ctor

◆ ~Torsion()

protocols::protein_interface_design::filters::Torsion::~Torsion ( )

overridedefault

Member Function Documentation

◆ apply()

bool protocols::protein_interface_design::filters::Torsion::apply ( core::pose::Pose const & pose ) const

overridevirtual

◆ class_name()

std::string protocols::protein_interface_design::filters::Torsion::class_name ( )

static

Referenced by protocols::protein_interface_design::filters::TorsionCreator::keyname(), name(), and provide_xml_schema().

◆ clone()

protocols::filters::FilterOP protocols::protein_interface_design::filters::Torsion::clone ( ) const

overridevirtual

Implements protocols::filters::Filter.

◆ compute()

core::Real protocols::protein_interface_design::filters::Torsion::compute ( core::pose::Pose const & pose ) const

References core::pose::Pose::omega(), core::pose::Pose::phi(), core::pose::Pose::psi(), resnum(), resnum_, and torsion().

Referenced by report(), and report_sm().

◆ fresh_instance()

protocols::filters::FilterOP protocols::protein_interface_design::filters::Torsion::fresh_instance ( ) const

overridevirtual

Implements protocols::filters::Filter.

◆ lower() [1/2]

core::Real protocols::protein_interface_design::filters::Torsion::lower ( ) const

inline

References lower_.

Referenced by apply(), and parse_my_tag().

◆ lower() [2/2]

void protocols::protein_interface_design::filters::Torsion::lower ( core::Real const l )

inline

References lower_.

◆ name()

std::string protocols::protein_interface_design::filters::Torsion::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

◆ parse_my_tag()

void protocols::protein_interface_design::filters::Torsion::parse_my_tag	(	utility::tag::TagCOP	,
		basic::datacache::DataMap &
	)

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References lower(), core::pose::parse_resnum(), core::pack::task::parse_task_operations(), resnum(), resnum_, task_factory(), task_factory_set(), task_factory_set_, torsion(), protocols::protein_interface_design::filters::TR(), and upper().

◆ provide_xml_schema()

void protocols::protein_interface_design::filters::Torsion::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References core::pack::task::attributes_for_parse_task_operations(), class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::protein_interface_design::filters::TorsionCreator::provide_xml_schema().

◆ report()

void protocols::protein_interface_design::filters::Torsion::report	(	std::ostream &	out,
		core::pose::Pose const &	pose
	)		const

overridevirtual

Reimplemented from protocols::filters::Filter.

References compute(), and core::conformation::membrane::out.

◆ report_sm()

core::Real protocols::protein_interface_design::filters::Torsion::report_sm ( core::pose::Pose const & ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

◆ resnum() [1/3]

core::Size protocols::protein_interface_design::filters::Torsion::resnum ( core::pose::Pose const & p ) const

References resnum_.

Referenced by apply(), compute(), and parse_my_tag().

◆ resnum() [2/3]

void protocols::protein_interface_design::filters::Torsion::resnum ( core::pose::ResidueIndexDescriptionCOP r )

References resnum_.

◆ resnum() [3/3]

void protocols::protein_interface_design::filters::Torsion::resnum ( core::Size const r )

References core::pose::make_rid_posenum(), and resnum_.

◆ task_factory() [1/2]

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::Torsion::task_factory ( ) const

References task_factory_.

Referenced by apply(), protocols::splice::Splice::apply(), protocols::splice::SpliceOut::apply(), and parse_my_tag().

◆ task_factory() [2/2]

void protocols::protein_interface_design::filters::Torsion::task_factory ( core::pack::task::TaskFactoryOP tf )

References task_factory_.

◆ task_factory_set() [1/2]

bool protocols::protein_interface_design::filters::Torsion::task_factory_set ( ) const

inline

References task_factory_set_.

Referenced by apply(), and parse_my_tag().

◆ task_factory_set() [2/2]

void protocols::protein_interface_design::filters::Torsion::task_factory_set ( bool const b )

inline

References protocols::match::upstream::b, and task_factory_set_.

Referenced by protocols::splice::Splice::apply(), and protocols::splice::SpliceOut::apply().

◆ torsion() [1/2]

std::string protocols::protein_interface_design::filters::Torsion::torsion ( ) const

inline

References torsion_.

Referenced by apply(), compute(), and parse_my_tag().

◆ torsion() [2/2]

void protocols::protein_interface_design::filters::Torsion::torsion ( std::string const & t )

inline

References protocols::hybridization::t, and torsion_.

◆ upper() [1/2]

core::Real protocols::protein_interface_design::filters::Torsion::upper ( ) const

inline

References upper_.

Referenced by apply(), and parse_my_tag().

◆ upper() [2/2]

void protocols::protein_interface_design::filters::Torsion::upper ( core::Real const u )

inline

References protocols::hybridization::u, and upper_.

Member Data Documentation

◆ lower_

core::Real protocols::protein_interface_design::filters::Torsion::lower_

private

Referenced by lower().

◆ resnum_

core::pose::ResidueIndexDescriptionCOP protocols::protein_interface_design::filters::Torsion::resnum_

private

Referenced by apply(), compute(), parse_my_tag(), and resnum().

◆ task_factory_

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::Torsion::task_factory_

private

Referenced by task_factory().

◆ task_factory_set_

bool protocols::protein_interface_design::filters::Torsion::task_factory_set_

private

Referenced by parse_my_tag(), and task_factory_set().

◆ torsion_

std::string protocols::protein_interface_design::filters::Torsion::torsion_

private

Referenced by torsion().

◆ upper_

core::Real protocols::protein_interface_design::filters::Torsion::upper_

private

Referenced by upper().

The documentation for this class was generated from the following files:

src/protocols/protein_interface_design/filters/TorsionFilter.hh
src/protocols/protein_interface_design/filters/TorsionFilter.cc

Public Member Functions

Static Public Member Functions

Private Types

Private Attributes

Additional Inherited Members

Member Typedef Documentation

◆ parent

Constructor & Destructor Documentation

◆ Torsion()

◆ ~Torsion()

Member Function Documentation

◆ apply()

◆ class_name()

◆ clone()

◆ compute()

◆ fresh_instance()

◆ lower() [1/2]

◆ lower() [2/2]

◆ name()

◆ parse_my_tag()

◆ provide_xml_schema()

◆ report()

◆ report_sm()

◆ resnum() [1/3]

◆ resnum() [2/3]

◆ resnum() [3/3]

◆ task_factory() [1/2]

◆ task_factory() [2/2]

◆ task_factory_set() [1/2]

◆ task_factory_set() [2/2]

◆ torsion() [1/2]

◆ torsion() [2/2]

◆ upper() [1/2]

◆ upper() [2/2]

Member Data Documentation

◆ lower_

◆ resnum_

◆ task_factory_

◆ task_factory_set_

◆ torsion_

◆ upper_