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core::io::silent::SilentFileData Member List

This is the complete list of members for core::io::silent::SilentFileData, including all inherited members.

_read_file(std::string const &filename, bool throw_exception_on_bad_structs=false)core::io::silent::SilentFileData
_read_file(std::string const &filename, utility::vector1< std::string > const &tags, bool throw_exception_on_bad_structs=false)core::io::silent::SilentFileData
_write_silent_struct(SilentStruct &s, std::ostream &out, bool bWriteScoreOnly=false) const core::io::silent::SilentFileData
add_as_other_struct_if_relevant(SilentStructOP const &new_struct)core::io::silent::SilentFileData
add_structure(SilentStructOP const &new_struct)core::io::silent::SilentFileData
add_structure(SilentStruct const &new_struct)core::io::silent::SilentFileData
add_structure_replace_tag_if_necessary(SilentStructOP &new_struct)core::io::silent::SilentFileData
begin()core::io::silent::SilentFileDatainline
begin() const core::io::silent::SilentFileDatainline
check_if_rna_from_sequence_line(std::string const &sequence_line)core::io::silent::SilentFileDataprivate
clear()core::io::silent::SilentFileDatainline
clear_shared_silent_data()core::io::silent::SilentFileDatainline
clear_structure_map()core::io::silent::SilentFileDatainline
comment_line(std::string const &line)core::io::silent::SilentFileDatainline
comment_lines()core::io::silent::SilentFileDatainline
comment_lines_core::io::silent::SilentFileDataprivate
create_SilentStructOP()core::io::silent::SilentFileData
end()core::io::silent::SilentFileDatainline
end() const core::io::silent::SilentFileDatainline
filename() const core::io::silent::SilentFileDatainline
filename_core::io::silent::SilentFileDataprivate
full_model_parameters_core::io::silent::SilentFileDataprivate
get_iterator_for_tag(const std::string &tag)core::io::silent::SilentFileDatainline
get_iterator_for_tag(const std::string &tag) const core::io::silent::SilentFileDatainline
get_resnum(std::string const &filename)core::io::silent::SilentFileData
get_sequence(std::string const &filename)core::io::silent::SilentFileData
get_shared_silent_data(SharedSilentDataType ssdt) const core::io::silent::SilentFileData
get_structure(const std::string &tag) const core::io::silent::SilentFileDatainline
has_shared_silent_data(SharedSilentDataType ssdt) const core::io::silent::SilentFileData
has_tag(std::string const &tag) const core::io::silent::SilentFileDatainline
is_score_type_line(std::string const &line) const core::io::silent::SilentFileDataprivate
line_starts_with_other(std::string const &line) const core::io::silent::SilentFileDataprivate
line_starts_with_other_header_string(std::string const &line) const core::io::silent::SilentFileDataprivate
line_starts_with_remark(std::string const &line) const core::io::silent::SilentFileDataprivate
line_starts_with_score(std::string const &line) const core::io::silent::SilentFileDataprivate
line_starts_with_sequence(std::string const &line) const core::io::silent::SilentFileDataprivate
lines_from_header_line_collection(std::map< SilentFileHeaderLine, std::string > const &header_lines, utility::vector1< std::string > &all_lines) const core::io::silent::SilentFileDataprivate
matched_tags(std::string const &expression, std::string const &mode, utility::vector1< std::string > &tags_in_file) const core::io::silent::SilentFileData
nres() const core::io::silent::SilentFileData
operator[](std::string tag)core::io::silent::SilentFileData
options_core::io::silent::SilentFileDataprivate
order_by_energy()core::io::silent::SilentFileData
push_back(SilentStructOP const &new_struct)core::io::silent::SilentFileDatainline
read_file(std::string const &filename)core::io::silent::SilentFileData
read_file(std::string const &filename, utility::vector1< std::string > const &tags)core::io::silent::SilentFileData
read_full_model_parameters_from_remark(std::string const &line, bool const header=false)core::io::silent::SilentFileDataprivate
read_silent_struct_type_from_remark(std::string const &line, bool const header=false)core::io::silent::SilentFileDataprivate
read_stream(std::istream &data, utility::vector1< std::string > const &tags, bool throw_exception_on_bad_structs, std::string filename="read_from_stream")core::io::silent::SilentFileData
read_tags_fast(std::string const &filename) const core::io::silent::SilentFileData
read_tags_fast(std::string const &filename, utility::vector1< std::string > &) const core::io::silent::SilentFileData
record_source_core::io::silent::SilentFileDataprivate
renumber_all_decoys()core::io::silent::SilentFileData
reverse_score_filter(Real const score_fraction)core::io::silent::SilentFileData
score_filter(Real const score_fraction)core::io::silent::SilentFileData
set_filename(std::string filename)core::io::silent::SilentFileDatainline
set_record_source(bool const &new_mode)core::io::silent::SilentFileDatainline
set_shared_silent_data(SharedSilentDataType ssdt, SharedSilentDataOP ssd_op) const core::io::silent::SilentFileData
set_verbose(bool const setting)core::io::silent::SilentFileDatainline
shared_silent_data_core::io::silent::SilentFileDatamutableprivate
silent_struct_type_core::io::silent::SilentFileDataprivate
SilentFileData(SilentFileOptions const &options)core::io::silent::SilentFileData
SilentFileData(std::string const &filename, SilentFileOptions const &options)core::io::silent::SilentFileData
SilentFileData(std::string const &filename, bool const store_argv_in_file, bool const strict_column_mode, std::string const &silent_struct_type, SilentFileOptions const &options)core::io::silent::SilentFileData
size() const core::io::silent::SilentFileDatainline
store_argv_in_file() const core::io::silent::SilentFileDatainline
store_argv_in_file(bool new_setting)core::io::silent::SilentFileDatainline
store_argv_in_file_core::io::silent::SilentFileDataprivate
strict_column_mode() const core::io::silent::SilentFileDatainline
strict_column_mode(bool new_mode)core::io::silent::SilentFileDatainline
strict_column_mode_core::io::silent::SilentFileDataprivate
structure_list()core::io::silent::SilentFileDatainline
structure_list_core::io::silent::SilentFileDataprivate
structure_map_core::io::silent::SilentFileDataprivate
tags() const core::io::silent::SilentFileData
verbose_core::io::silent::SilentFileDataprivate
write_all(std::string const &filename, bool bWriteScoreOnly=false) const core::io::silent::SilentFileData
write_comment(std::ostream &out, std::string const &line) const core::io::silent::SilentFileData
write_silent_struct(SilentStruct &s, std::string const &filename, bool bWriteScoreOnly=false) const core::io::silent::SilentFileData
write_silent_struct(SilentStruct &s, std::ostream &out, bool bWriteScoreOnly=false) const core::io::silent::SilentFileData
~SilentFileData() overridecore::io::silent::SilentFileData