protocols::loophash::BackboneSegment Class Reference

#include <BackboneDB.hh>

Public Member Functions
	BackboneSegment ()
	BackboneSegment (const std::vector< core::Real > &phi, const std::vector< core::Real > &psi, const std::vector< core::Real > &omega)
void	apply_to_pose (core::pose::Pose &pose, core::Size ir, bool cut=false) const
void	read_from_pose (core::pose::Pose const &pose, core::Size ir, core::Size length)
void	print () const
core::Size	length () const
const std::vector< core::Real > &	phi () const
const std::vector< core::Real > &	psi () const
const std::vector< core::Real > &	omega () const
bool	compare (const BackboneSegment &bs1, core::Real tolerance) const
bool	operator== (const BackboneSegment &bs1) const
bool	operator!= (const BackboneSegment &other) const
core::Size	get_mem_foot_print ()

Private Attributes
std::vector< core::Real >	phi_
std::vector< core::Real >	psi_
std::vector< core::Real >	omega_

Constructor & Destructor Documentation

BackboneSegment() [1/2]

protocols::loophash::BackboneSegment::BackboneSegment ( )

inline

BackboneSegment() [2/2]

protocols::loophash::BackboneSegment::BackboneSegment ( const std::vector< core::Real > &  phi, const std::vector< core::Real > &  psi, const std::vector< core::Real > &  omega  )

inline

References omega(), omega_, phi(), phi_, psi(), and psi_.

Member Function Documentation

apply_to_pose()

void protocols::loophash::BackboneSegment::apply_to_pose	(	core::pose::Pose &	pose,
		core::Size	ir,
		bool	cut = false
	)		const

References core::chemical::ResidueTypeBase::aa(), core::chemical::aa_vrt, core::kinematics::FoldTree::add_edge(), core::kinematics::FoldTree::cutpoints(), core::pose::Pose::fold_tree(), core::chemical::ResidueTypeBase::is_polymer(), protocols::make_rot_lib::PEPTIDE, core::kinematics::FoldTree::reorder(), core::pose::Pose::residue_type(), core::kinematics::FoldTree::root(), core::pose::Pose::set_omega(), core::pose::Pose::set_phi(), core::pose::Pose::set_psi(), core::pose::Pose::size(), and core::pose::TR().

Referenced by protocols::loophash::LoopHashLibrary::apply_random(), protocols::loophash::LoopHashLibrary::get_all(), protocols::loophash::LocalInserter_SimpleMin::make_local_bb_change(), protocols::loophash::LocalInserter_SimpleMin::make_local_bb_change_close_gaps(), protocols::loophash::LocalInserter_SimpleMin::make_local_bb_change_include_cut(), and protocols::loophash::LoopHashLibrary::test_loop_sample().

compare()

bool protocols::loophash::BackboneSegment::compare	(	const BackboneSegment &	bs1,
		core::Real	tolerance
	)		const

References omega(), phi(), and psi().

Referenced by protocols::loophash::LoopHashLibrary::test_saving_library().

get_mem_foot_print()

core::Size protocols::loophash::BackboneSegment::get_mem_foot_print ( )

inline

References phi_.

length()

core::Size protocols::loophash::BackboneSegment::length ( ) const

inline

References phi_.

Referenced by protocols::loophash::LocalInserter_SimpleMin::make_local_bb_change(), protocols::loophash::LocalInserter_SimpleMin::make_local_bb_change_close_gaps(), protocols::loophash::LocalInserter_SimpleMin::make_local_bb_change_include_cut(), and protocols::forge::remodel::RemodelLoopMover::set_segment_stage().

omega()

const std::vector<core::Real>& protocols::loophash::BackboneSegment::omega ( ) const

inline

References omega_.

Referenced by BackboneSegment(), compare(), protocols::loophash::get_rmsd(), operator==(), protocols::loop_modeler::perturbers::LoopHashPerturber::perturb_subset(), and protocols::forge::remodel::RemodelLoopMover::set_segment_stage().

operator!=()

bool protocols::loophash::BackboneSegment::operator!= ( const BackboneSegment &  other ) const

inline

operator==()

bool protocols::loophash::BackboneSegment::operator==

(

const BackboneSegment &

bs1

)

const

References omega(), phi(), and psi().

phi()

const std::vector<core::Real>& protocols::loophash::BackboneSegment::phi ( ) const

inline

References phi_.

Referenced by BackboneSegment(), protocols::loophash::LoopHashSampler::build_structures(), compare(), protocols::loophash::get_rmsd(), operator==(), protocols::loop_modeler::perturbers::LoopHashPerturber::perturb_subset(), and protocols::forge::remodel::RemodelLoopMover::set_segment_stage().

print()

void protocols::loophash::BackboneSegment::print

(

)

const

References core::pose::TR().

Referenced by protocols::loophash::LoopHashLibrary::apply_random(), protocols::loophash::LoopHashLibrary::test_loop_sample(), and protocols::loophash::LoopHashLibrary::test_saving_library().

psi()

const std::vector<core::Real>& protocols::loophash::BackboneSegment::psi ( ) const

inline

References psi_.

Referenced by BackboneSegment(), protocols::loophash::LoopHashSampler::build_structures(), compare(), protocols::loophash::get_rmsd(), operator==(), protocols::loop_modeler::perturbers::LoopHashPerturber::perturb_subset(), and protocols::forge::remodel::RemodelLoopMover::set_segment_stage().

read_from_pose()

void protocols::loophash::BackboneSegment::read_from_pose	(	core::pose::Pose const &	pose,
		core::Size	ir,
		core::Size	length
	)

References core::pose::Pose::omega(), core::pose::Pose::phi(), core::pose::Pose::psi(), and core::pose::Pose::size().

Referenced by protocols::loophash::LoopHashLibrary::apply_random(), protocols::loophash::LoopHashSampler::build_structures(), protocols::loophash::LoopHashLibrary::extract_data_from_pose(), protocols::loophash::LoopHashLibrary::get_all(), protocols::loophash::LoopHashLibrary::test_loop_sample(), and protocols::loophash::LoopHashLibrary::test_saving_library().

Member Data Documentation

omega_

std::vector<core::Real> protocols::loophash::BackboneSegment::omega_

private

Referenced by BackboneSegment(), and omega().

phi_

std::vector<core::Real> protocols::loophash::BackboneSegment::phi_

private

Referenced by BackboneSegment(), get_mem_foot_print(), length(), and phi().

psi_

std::vector<core::Real> protocols::loophash::BackboneSegment::psi_

private

Referenced by BackboneSegment(), and psi().

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The documentation for this class was generated from the following files:

• src/protocols/loophash/BackboneDB.hh
• src/protocols/loophash/BackboneDB.cc