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core::energy_methods::FreeDOF_Energy Member List

This is the complete list of members for core::energy_methods::FreeDOF_Energy, including all inherited members.

accumulate_stack_energy(pose::Pose &pose, core::scoring::ScoreFunction const &scorefxn, utility::vector1< Real > &stack_energy) constcore::energy_methods::FreeDOF_Energyprivate
atomistic_energy(core::Size atmno, conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &scorefxn, EnergyMap &emap) constcore::scoring::methods::EnergyMethodvirtual
atomistic_pair_energy(core::Size atmno1, conformation::Residue const &rsd1, core::Size atomno2, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &scorefxn, EnergyMap &emap) constcore::scoring::methods::EnergyMethodvirtual
atoms_with_dof_derivatives(conformation::Residue const &res, pose::Pose const &pose) constcore::scoring::methods::OneBodyEnergyvirtual
clone() const overridecore::energy_methods::FreeDOF_Energyvirtual
ContextIndependentOneBodyEnergy(EnergyMethodCreatorOP)core::scoring::methods::ContextIndependentOneBodyEnergy
defines_dof_derivatives(pose::Pose const &p) constcore::scoring::methods::OneBodyEnergyvirtual
defines_high_order_terms(pose::Pose const &) constcore::scoring::methods::EnergyMethodvirtual
defines_score_for_residue(conformation::Residue const &) constcore::scoring::methods::OneBodyEnergyvirtual
do_fa_stack_scorefunction_checks(core::scoring::ScoreFunction const &scorefxn) constcore::energy_methods::FreeDOF_Energyprivate
energy_method_options_core::energy_methods::FreeDOF_Energyprivate
EnergyMethod(EnergyMethodCreatorOP creator)core::scoring::methods::EnergyMethod
eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) constcore::scoring::methods::EnergyMethodvirtual
eval_residue_derivatives(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, pose::Pose const &pose, EnergyMap const &weights, utility::vector1< DerivVectorPair > &atom_derivs) constcore::scoring::methods::OneBodyEnergyvirtual
eval_residue_dof_derivative(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, id::DOF_ID const &dof_id, id::TorsionID const &torsion_id, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights) constcore::scoring::methods::OneBodyEnergyvirtual
finalize_after_derivatives(pose::Pose &, ScoreFunction const &) constcore::scoring::methods::EnergyMethodvirtual
finalize_after_minimizing(pose::Pose &pose) constcore::scoring::methods::EnergyMethodvirtual
finalize_total_energy(pose::Pose &pose, core::scoring::ScoreFunction const &, core::scoring::EnergyMap &totals) const overridecore::energy_methods::FreeDOF_Energyvirtual
free_res_weights_core::energy_methods::FreeDOF_Energyprivate
FreeDOF_Energy(core::scoring::methods::EnergyMethodOptions const &energy_method_options)core::energy_methods::FreeDOF_Energy
get_hbond_energy(pose::Pose &pose, core::scoring::ScoreFunction const &scorefxn, utility::vector1< Real > &base_hbond_energy, utility::vector1< Real > &sugar_hbond_energy) constcore::energy_methods::FreeDOF_Energyprivate
has_atomistic_energies() constcore::scoring::methods::EnergyMethodvirtual
has_atomistic_pairwise_energies() constcore::scoring::methods::EnergyMethodvirtual
indicate_required_context_graphs(utility::vector1< bool > &) const overridecore::energy_methods::FreeDOF_Energyvirtual
method_type() const overridecore::scoring::methods::ContextIndependentOneBodyEnergyvirtual
minimize_in_whole_structure_context(pose::Pose const &) constcore::scoring::methods::EnergyMethodvirtual
OneBodyEnergy(EnergyMethodCreatorOP)core::scoring::methods::OneBodyEnergy
options_core::energy_methods::FreeDOF_Energyprivate
parent typedefcore::energy_methods::FreeDOF_Energy
prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) constcore::scoring::methods::EnergyMethodvirtual
provide_citation_info(basic::citation_manager::CitationCollectionList &) constcore::scoring::methods::EnergyMethodvirtual
requires_a_setup_for_derivatives_for_residue_opportunity(pose::Pose const &pose) constcore::scoring::methods::OneBodyEnergyvirtual
requires_a_setup_for_scoring_for_residue_opportunity_during_minimization(pose::Pose const &pose) constcore::scoring::methods::OneBodyEnergyvirtual
requires_a_setup_for_scoring_for_residue_opportunity_during_regular_scoring(pose::Pose const &pose) constcore::scoring::methods::EnergyMethodvirtual
residue_energy(conformation::Residue const &rsd, pose::Pose const &, core::scoring::EnergyMap &emap) const overridecore::energy_methods::FreeDOF_Energyvirtual
residue_energy_ext(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, pose::Pose const &pose, EnergyMap &emap) constcore::scoring::methods::OneBodyEnergyvirtual
score_types() constcore::scoring::methods::EnergyMethodinline
score_types_core::scoring::methods::EnergyMethodprivate
set_score_types(EnergyMethodCreatorOP creator)core::scoring::methods::EnergyMethodprotected
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sfxn) constcore::scoring::methods::EnergyMethodvirtual
setup_for_derivatives_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, ResSingleMinimizationData &min_data, basic::datacache::BasicDataCache &res_data_cache) constcore::scoring::methods::OneBodyEnergyvirtual
setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) constcore::scoring::methods::EnergyMethodvirtual
setup_for_minimizing_for_residue(conformation::Residue const &rsd, pose::Pose const &, ScoreFunction const &, kinematics::MinimizerMapBase const &, basic::datacache::BasicDataCache &, ResSingleMinimizationData &) constcore::scoring::methods::OneBodyEnergyvirtual
setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) constcore::scoring::methods::EnergyMethodvirtual
setup_for_packing_with_rotsets(pose::Pose &pose, pack_basic::RotamerSetsBaseOP const &rotsets, ScoreFunction const &sfxn) constcore::scoring::methods::EnergyMethodvirtual
setup_for_scoring(pose::Pose &pose, core::scoring::ScoreFunction const &) const overridecore::energy_methods::FreeDOF_Energyvirtual
setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, ResSingleMinimizationData &min_data) constcore::scoring::methods::OneBodyEnergyvirtual
setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) constcore::scoring::methods::OneBodyEnergy
core::scoring::methods::EnergyMethod::setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) constcore::scoring::methods::EnergyMethodvirtual
show_additional_info(std::ostream &, pose::Pose &, bool) constcore::scoring::methods::EnergyMethodvirtual
update_residue_for_packing(pose::Pose &, Size resid) constcore::scoring::methods::EnergyMethodvirtual
use_extended_residue_energy_interface() constcore::scoring::methods::OneBodyEnergyvirtual
version() const overridecore::energy_methods::FreeDOF_Energyvirtual
~FreeDOF_Energy() overridecore::energy_methods::FreeDOF_Energy
~OneBodyEnergy() overridecore::scoring::methods::OneBodyEnergy