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protocols::fold_from_loops::selectors::CutpointResidueSelector Class Reference

#include <CutpointResidueSelector.hh>

Inheritance diagram for protocols::fold_from_loops::selectors::CutpointResidueSelector:
Inheritance graph
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Public Member Functions

 CutpointResidueSelector ()
 
 CutpointResidueSelector (bool use_foldtree)
 
 CutpointResidueSelector (CutpointResidueSelector const &src)
 Copy constructor. More...
 
core::select::residue_selector::ResidueSelectorOP clone () const override
 Clone operator. More...
 
 ~CutpointResidueSelector () override
 
void use_foldtree (bool pick)
 
bool use_foldtree () const
 
core::select::residue_selector::ResidueSubset apply (core::pose::Pose const &pose) const override
 Return a ResidueSubset indicating a selection of Residues from the input Pose; the ResidueSubset is an array of booleans where a value of "true" for position i indicates that residue i is a part of the selected subset – and a value of "false" would indicate that it is not. More...
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &datamap) override
 Initialize any data members of this instance from an input tag and a DataMap object. More...
 
std::string get_name () const override
 
- Public Member Functions inherited from core::select::residue_selector::ResidueSelector
 ResidueSelector ()
 Constructor. More...
 
 ~ResidueSelector () override
 Destructor. More...
 
virtual void provide_citation_info (basic::citation_manager::CitationCollectionList &) const
 Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...
 

Static Public Member Functions

static std::string class_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Private Attributes

bool use_foldtree_
 

Constructor & Destructor Documentation

protocols::fold_from_loops::selectors::CutpointResidueSelector::CutpointResidueSelector ( )
protocols::fold_from_loops::selectors::CutpointResidueSelector::CutpointResidueSelector ( bool  use_foldtree)
protocols::fold_from_loops::selectors::CutpointResidueSelector::CutpointResidueSelector ( CutpointResidueSelector const &  src)

Copy constructor.

protocols::fold_from_loops::selectors::CutpointResidueSelector::~CutpointResidueSelector ( )
override

Member Function Documentation

core::select::residue_selector::ResidueSubset protocols::fold_from_loops::selectors::CutpointResidueSelector::apply ( core::pose::Pose const &  pose) const
overridevirtual

Return a ResidueSubset indicating a selection of Residues from the input Pose; the ResidueSubset is an array of booleans where a value of "true" for position i indicates that residue i is a part of the selected subset – and a value of "false" would indicate that it is not.

Implements core::select::residue_selector::ResidueSelector.

References core::chemical::CUTPOINT_LOWER, core::pose::Pose::fold_tree(), core::conformation::Residue::has_variant_type(), core::kinematics::FoldTree::is_cutpoint(), core::chemical::LOWER_TERMINUS_VARIANT, core::pose::Pose::residue(), core::pose::Pose::size(), core::chemical::UPPER_TERMINUS_VARIANT, and use_foldtree_.

std::string protocols::fold_from_loops::selectors::CutpointResidueSelector::class_name ( )
static
core::select::residue_selector::ResidueSelectorOP protocols::fold_from_loops::selectors::CutpointResidueSelector::clone ( ) const
overridevirtual

Clone operator.

Copy this object and return an owning pointer to the new object.

Implements core::select::residue_selector::ResidueSelector.

std::string protocols::fold_from_loops::selectors::CutpointResidueSelector::get_name ( ) const
overridevirtual
void protocols::fold_from_loops::selectors::CutpointResidueSelector::parse_my_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap &  datacache 
)
overridevirtual

Initialize any data members of this instance from an input tag and a DataMap object.

Noop implementation in the base class in the case that a derived class has no need to read data from an input tag

Reimplemented from core::select::residue_selector::ResidueSelector.

References use_foldtree().

void protocols::fold_from_loops::selectors::CutpointResidueSelector::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::fold_from_loops::selectors::CutpointResidueSelector::use_foldtree ( bool  pick)
inline

References use_foldtree_.

bool protocols::fold_from_loops::selectors::CutpointResidueSelector::use_foldtree ( ) const
inline

References use_foldtree_.

Referenced by parse_my_tag().

Member Data Documentation

bool protocols::fold_from_loops::selectors::CutpointResidueSelector::use_foldtree_
private

Referenced by apply(), and use_foldtree().


The documentation for this class was generated from the following files: