protocols::fold_from_loops::selectors::CutpointResidueSelector Class Reference

#include <CutpointResidueSelector.hh>

Inheritance diagram for protocols::fold_from_loops::selectors::CutpointResidueSelector:

Public Member Functions
	CutpointResidueSelector ()
	CutpointResidueSelector (bool use_foldtree)
	CutpointResidueSelector (CutpointResidueSelector const &src)
	Copy constructor. More...
core::select::residue_selector::ResidueSelectorOP	clone () const override
	Clone operator. More...
	~CutpointResidueSelector () override
void	use_foldtree (bool pick)
bool	use_foldtree () const
core::select::residue_selector::ResidueSubset	apply (core::pose::Pose const &pose) const override
	Return a ResidueSubset indicating a selection of Residues from the input Pose; the ResidueSubset is an array of booleans where a value of "true" for position i indicates that residue i is a part of the selected subset – and a value of "false" would indicate that it is not. More...
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &datamap) override
	Initialize any data members of this instance from an input tag and a DataMap object. More...
std::string	get_name () const override
Public Member Functions inherited from core::select::residue_selector::ResidueSelector
	ResidueSelector ()
	Constructor. More...
	~ResidueSelector () override
	Destructor. More...
utility::vector1< core::Size >	selection_positions (core::pose::Pose const &pose) const
	Calls apply and returns the Rosetta numbering corresponding to the selected residues. More...
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
bool	use_foldtree_

Constructor & Destructor Documentation

CutpointResidueSelector() [1/3]

protocols::fold_from_loops::selectors::CutpointResidueSelector::CutpointResidueSelector

(

)

CutpointResidueSelector() [2/3]

protocols::fold_from_loops::selectors::CutpointResidueSelector::CutpointResidueSelector

(

bool

use_foldtree

)

CutpointResidueSelector() [3/3]

protocols::fold_from_loops::selectors::CutpointResidueSelector::CutpointResidueSelector

(

CutpointResidueSelector const &

src

)

Copy constructor.

~CutpointResidueSelector()

protocols::fold_from_loops::selectors::CutpointResidueSelector::~CutpointResidueSelector ( )

override

Member Function Documentation

apply()

core::select::residue_selector::ResidueSubset protocols::fold_from_loops::selectors::CutpointResidueSelector::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Return a ResidueSubset indicating a selection of Residues from the input Pose; the ResidueSubset is an array of booleans where a value of "true" for position i indicates that residue i is a part of the selected subset – and a value of "false" would indicate that it is not.

Implements core::select::residue_selector::ResidueSelector.

References core::chemical::CUTPOINT_LOWER, core::pose::Pose::fold_tree(), core::conformation::Residue::has_variant_type(), core::kinematics::FoldTree::is_cutpoint(), core::chemical::LOWER_TERMINUS_VARIANT, core::pose::Pose::residue(), core::pose::Pose::size(), core::chemical::UPPER_TERMINUS_VARIANT, and use_foldtree_.

class_name()

std::string protocols::fold_from_loops::selectors::CutpointResidueSelector::class_name ( )

static

Referenced by get_name(), protocols::fold_from_loops::selectors::CutpointResidueSelectorCreator::keyname(), and provide_xml_schema().

clone()

core::select::residue_selector::ResidueSelectorOP protocols::fold_from_loops::selectors::CutpointResidueSelector::clone ( ) const

overridevirtual

Clone operator.

Copy this object and return an owning pointer to the new object.

Implements core::select::residue_selector::ResidueSelector.

get_name()

std::string protocols::fold_from_loops::selectors::CutpointResidueSelector::get_name ( ) const

overridevirtual

Implements core::select::residue_selector::ResidueSelector.

References class_name().

parse_my_tag()

void protocols::fold_from_loops::selectors::CutpointResidueSelector::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  datacache  )

overridevirtual

Initialize any data members of this instance from an input tag and a DataMap object.

Noop implementation in the base class in the case that a derived class has no need to read data from an input tag

Reimplemented from core::select::residue_selector::ResidueSelector.

References use_foldtree().

provide_xml_schema()

void protocols::fold_from_loops::selectors::CutpointResidueSelector::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References class_name(), core::id::to_string(), and core::select::residue_selector::xsd_type_definition_w_attributes().

Referenced by protocols::fold_from_loops::selectors::CutpointResidueSelectorCreator::provide_xml_schema().

use_foldtree() [1/2]

bool protocols::fold_from_loops::selectors::CutpointResidueSelector::use_foldtree ( ) const

inline

References use_foldtree_.

Referenced by parse_my_tag().

use_foldtree() [2/2]

void protocols::fold_from_loops::selectors::CutpointResidueSelector::use_foldtree ( bool  pick )

inline

References use_foldtree_.

Member Data Documentation

use_foldtree_

bool protocols::fold_from_loops::selectors::CutpointResidueSelector::use_foldtree_

private

Referenced by apply(), and use_foldtree().

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The documentation for this class was generated from the following files:

• src/protocols/fold_from_loops/selectors/CutpointResidueSelector.hh
• src/protocols/fold_from_loops/selectors/CutpointResidueSelector.cc