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Namespaces | Enumerations
AntibodyEnum.hh File Reference

Enumerators + TypeDefs for Antibody namespace. More...

#include <utility/vector1.hh>
#include <core/types.hh>
#include <iosfwd>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::antibody
 

Enumerations

enum  protocols::antibody::CDRNameEnum {
  protocols::antibody::h1 = 1, protocols::antibody::h2, protocols::antibody::h3, protocols::antibody::l1,
  protocols::antibody::l2, protocols::antibody::l3, protocols::antibody::proto_h4, protocols::antibody::proto_l4,
  protocols::antibody::start_cdr_loop = h1, protocols::antibody::H_chain_last_loop = h3, protocols::antibody::L_chain_last_loop = l3, protocols::antibody::camelid_last_loop = h3,
  protocols::antibody::num_cdr_loops = l3, protocols::antibody::CDRNameEnum_start = h1, protocols::antibody::CDRNameEnum_total = l3, protocols::antibody::CDRNameEnum_proto_start = proto_h4,
  protocols::antibody::CDRNameEnum_proto_total = proto_l4, protocols::antibody::l4 = proto_l4, protocols::antibody::h4 = proto_h4, protocols::antibody::L1 = l1,
  protocols::antibody::L2 = l2, protocols::antibody::L3 = l3, protocols::antibody::H1 = h1, protocols::antibody::H2 = h2,
  protocols::antibody::H3 = h3, protocols::antibody::L4 = l4, protocols::antibody::H4 = h4
}
 
enum  protocols::antibody::AntibodyNumberingSchemeEnum {
  protocols::antibody::Chothia_Scheme = 1, protocols::antibody::Kabat_Scheme, protocols::antibody::Enhanced_Chothia_Scheme, protocols::antibody::IMGT_Scheme,
  protocols::antibody::AHO_Scheme, protocols::antibody::AntibodyNumberingSchemeEnum_start = Chothia_Scheme, protocols::antibody::AntibodyNumberingSchemeEnum_total = AHO_Scheme, protocols::antibody::NONE
}
 
enum  protocols::antibody::CDRDefinitionEnum {
  protocols::antibody::Chothia = 1, protocols::antibody::Aroop, protocols::antibody::Kabat, protocols::antibody::Martin,
  protocols::antibody::North, protocols::antibody::CDRDefinitionEnum_start = Chothia, protocols::antibody::CDRDefinitionEnum_total = North
}
 
enum  protocols::antibody::LightChainTypeEnum {
  protocols::antibody::lambda =1, protocols::antibody::kappa, protocols::antibody::lambda6, protocols::antibody::unknown,
  protocols::antibody::LightChainTypeEnum_start = lambda, protocols::antibody::LightChainTypeEnum_total = unknown
}
 
enum  protocols::antibody::AntibodyRegionEnum {
  protocols::antibody::antigen_region = 1, protocols::antibody::cdr_region, protocols::antibody::framework_region, protocols::antibody::AntibodyRegionEnum_start = antigen_region,
  protocols::antibody::AntibodyRegionEnum_total = framework_region, protocols::antibody::unknown_ab_region
}
 
enum  protocols::antibody::CDRLandmarkEnum { protocols::antibody::cdr_start = 1, protocols::antibody::cdr_end, protocols::antibody::CDRLandmarkEnum_total = cdr_end }
 Main enumerator for AntibodyNumbering. More...
 
enum  protocols::antibody::H3BaseTypeEnum {
  protocols::antibody::Kinked = 1, protocols::antibody::Extended, protocols::antibody::Neutral, protocols::antibody::Unknown,
  protocols::antibody::H3BaseTypeEnum_start = Kinked, protocols::antibody::H3BaseTypeEnum_total = Unknown
}
 
enum  protocols::antibody::PackingAngleEnum {
  protocols::antibody::VL_sheet_1 = 1, protocols::antibody::VL_sheet_2, protocols::antibody::VH_sheet_1, protocols::antibody::VH_sheet_2,
  protocols::antibody::PackingAngleEnum_start = VL_sheet_1, protocols::antibody::PackingAngleEnum_total = VH_sheet_2
}
 These are used to determine the VL_VH packing angle. More...
 

Detailed Description

Enumerators + TypeDefs for Antibody namespace.

Author
Jared Adolf-Bryfogle (jadol.nosp@m.fbr@.nosp@m.gmail.nosp@m..com)
Jianqing Xu (xubes.nosp@m.t@gm.nosp@m.ail.c.nosp@m.om)