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AA | core::chemical::aa_from_name (std::string const &name) |
| Give an AA string 3-letter code, return its enum type. More...
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AA | core::chemical::aa_from_one_or_three (std::string const &name) |
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bool | core::chemical::is_canonical_D_aa (AA const aa) |
| Give an enum type, return true if and only if it is a D-amino acid that is the mirror image of a canonical alpha-L-amino acid. More...
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bool | core::chemical::is_canonical_L_aa_excluding_gly (AA const aa) |
| Give an enum type, return true if and only if it is an L-amino acid of a canonical type. More...
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bool | core::chemical::is_canonical_L_aa_or_gly (AA const aa) |
| Given an enum type, return true if and only if it is a canonical L-amino acid. Rocco approves. More...
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bool | core::chemical::is_canonical_beta3_aa (AA const aa) |
| Given an enum type, return true if and only if it is a canonical beta-amino acid. More...
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bool | core::chemical::is_aa_name_unknown (std::string const &name) |
| Given aa three letter string, return true if it is an unknown aa. More...
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AA | core::chemical::get_L_equivalent (AA const aa) |
| Given an enum type for a D-amino acid with a canonical side-chain, return the enum type for the corresponding L-amino acid (or aa_unk if the corresponding L-amino acid cannot be determined). More...
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AA | core::chemical::get_D_equivalent (AA const aa) |
| Given an enum type for a L-amino acid with a canonical side-chain, return the enum type for the corresponding D-amino acid (or aa_unk if the corresponding D-amino acid cannot be determined). More...
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std::string | core::chemical::name_from_aa (AA aa) |
| give a enum type and return the string name More...
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char | core::chemical::oneletter_code_from_aa (AA aa) |
| give a enum type and return the string name More...
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AA | core::chemical::aa_from_oneletter_code (char onelettercode) |
| give a 1 letter code and return the string name More...
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bool | core::chemical::oneletter_code_specifies_aa (char onelettercode) |
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std::istream & | core::chemical::operator>> (std::istream &is, AA &aa) |
| input operator for AA enum type More...
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std::ostream & | core::chemical::operator<< (std::ostream &os, AA const &aa) |
| output operator for AA enum type More...
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