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protocols::matdes::MatDesPointMutationCalculator Member List

This is the complete list of members for protocols::matdes::MatDesPointMutationCalculator, including all inherited members.

calc_point_mut_filters(Pose const &start_pose, utility::vector1< std::pair< core::Size, utility::vector1< std::pair< core::chemical::AA, utility::vector1< core::Real > > > > > &seqpos_aa_vals_vec)protocols::matdes::MatDesPointMutationCalculator
calc_point_mut_filters(Pose const &start_pose, utility::vector1< std::pair< core::Size, utility::vector1< std::pair< core::chemical::AA, core::Real > > > > &seqpos_aa_val_vec)protocols::matdes::MatDesPointMutationCalculator
clone() const protocols::matdes::MatDesPointMutationCalculator
design_shell_protocols::matdes::MatDesPointMutationCalculatorprivate
dump_pdb() const protocols::matdes::MatDesPointMutationCalculator
dump_pdb(bool const dump_pdb)protocols::matdes::MatDesPointMutationCalculator
dump_pdb_protocols::matdes::MatDesPointMutationCalculatorprivate
eval_filters(core::pose::Pose &pose, bool &filter_pass, utility::vector1< core::Real > &vals, bool always_eval)protocols::matdes::MatDesPointMutationCalculator
filter_thresholds() const protocols::matdes::MatDesPointMutationCalculator
filter_thresholds(utility::vector1< std::pair< std::string, core::Real > > filter_thresholds)protocols::matdes::MatDesPointMutationCalculator
filter_thresholds_protocols::matdes::MatDesPointMutationCalculatorprivate
filters() const protocols::matdes::MatDesPointMutationCalculator
filters(utility::vector1< protocols::filters::FilterOP > filters)protocols::matdes::MatDesPointMutationCalculator
filters_protocols::matdes::MatDesPointMutationCalculatorprivate
force_natro(bool const force_natro)protocols::matdes::MatDesPointMutationCalculator
force_natro() const protocols::matdes::MatDesPointMutationCalculator
force_natro_protocols::matdes::MatDesPointMutationCalculatorprivate
MatDesPointMutationCalculator()protocols::matdes::MatDesPointMutationCalculator
MatDesPointMutationCalculator(core::pack::task::TaskFactoryOP task_factory, core::scoring::ScoreFunctionOP scorefxn, protocols::moves::MoverOP relax_mover, utility::vector1< protocols::filters::FilterOP > filters, utility::vector1< std::pair< std::string, core::Real > > filter_thresholds, utility::vector1< protocols::simple_filters::TaskAwareScoreTypeFilterOP > set_task_for_filters, utility::vector1< std::string > sample_types, bool dump_pdb=false, bool rtmin=false, bool parallel=false, core::Real design_shell=-1.0, core::Real repack_shell=8.0, bool force_natro=false)protocols::matdes::MatDesPointMutationCalculator
MatDesPointMutationCalculator(core::pack::task::TaskFactoryOP task_factory, core::scoring::ScoreFunctionOP scorefxn, protocols::moves::MoverOP relax_mover, protocols::filters::FilterOP filter, std::pair< std::string, core::Real > filter_threshold, protocols::simple_filters::TaskAwareScoreTypeFilterOP set_task_for_filter, std::string sample_type="low", bool dump_pdb=false, bool rtmin=false, bool parallel=false, core::Real design_shell=-1.0, core::Real repack_shell=8.0, bool force_natro=false)protocols::matdes::MatDesPointMutationCalculator
mutate_and_relax(core::pose::Pose &pose, core::Size const &resi, core::chemical::AA const &target_aa)protocols::matdes::MatDesPointMutationCalculator
mutate_and_relax(core::pose::Pose &pose, core::Size const &resi, core::chemical::AA const &target_aa, protocols::minimization_packing::GreenPackerOP green_packer)protocols::matdes::MatDesPointMutationCalculator
new_tasks(utility::vector1< core::pack::task::PackerTaskOP > new_tasks)protocols::matdes::MatDesPointMutationCalculator
new_tasks() const protocols::matdes::MatDesPointMutationCalculator
new_tasks_protocols::matdes::MatDesPointMutationCalculatorprivate
parallel(bool const r)protocols::matdes::MatDesPointMutationCalculator
parallel() const protocols::matdes::MatDesPointMutationCalculator
parallel_protocols::matdes::MatDesPointMutationCalculatorprivate
Pose typedefprotocols::matdes::MatDesPointMutationCalculator
reference_pose() const protocols::matdes::MatDesPointMutationCalculator
reference_pose(core::pose::PoseOP const reference_pose)protocols::matdes::MatDesPointMutationCalculator
reference_pose_protocols::matdes::MatDesPointMutationCalculatorprivate
relax_mover() const protocols::matdes::MatDesPointMutationCalculator
relax_mover(protocols::moves::MoverOP relax_mover)protocols::matdes::MatDesPointMutationCalculator
relax_mover_protocols::matdes::MatDesPointMutationCalculatorprivate
repack_shell_protocols::matdes::MatDesPointMutationCalculatorprivate
rtmin(bool const r)protocols::matdes::MatDesPointMutationCalculator
rtmin() const protocols::matdes::MatDesPointMutationCalculator
rtmin_protocols::matdes::MatDesPointMutationCalculatorprivate
sample_types() const protocols::matdes::MatDesPointMutationCalculator
sample_types(utility::vector1< std::string > const &sample_types)protocols::matdes::MatDesPointMutationCalculator
sample_types_protocols::matdes::MatDesPointMutationCalculatorprivate
scorefxn() const protocols::matdes::MatDesPointMutationCalculator
scorefxn(core::scoring::ScoreFunctionOP scorefxn)protocols::matdes::MatDesPointMutationCalculator
scorefxn_protocols::matdes::MatDesPointMutationCalculatorprivate
set_design_shell(core::Real dz_shell)protocols::matdes::MatDesPointMutationCalculator
set_repack_shell(core::Real rp_shell)protocols::matdes::MatDesPointMutationCalculator
set_task_for_filters() const protocols::matdes::MatDesPointMutationCalculator
set_task_for_filters(utility::vector1< protocols::simple_filters::TaskAwareScoreTypeFilterOP > set_task_for_filters)protocols::matdes::MatDesPointMutationCalculator
set_task_for_filters_protocols::matdes::MatDesPointMutationCalculatorprivate
stored_task_names(utility::vector1< std::string > stored_task_names)protocols::matdes::MatDesPointMutationCalculator
stored_task_names() const protocols::matdes::MatDesPointMutationCalculator
stored_task_names_protocols::matdes::MatDesPointMutationCalculatorprivate
task_factory() const protocols::matdes::MatDesPointMutationCalculator
task_factory(core::pack::task::TaskFactoryOP task_factory)protocols::matdes::MatDesPointMutationCalculator
task_factory_protocols::matdes::MatDesPointMutationCalculatorprivate
~MatDesPointMutationCalculator() overrideprotocols::matdes::MatDesPointMutationCalculator