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protocols::motifs::MotifSearch Member List

This is the complete list of members for protocols::motifs::MotifSearch, including all inherited members.

bp_motifhits(core::Size const seqpos)protocols::motifs::MotifSearch
bp_rotamers(core::Size const seqpos)protocols::motifs::MotifSearch
bpdata_protocols::motifs::MotifSearchprivate
bpdata_filename_protocols::motifs::MotifSearchprivate
build_positionOPs() const protocols::motifs::MotifSearchinline
build_positionOPs_protocols::motifs::MotifSearchprivate
BuildPosition_from_Size(Pose const &pose, core::Size const input_BP)protocols::motifs::MotifSearch
bump_check_protocols::motifs::MotifSearchprivate
clear_bprots_protocols::motifs::MotifSearchprivate
data_protocols::motifs::MotifSearchprivate
data_filename_protocols::motifs::MotifSearchprivate
defs2BuildPositions(Pose const &pose, protocols::dna::DnaDesignDefOPs const &defs)protocols::motifs::MotifSearch
defs2BuildPositions_findts(Pose const &pose, protocols::dna::DnaDesignDefOPs const &defs)protocols::motifs::MotifSearch
dna_positions() const protocols::motifs::MotifSearchinline
dna_positions_protocols::motifs::MotifSearchprivate
DnaDesignDefOP typedefprotocols::motifs::MotifSearch
DnaDesignDefOPs typedefprotocols::motifs::MotifSearch
dtest_cutoff() const protocols::motifs::MotifSearchinline
dtest_cutoff_protocols::motifs::MotifSearchprivate
dump_motifs_protocols::motifs::MotifSearchprivate
identify_motif_build_positions(Pose const &pose, Sizes &build_positions)protocols::motifs::MotifSearch
identify_motif_BuildPositions(Pose const &pose)protocols::motifs::MotifSearch
incorporate_motifs(Pose const &pose)protocols::motifs::MotifSearch
init_options()protocols::motifs::MotifSearchprivate
initialize(Pose &pose, Sizes &input_BPs)protocols::motifs::MotifSearch
map2keyvector(std::map< core::Size, std::set< std::string > > mappositions)protocols::motifs::MotifSearch
minimize() const protocols::motifs::MotifSearchinline
minimize_protocols::motifs::MotifSearchprivate
motif_library() const protocols::motifs::MotifSearchinline
motif_library_protocols::motifs::MotifSearchprivate
MotifSearch()protocols::motifs::MotifSearch
MotifSearch(MotifSearch const &src)protocols::motifs::MotifSearch
operator=(MotifSearch const &src)protocols::motifs::MotifSearch
output_protocols::motifs::MotifSearchprivate
output_filename_protocols::motifs::MotifSearchprivate
override_option_input(Real const &r1, Real const &z1, Real const &r2, Real const &z2, Real const &d1, core::Size const &rlevel, bool const bpdata, bool const bump_check)protocols::motifs::MotifSearch
Pose typedefprotocols::motifs::MotifSearch
position_vector_setup(Pose const &pose)protocols::motifs::MotifSearch
protein_dna_motif()protocols::motifs::MotifSearch
protein_DNA_motif_build_positions_JA(Pose const &pose, Sizes &build_positions, Sizes &target_positions)protocols::motifs::MotifSearch
protein_DNA_motif_target_positions_JA(Pose const &pose, Sizes &build_positions, Sizes &target_positions, Sizes &short_tl)protocols::motifs::MotifSearch
protein_positions() const protocols::motifs::MotifSearchinline
protein_positions_protocols::motifs::MotifSearchprivate
quick_and_dirty_protocols::motifs::MotifSearchprivate
Real typedefprotocols::motifs::MotifSearch
rerun_motifsearch_protocols::motifs::MotifSearchprivate
reset_option_input()protocols::motifs::MotifSearch
restrict_to_wt_protocols::motifs::MotifSearchprivate
rmsd_cutoff_1() const protocols::motifs::MotifSearchinline
rmsd_cutoff_1_protocols::motifs::MotifSearchprivate
rmsd_cutoff_2() const protocols::motifs::MotifSearchinline
rmsd_cutoff_2_protocols::motifs::MotifSearchprivate
rot_level() const protocols::motifs::MotifSearchinline
rot_level_protocols::motifs::MotifSearchprivate
rots2add_protocols::motifs::MotifSearchprivate
run(Pose &pose, Sizes &input_BPs)protocols::motifs::MotifSearch
set_motif_library(MotifLibrary &motiflibrary)protocols::motifs::MotifSearch
shorten_target_list(Pose const &pose, core::Size const bp, Sizes &full_tl)protocols::motifs::MotifSearch
Size typedefprotocols::motifs::MotifSearch
Sizes typedefprotocols::motifs::MotifSearch
target_conformers_map() const protocols::motifs::MotifSearchinline
target_conformers_map_protocols::motifs::MotifSearchprivate
target_positions() const protocols::motifs::MotifSearchinline
target_positions_protocols::motifs::MotifSearchprivate
ztest_cutoff_1() const protocols::motifs::MotifSearchinline
ztest_cutoff_1_protocols::motifs::MotifSearchprivate
ztest_cutoff_2() const protocols::motifs::MotifSearchinline
ztest_cutoff_2_protocols::motifs::MotifSearchprivate
~MotifSearch() overrideprotocols::motifs::MotifSearch