protocols::simple_filters::DomainInterfaceFilter Class Reference

#include <DomainInterfaceFilter.hh>

Inheritance diagram for protocols::simple_filters::DomainInterfaceFilter:

Public Member Functions
	DomainInterfaceFilter ()
	DomainInterfaceFilter (DomainInterfaceFilter const &)
	~DomainInterfaceFilter () override
std::string const &	query_region_string ()
std::string const &	target_region_string ()
std::set< core::Size > const &	query_region ()
std::set< core::Size > const &	target_region ()
void	query_region (std::set< core::Size > &region)
void	target_region (std::set< core::Size > &region)
void	query_region_string (std::string const &region_str)
void	target_region_string (std::string const &region_str)
core::Real	cb_dist_cut () const
core::Real	nearby_atom_cut () const
core::Real	vector_angle_cut () const
core::Real	vector_dist_cut () const
void	cb_dist_cut (core::Real setting)
void	nearby_atom_cut (core::Real setting)
void	vector_angle_cut (core::Real setting)
void	vector_dist_cut (core::Real setting)
std::string	get_type () const override
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
void	parse_my_tag (utility::tag::TagCOP, basic::datacache::DataMap &) override
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
filters::FilterOP	clone () const override
filters::FilterOP	fresh_instance () const override
bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...
std::string	name () const override
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
	~Filter () override
virtual void	report (std::ostream &, core::pose::Pose const &) const
virtual core::Real	report_sm (core::pose::Pose const &) const
	used to report filter internals through a score or silent file More...
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real	score (core::pose::Pose &pose)
virtual bool	filter_provides_citation_info () const
	Does this filter provide information about how to cite it? More...
virtual utility::vector1 < basic::citation_manager::CitationCollectionCOP >	provide_citation_info () const
	Provide the citation. More...
virtual bool	filter_is_unpublished () const
	Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
virtual utility::vector1 < basic::citation_manager::UnpublishedModuleInfoCOP >	provide_authorship_info_for_unpublished () const
	Provide a list of authors and their e-mail addresses, as strings. More...

Private Attributes
std::string const	type_
std::string	user_defined_name_
core::Real	cb_dist_cut_
core::Real	nearby_atom_cut_
core::Real	vector_angle_cut_
core::Real	vector_dist_cut_
std::set< core::Size >	query_region_
std::set< core::Size >	target_region_
std::string	query_region_str_
std::string	target_region_str_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

protocols::simple_filters::DomainInterfaceFilter::DomainInterfaceFilter

(

)

protocols::simple_filters::DomainInterfaceFilter::DomainInterfaceFilter

(

DomainInterfaceFilter const &

src

)

protocols::simple_filters::DomainInterfaceFilter::~DomainInterfaceFilter ( )

overridedefault

Member Function Documentation

bool protocols::simple_filters::DomainInterfaceFilter::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Returns true if the given pose passes the filter, false otherwise. Pose passes the filter if ALL query residues are part of an interface with ANY of the target residues.

Implements protocols::filters::Filter.

References core::select::util::calc_interacting_vector(), cb_dist_cut_, core::pose::get_resnum_list(), nearby_atom_cut_, query_region_, query_region_str_, core::pose::Pose::size(), target_region_, target_region_str_, vector_angle_cut_, and vector_dist_cut_.

core::Real protocols::simple_filters::DomainInterfaceFilter::cb_dist_cut

(

)

const

References cb_dist_cut_.

Referenced by parse_my_tag().

void protocols::simple_filters::DomainInterfaceFilter::cb_dist_cut

(

core::Real

setting

)

References cb_dist_cut_.

filters::FilterOP protocols::simple_filters::DomainInterfaceFilter::clone ( ) const

overridevirtual

Implements protocols::filters::Filter.

filters::FilterOP protocols::simple_filters::DomainInterfaceFilter::fresh_instance ( ) const

overridevirtual

Implements protocols::filters::Filter.

std::string protocols::simple_filters::DomainInterfaceFilter::get_type ( ) const

inlineoverridevirtual

Reimplemented from protocols::filters::Filter.

References type_.

std::string protocols::simple_filters::DomainInterfaceFilter::get_user_defined_name ( ) const

inline

References user_defined_name_.

std::string protocols::simple_filters::DomainInterfaceFilter::name ( ) const

inlineoverridevirtual

Reimplemented from protocols::filters::Filter.

Referenced by set_user_defined_name().

core::Real protocols::simple_filters::DomainInterfaceFilter::nearby_atom_cut

(

)

const

References nearby_atom_cut_.

Referenced by parse_my_tag().

void protocols::simple_filters::DomainInterfaceFilter::nearby_atom_cut

(

core::Real

setting

)

References nearby_atom_cut_.

void protocols::simple_filters::DomainInterfaceFilter::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &    )

overridevirtual

used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual

Reimplemented from protocols::filters::Filter.

References cb_dist_cut(), nearby_atom_cut(), query_region_string(), target_region_string(), vector_angle_cut(), and vector_dist_cut().

std::set< core::Size > const & protocols::simple_filters::DomainInterfaceFilter::query_region

(

)

References query_region_.

void protocols::simple_filters::DomainInterfaceFilter::query_region

(

std::set< core::Size > &

region

)

References query_region_.

std::string const & protocols::simple_filters::DomainInterfaceFilter::query_region_string

(

)

References query_region_str_.

Referenced by parse_my_tag().

void protocols::simple_filters::DomainInterfaceFilter::query_region_string

(

std::string const &

region_str

)

References query_region_str_.

void protocols::simple_filters::DomainInterfaceFilter::set_user_defined_name ( std::string const &  name )

inline

References name(), and user_defined_name_.

std::set< core::Size > const & protocols::simple_filters::DomainInterfaceFilter::target_region

(

)

References target_region_.

void protocols::simple_filters::DomainInterfaceFilter::target_region

(

std::set< core::Size > &

region

)

References target_region_.

std::string const & protocols::simple_filters::DomainInterfaceFilter::target_region_string

(

)

References target_region_str_.

Referenced by parse_my_tag().

void protocols::simple_filters::DomainInterfaceFilter::target_region_string

(

std::string const &

region_str

)

References target_region_str_.

core::Real protocols::simple_filters::DomainInterfaceFilter::vector_angle_cut

(

)

const

References vector_angle_cut_.

Referenced by parse_my_tag().

void protocols::simple_filters::DomainInterfaceFilter::vector_angle_cut

(

core::Real

setting

)

References vector_angle_cut_.

core::Real protocols::simple_filters::DomainInterfaceFilter::vector_dist_cut

(

)

const

References vector_dist_cut_.

Referenced by parse_my_tag().

void protocols::simple_filters::DomainInterfaceFilter::vector_dist_cut

(

core::Real

setting

)

References vector_dist_cut_.

Member Data Documentation

core::Real protocols::simple_filters::DomainInterfaceFilter::cb_dist_cut_

private

Referenced by apply(), and cb_dist_cut().

core::Real protocols::simple_filters::DomainInterfaceFilter::nearby_atom_cut_

private

Referenced by apply(), and nearby_atom_cut().

std::set< core::Size > protocols::simple_filters::DomainInterfaceFilter::query_region_

private

Referenced by apply(), and query_region().

std::string protocols::simple_filters::DomainInterfaceFilter::query_region_str_

private

Referenced by apply(), and query_region_string().

std::set< core::Size > protocols::simple_filters::DomainInterfaceFilter::target_region_

private

Referenced by apply(), and target_region().

std::string protocols::simple_filters::DomainInterfaceFilter::target_region_str_

private

Referenced by apply(), and target_region_string().

std::string const protocols::simple_filters::DomainInterfaceFilter::type_

private

Referenced by get_type().

std::string protocols::simple_filters::DomainInterfaceFilter::user_defined_name_

private

Referenced by get_user_defined_name(), and set_user_defined_name().

core::Real protocols::simple_filters::DomainInterfaceFilter::vector_angle_cut_

private

Referenced by apply(), and vector_angle_cut().

core::Real protocols::simple_filters::DomainInterfaceFilter::vector_dist_cut_

private

Referenced by apply(), and vector_dist_cut().

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The documentation for this class was generated from the following files:

• src/protocols/simple_filters/DomainInterfaceFilter.hh
• src/protocols/simple_filters/DomainInterfaceFilter.cc