#include <SpecificResiduesNearInterfaceFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter:

Public Member Functions
	SpecificResiduesNearInterfaceFilter ()
	default ctor More...

	SpecificResiduesNearInterfaceFilter (SpecificResiduesNearInterfaceFilter const &src)

	~SpecificResiduesNearInterfaceFilter () override

core::pack::task::TaskFactoryOP	task_factory () const

void	task_factory (core::pack::task::TaskFactoryOP tf)

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...

core::Size	compute (core::pose::Pose const &pose) const
	Constructor with a single target residue. More...

bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...

void	report (std::ostream &out, core::pose::Pose const &pose) const override

core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...

protocols::filters::FilterOP	clone () const override

protocols::filters::FilterOP	fresh_instance () const override

std::string	name () const override

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	~Filter () override

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual core::Real	score (core::pose::Pose &pose)

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Types
typedef protocols::filters::Filter	parent

Private Attributes
core::pack::task::TaskFactoryOP	task_factory_

core::Size	rb_jump_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

◆ parent

typedef protocols::filters::Filter protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::parent

private

Constructor & Destructor Documentation

◆ SpecificResiduesNearInterfaceFilter() [1/2]

protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::SpecificResiduesNearInterfaceFilter ( )

default ctor

◆ SpecificResiduesNearInterfaceFilter() [2/2]

protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::SpecificResiduesNearInterfaceFilter ( SpecificResiduesNearInterfaceFilter const & src )

◆ ~SpecificResiduesNearInterfaceFilter()

protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::~SpecificResiduesNearInterfaceFilter ( )

overridedefault

Member Function Documentation

◆ apply()

bool protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::apply ( core::pose::Pose const & pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute().

◆ class_name()

std::string protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::class_name ( )

static

Referenced by protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilterCreator::keyname(), name(), and provide_xml_schema().

◆ clone()

FilterOP protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::clone ( ) const

overridevirtual

Implements protocols::filters::Filter.

◆ compute()

Size protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::compute ( core::pose::Pose const & pose ) const

Constructor with a single target residue.

References protocols::scoring::Interface::calculate(), core::pose::Pose::conformation(), protocols::scoring::Interface::is_interface(), core::conformation::Conformation::num_chains(), rb_jump_, core::pose::Pose::size(), and task_factory_.

Referenced by apply(), report(), and report_sm().

◆ fresh_instance()

FilterOP protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::fresh_instance ( ) const

overridevirtual

Implements protocols::filters::Filter.

◆ name()

std::string protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

◆ parse_my_tag()

void protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::parse_my_tag	(	utility::tag::TagCOP	,
		basic::datacache::DataMap &
	)

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References core::pack::task::parse_task_operations(), rb_jump_, and task_factory().

◆ provide_xml_schema()

void protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References core::pack::task::attributes_for_parse_task_operations(), class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilterCreator::provide_xml_schema().

◆ report()

void protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::report	(	std::ostream &	out,
		core::pose::Pose const &	pose
	)		const

overridevirtual

Reimplemented from protocols::filters::Filter.

References compute(), and core::conformation::membrane::out.

◆ report_sm()

Real protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::report_sm ( core::pose::Pose const & ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

◆ task_factory() [1/2]

TaskFactoryOP protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::task_factory ( ) const

References task_factory_.

Referenced by parse_my_tag().

◆ task_factory() [2/2]

void protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::task_factory ( core::pack::task::TaskFactoryOP tf )

Member Data Documentation

◆ rb_jump_

core::Size protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::rb_jump_

private

Referenced by compute(), and parse_my_tag().

◆ task_factory_

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::task_factory_

private

Referenced by compute(), and task_factory().

The documentation for this class was generated from the following files:

src/protocols/protein_interface_design/filters/SpecificResiduesNearInterfaceFilter.hh
src/protocols/protein_interface_design/filters/SpecificResiduesNearInterfaceFilter.cc

Public Member Functions

Static Public Member Functions

Private Types

Private Attributes

Additional Inherited Members

Member Typedef Documentation

◆ parent

Constructor & Destructor Documentation

◆ SpecificResiduesNearInterfaceFilter() [1/2]

◆ SpecificResiduesNearInterfaceFilter() [2/2]

◆ ~SpecificResiduesNearInterfaceFilter()

Member Function Documentation

◆ apply()

◆ class_name()

◆ clone()

◆ compute()

◆ fresh_instance()

◆ name()

◆ parse_my_tag()

◆ provide_xml_schema()

◆ report()

◆ report_sm()

◆ task_factory() [1/2]

◆ task_factory() [2/2]

Member Data Documentation

◆ rb_jump_

◆ task_factory_