Rosetta: protocols::splice::DesignInterfacesOperation Class Reference

Rosetta

#include <DesignInterfacesOperation.hh>

Inheritance diagram for protocols::splice::DesignInterfacesOperation:

Inheritance graph

[legend]

Public Types
typedef RestrictOperationsBase	parent

Public Types inherited from protocols::task_operations::RestrictOperationsBase
typedef core::pack::task::operation::TaskOperation	TaskOperation

typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP

typedef TaskOperation	parent

Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP

typedef basic::datacache::DataMap	DataMap

typedef pose::Pose	Pose

Public Member Functions
	DesignInterfacesOperation ()

void	design_shell (core::Real const radius)

core::Real	design_shell () const

	~DesignInterfacesOperation () override

TaskOperationOP	clone () const override
	Create another task operation of the type matching the most-derived version of the class. More...

void	apply (core::pose::Pose const &, core::pack::task::PackerTask &) const override
	restricts to repacking all residues outside of design_shell_ around each residue More...

void	parse_tag (TagCOP, DataMap &) override
	Used to parse an xml-like tag to load parameters and properties. More...

void	repack_shell (core::Real const repack_shell)

core::Real	repack_shell () const

bool	restrict_to_repacking_chain1 () const

void	restrict_to_repacking_chain1 (bool const c)

bool	restrict_to_repacking_chain2 () const

void	restrict_to_repacking_chain2 (bool const c)

Public Member Functions inherited from protocols::task_operations::RestrictOperationsBase
	RestrictOperationsBase ()

	~RestrictOperationsBase () override

Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	keyname ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
core::Real	design_shell_

core::Real	repack_shell_

bool	restrict_to_repacking_chain1_

bool	restrict_to_repacking_chain2_

Additional Inherited Members
Protected Member Functions inherited from protocols::task_operations::RestrictOperationsBase
void	run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
	this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Member Typedef Documentation

◆ parent

typedef RestrictOperationsBase protocols::splice::DesignInterfacesOperation::parent

Constructor & Destructor Documentation

◆ DesignInterfacesOperation()

protocols::splice::DesignInterfacesOperation::DesignInterfacesOperation ( )

◆ ~DesignInterfacesOperation()

protocols::splice::DesignInterfacesOperation::~DesignInterfacesOperation ( )

overridedefault

Member Function Documentation

◆ apply()

void protocols::splice::DesignInterfacesOperation::apply	(	core::pose::Pose const &	pose,
		core::pack::task::PackerTask &	task
	)		const

overridevirtual

restricts to repacking all residues outside of design_shell_ around each residue

Implements protocols::task_operations::RestrictOperationsBase.

References core::pose::append_pose_to_pose(), protocols::protein_interface_design::movers::SetAtomTree::apply(), protocols::simple_moves::SwitchChainOrderMover::apply(), protocols::task_operations::DesignAroundOperation::apply(), protocols::task_operations::RestrictChainToRepackingOperation::apply(), protocols::task_operations::RestrictChainToRepackingOperation::chain(), protocols::simple_moves::SwitchChainOrderMover::chain_order(), core::pose::Pose::conformation(), design_shell(), protocols::task_operations::DesignAroundOperation::design_shell(), core::conformation::Conformation::detect_disulfides(), protocols::task_operations::DesignAroundOperation::include_residue(), core::conformation::Conformation::num_chains(), core::pose::partition_pose_by_jump(), repack_shell(), protocols::task_operations::DesignAroundOperation::repack_shell(), protocols::rosetta_scripts::residue_packer_states(), restrict_to_repacking_chain1(), restrict_to_repacking_chain2(), protocols::splice::TR(), and protocols::protein_interface_design::movers::SetAtomTree::two_parts_chain1().

◆ clone()

core::pack::task::operation::TaskOperationOP protocols::splice::DesignInterfacesOperation::clone ( ) const

overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements protocols::task_operations::RestrictOperationsBase.

◆ design_shell() [1/2]

core::Real protocols::splice::DesignInterfacesOperation::design_shell ( ) const

inline

References design_shell_.

Referenced by apply(), parse_tag(), and repack_shell().

◆ design_shell() [2/2]

void protocols::splice::DesignInterfacesOperation::design_shell ( core::Real const radius )

References design_shell_, repack_shell(), and repack_shell_.

◆ keyname()

static std::string protocols::splice::DesignInterfacesOperation::keyname ( )

inlinestatic

Referenced by protocols::splice::DesignInterfacesOperationCreator::keyname(), and provide_xml_schema().

◆ parse_tag()

void protocols::splice::DesignInterfacesOperation::parse_tag	(	TagCOP	tag,
		DataMap &
	)

overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References design_shell(), repack_shell(), restrict_to_repacking_chain1(), restrict_to_repacking_chain2(), and protocols::splice::TR().

◆ provide_xml_schema()

void protocols::splice::DesignInterfacesOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References keyname(), and core::pack::task::operation::task_op_schema_w_attributes().

Referenced by protocols::splice::DesignInterfacesOperationCreator::provide_xml_schema().

◆ repack_shell() [1/2]

core::Real protocols::splice::DesignInterfacesOperation::repack_shell ( ) const

inline

References repack_shell_.

Referenced by apply(), design_shell(), parse_tag(), and repack_shell().

◆ repack_shell() [2/2]

void protocols::splice::DesignInterfacesOperation::repack_shell ( core::Real const repack_shell )

inline

References design_shell(), design_shell_, repack_shell(), and repack_shell_.

◆ restrict_to_repacking_chain1() [1/2]

bool protocols::splice::DesignInterfacesOperation::restrict_to_repacking_chain1 ( ) const

inline

References restrict_to_repacking_chain1_.

Referenced by apply(), and parse_tag().

◆ restrict_to_repacking_chain1() [2/2]

void protocols::splice::DesignInterfacesOperation::restrict_to_repacking_chain1 ( bool const c )

inline

References restrict_to_repacking_chain1_.

◆ restrict_to_repacking_chain2() [1/2]

bool protocols::splice::DesignInterfacesOperation::restrict_to_repacking_chain2 ( ) const

inline

References restrict_to_repacking_chain2_.

Referenced by apply(), and parse_tag().

◆ restrict_to_repacking_chain2() [2/2]

void protocols::splice::DesignInterfacesOperation::restrict_to_repacking_chain2 ( bool const c )

inline

References restrict_to_repacking_chain2_.

Member Data Documentation

◆ design_shell_

core::Real protocols::splice::DesignInterfacesOperation::design_shell_

private

Referenced by design_shell(), and repack_shell().

◆ repack_shell_

core::Real protocols::splice::DesignInterfacesOperation::repack_shell_

private

Referenced by design_shell(), and repack_shell().

◆ restrict_to_repacking_chain1_

bool protocols::splice::DesignInterfacesOperation::restrict_to_repacking_chain1_

private

Referenced by restrict_to_repacking_chain1().

◆ restrict_to_repacking_chain2_

bool protocols::splice::DesignInterfacesOperation::restrict_to_repacking_chain2_

private

Referenced by restrict_to_repacking_chain2().

The documentation for this class was generated from the following files:

src/protocols/splice/DesignInterfacesOperation.hh
src/protocols/splice/DesignInterfacesOperation.cc