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protocols::splice::DesignInterfacesOperation Class Reference

#include <DesignInterfacesOperation.hh>

Inheritance diagram for protocols::splice::DesignInterfacesOperation:
Inheritance graph
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Public Types

typedef RestrictOperationsBase parent
 
- Public Types inherited from protocols::task_operations::RestrictOperationsBase
typedef
core::pack::task::operation::TaskOperation 
TaskOperation
 
typedef
core::pack::task::operation::TaskOperationOP 
TaskOperationOP
 
typedef TaskOperation parent
 
- Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP TagCOP
 
typedef basic::datacache::DataMap DataMap
 
typedef pose::Pose Pose
 

Public Member Functions

 DesignInterfacesOperation ()
 
void design_shell (core::Real const radius)
 
core::Real design_shell () const
 
 ~DesignInterfacesOperation () override
 
TaskOperationOP clone () const override
 Create another task operation of the type matching the most-derived version of the class. More...
 
void apply (core::pose::Pose const &, core::pack::task::PackerTask &) const override
 restricts to repacking all residues outside of design_shell_ around each residue More...
 
void parse_tag (TagCOP, DataMap &) override
 Used to parse an xml-like tag to load parameters and properties. More...
 
void repack_shell (core::Real const repack_shell)
 
core::Real repack_shell () const
 
bool restrict_to_repacking_chain1 () const
 
void restrict_to_repacking_chain1 (bool const c)
 
bool restrict_to_repacking_chain2 () const
 
void restrict_to_repacking_chain2 (bool const c)
 
- Public Member Functions inherited from protocols::task_operations::RestrictOperationsBase
 RestrictOperationsBase ()
 
 ~RestrictOperationsBase () override
 
- Public Member Functions inherited from core::pack::task::operation::TaskOperation
 ~TaskOperation () override
 
virtual void provide_citation_info (basic::citation_manager::CitationCollectionList &) const
 Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...
 

Static Public Member Functions

static std::string keyname ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Private Attributes

core::Real design_shell_
 
core::Real repack_shell_
 
bool restrict_to_repacking_chain1_
 
bool restrict_to_repacking_chain2_
 

Additional Inherited Members

- Protected Member Functions inherited from protocols::task_operations::RestrictOperationsBase
void run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
 this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...
 

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::splice::DesignInterfacesOperation::DesignInterfacesOperation ( )
protocols::splice::DesignInterfacesOperation::~DesignInterfacesOperation ( )
overridedefault

Member Function Documentation

void protocols::splice::DesignInterfacesOperation::apply ( core::pose::Pose const &  pose,
core::pack::task::PackerTask task 
) const
overridevirtual
core::pack::task::operation::TaskOperationOP protocols::splice::DesignInterfacesOperation::clone ( ) const
overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements protocols::task_operations::RestrictOperationsBase.

void protocols::splice::DesignInterfacesOperation::design_shell ( core::Real const  radius)
core::Real protocols::splice::DesignInterfacesOperation::design_shell ( ) const
inline

References design_shell_.

Referenced by apply(), parse_tag(), and repack_shell().

static std::string protocols::splice::DesignInterfacesOperation::keyname ( )
inlinestatic
void protocols::splice::DesignInterfacesOperation::parse_tag ( TagCOP  tag,
DataMap  
)
overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References design_shell(), repack_shell(), restrict_to_repacking_chain1(), restrict_to_repacking_chain2(), and protocols::splice::TR().

void protocols::splice::DesignInterfacesOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::splice::DesignInterfacesOperation::repack_shell ( core::Real const  repack_shell)
inline
core::Real protocols::splice::DesignInterfacesOperation::repack_shell ( ) const
inline

References repack_shell_.

Referenced by apply(), design_shell(), parse_tag(), and repack_shell().

bool protocols::splice::DesignInterfacesOperation::restrict_to_repacking_chain1 ( ) const
inline

References restrict_to_repacking_chain1_.

Referenced by apply(), and parse_tag().

void protocols::splice::DesignInterfacesOperation::restrict_to_repacking_chain1 ( bool const  c)
inline
bool protocols::splice::DesignInterfacesOperation::restrict_to_repacking_chain2 ( ) const
inline

References restrict_to_repacking_chain2_.

Referenced by apply(), and parse_tag().

void protocols::splice::DesignInterfacesOperation::restrict_to_repacking_chain2 ( bool const  c)
inline

Member Data Documentation

core::Real protocols::splice::DesignInterfacesOperation::design_shell_
private

Referenced by design_shell(), and repack_shell().

core::Real protocols::splice::DesignInterfacesOperation::repack_shell_
private

Referenced by design_shell(), and repack_shell().

bool protocols::splice::DesignInterfacesOperation::restrict_to_repacking_chain1_
private
bool protocols::splice::DesignInterfacesOperation::restrict_to_repacking_chain2_
private

The documentation for this class was generated from the following files: