Rosetta
protocols::antibody::AntibodyDatabaseManager Member List

This is the complete list of members for protocols::antibody::AntibodyDatabaseManager, including all inherited members.

ab_info_protocols::antibody::AntibodyDatabaseManagerprivate
AntibodyDatabaseManager(AntibodyInfoCOP ab_info, bool force_north_paper_db=false)protocols::antibody::AntibodyDatabaseManager
AntibodyDatabaseManager(AntibodyDatabaseManager const &src)protocols::antibody::AntibodyDatabaseManager
bind_vec_constraint(utility::vector1< std::string > const &vec, cppdb::statement &select_statement, core::Size &col) constprotocols::antibody::AntibodyDatabaseManagerprivate
cdr_cache_limit_protocols::antibody::AntibodyDatabaseManagerprivate
check_for_graft_instruction_inconsistencies(AntibodyCDRSetOptions const &options)protocols::antibody::AntibodyDatabaseManagerprivate
clone() constprotocols::antibody::AntibodyDatabaseManager
create_database_session(std::string const &database_path)protocols::antibody::AntibodyDatabaseManagerprivate
db_path_protocols::antibody::AntibodyDatabaseManagerprivate
db_session_protocols::antibody::AntibodyDatabaseManagerprivate
get_ands(std::string name, core::Size n) constprotocols::antibody::AntibodyDatabaseManagerprivate
get_cluster_string_vec(utility::vector1< clusters::CDRClusterEnum > const &clusters)protocols::antibody::AntibodyDatabaseManagerprivate
get_cluster_totals(bool use_outliers) constprotocols::antibody::AntibodyDatabaseManagerprivate
get_cluster_totals() constprotocols::antibody::AntibodyDatabaseManagerprivate
has_vec_inconsistency(utility::vector1< T > const &include, utility::vector1< T > const &leave_out) constprotocols::antibody::AntibodyDatabaseManagerprivate
has_vec_inconsistency(vector1< T > const &include, vector1< T > const &exclude) constprotocols::antibody::AntibodyDatabaseManager
high_mem_mode_protocols::antibody::AntibodyDatabaseManagerprivate
ignore_light_chain(bool const ignore_light_chain)protocols::antibody::AntibodyDatabaseManagerinline
ignore_light_chain_protocols::antibody::AntibodyDatabaseManagerprivate
load_cdr_design_data(design::AntibodyCDRSeqDesignOptions const &options, core::pose::Pose const &pose, std::map< core::Size, AAProbabilities > &prob_set, core::Size const cutoff)protocols::antibody::AntibodyDatabaseManager
load_cdr_design_data_for_cdrs(utility::vector1< bool > const &cdrs, core::pose::Pose const &pose, std::map< core::Size, AAProbabilities > &prob_set, core::Size const cutoff)protocols::antibody::AntibodyDatabaseManager
load_cdr_pose(CDRDBPose &db_pose)protocols::antibody::AntibodyDatabaseManager
load_cdr_poses(AntibodyCDRSetOptions const &options, core::pose::Pose const &pose, core::Size overhang=3)protocols::antibody::AntibodyDatabaseManager
load_cdr_sequences(utility::vector1< bool > const &cdrs, core::pose::Pose const &pose, bool match_on_length=false)protocols::antibody::AntibodyDatabaseManager
load_cdr_sequences_for_cdr(CDRNameEnum const cdr, core::Size const length, clusters::CDRClusterEnum const cluster, bool load_on_length)protocols::antibody::AntibodyDatabaseManagerprivate
load_cdr_sequences_for_cdr_cluster(CDRNameEnum const cdr, clusters::CDRClusterEnum const cluster)protocols::antibody::AntibodyDatabaseManager
load_cdr_sequences_for_cdr_length(CDRNameEnum const cdr, core::Size const length)protocols::antibody::AntibodyDatabaseManager
load_structure_loading_info()protocols::antibody::AntibodyDatabaseManagerprivate
loadable_structure_tags_protocols::antibody::AntibodyDatabaseManagerprivate
set_outlier_use(bool use_outliers)protocols::antibody::AntibodyDatabaseManager
skip_structure_tags_protocols::antibody::AntibodyDatabaseManagerprivate
use_h3_graft_outliers_protocols::antibody::AntibodyDatabaseManagerprivate
use_only_H3_kinked_protocols::antibody::AntibodyDatabaseManagerprivate
use_outliers_protocols::antibody::AntibodyDatabaseManagerprivate
~AntibodyDatabaseManager() overrideprotocols::antibody::AntibodyDatabaseManager