Rosetta  2021.16
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
core::pack::interaction_graph::OnTheFlyInteractionGraph Member List

This is the complete list of members for core::pack::interaction_graph::OnTheFlyInteractionGraph, including all inherited members.

aa_submatrix_energies_retrievable() const core::pack::interaction_graph::FixedBBInteractionGraphvirtual
aatype_for_node_state(int node_ind, int node_state) const core::pack::interaction_graph::FixedBBInteractionGraphvirtual
add_edge(int node1, int node2)core::pack::interaction_graph::InteractionGraphBase
add_to_nodes_one_body_energy(int node_ind, utility::vector1< core::PackerEnergy > const &one_body_energies)core::pack::interaction_graph::InteractionGraphBase
add_to_nodes_one_body_energy(int node_ind, ObjexxFCL::FArray1< core::PackerEnergy > const &one_body_energies)core::pack::interaction_graph::InteractionGraphBase
add_to_nodes_one_body_energy(int node_ind, int state_id, core::PackerEnergy const one_body_energy)core::pack::interaction_graph::InteractionGraphBase
add_to_one_body_energies(ObjexxFCL::FArray1< core::PackerEnergy > &one_body_energies)core::pack::interaction_graph::InteractionGraphBase
add_to_one_body_energy_for_node_state(int node_ind, int state, core::PackerEnergy one_body_energy)core::pack::interaction_graph::OnTheFlyInteractionGraph
AnnealableGraphBase()core::pack::interaction_graph::AnnealableGraphBase
AnnealableGraphBase(AnnealableGraphBase const &src)core::pack::interaction_graph::AnnealableGraphBase
any_vertex_state_unassigned() const overridecore::pack::interaction_graph::InteractionGraphBasevirtual
blanket_assign_state_0() override=0core::pack::interaction_graph::InteractionGraphBasepure virtual
clean_up_after_packing(core::pose::Pose &pose)core::pack::interaction_graph::AnnealableGraphBasevirtual
clean_up_edges_marked_for_deletion()core::pack::interaction_graph::InteractionGraphBaseprotected
commit_considered_substitution() override=0core::pack::interaction_graph::InteractionGraphBasepure virtual
consider_substitution(int node_ind, int new_state, core::PackerEnergy &delta_energy, core::PackerEnergy &prev_energy_for_node) override=0core::pack::interaction_graph::InteractionGraphBasepure virtual
count_connected_components_and_initialize_vertex_groups()core::pack::interaction_graph::InteractionGraphBase
count_dynamic_memory() const overridecore::pack::interaction_graph::OnTheFlyInteractionGraphvirtual
count_static_memory() const =0core::pack::interaction_graph::InteractionGraphBaseprotectedpure virtual
create_new_edge(int index1, int index2)=0core::pack::interaction_graph::InteractionGraphBasepure virtual
create_new_node(int node_index, int num_states)=0core::pack::interaction_graph::InteractionGraphBasepure virtual
declare_all_edge_energies_final()core::pack::interaction_graph::InteractionGraphBasevirtual
distinguish_backbone_and_sidechain_for_node(int node) const core::pack::interaction_graph::OnTheFlyInteractionGraph
distinguish_backbone_and_sidechain_for_node(int node, bool setting)core::pack::interaction_graph::OnTheFlyInteractionGraph
drop_all_edges_for_node(int node)core::pack::interaction_graph::InteractionGraphBase
drop_edge(std::list< EdgeBase * >::iterator edge)core::pack::interaction_graph::InteractionGraphBaseprotected
edge_list_iterator_at_end() const core::pack::interaction_graph::InteractionGraphBase
find_edge(int node1, int node2, bool const use_threadsafe_lookup=false) const core::pack::interaction_graph::InteractionGraphBase
find_edge(int node1, int node2, bool const use_threadsafe_lookup=false)core::pack::interaction_graph::InteractionGraphBase
FixedBBInteractionGraph(int num_nodes)core::pack::interaction_graph::FixedBBInteractionGraphinline
force_aa_neighbors_for_edge(int node1, int node2, int node1aa, int node2aa)core::pack::interaction_graph::FixedBBInteractionGraph
force_all_aa_neighbors_for_edge(int node1, int node2)core::pack::interaction_graph::FixedBBInteractionGraph
get_aa_submatrix_energies_for_edge(int node1, int node2, int node1aa, int node2aa) const core::pack::interaction_graph::FixedBBInteractionGraphvirtual
get_edge() const core::pack::interaction_graph::InteractionGraphBase
get_edge_exists(int node1, int node2) const core::pack::interaction_graph::InteractionGraphBase
get_edge_list_begin()core::pack::interaction_graph::InteractionGraphBaseinline
get_edge_list_begin() const core::pack::interaction_graph::InteractionGraphBaseinline
get_edge_list_end()core::pack::interaction_graph::InteractionGraphBaseinline
get_edge_list_end() const core::pack::interaction_graph::InteractionGraphBaseinline
get_edge_memory_usage() const =0core::pack::interaction_graph::InteractionGraphBasepure virtual
get_edge_weight(int node1, int node2) const core::pack::interaction_graph::InteractionGraphBase
get_energy_current_state_assignment() override=0core::pack::interaction_graph::InteractionGraphBasepure virtual
get_energy_sum_for_vertex_group(int group_id)=0core::pack::interaction_graph::InteractionGraphBasepure virtual
get_fixedbb_edge(int node1, int node2) const core::pack::interaction_graph::FixedBBInteractionGraphinlineprotected
get_fixedbb_edge(int node1, int node2)core::pack::interaction_graph::FixedBBInteractionGraphinlineprotected
get_fixedbb_node(int node_index) const core::pack::interaction_graph::FixedBBInteractionGraphinlineprotected
get_fixedbb_node(int node_index)core::pack::interaction_graph::FixedBBInteractionGraphinlineprotected
get_node(int index) const core::pack::interaction_graph::InteractionGraphBaseinline
get_node_state_offset(int index) const core::pack::interaction_graph::InteractionGraphBaseinlineprotected
get_num_aatypes() const overridecore::pack::interaction_graph::OnTheFlyInteractionGraphinlinevirtual
get_num_edges() const core::pack::interaction_graph::InteractionGraphBaseinline
get_num_nodes() const overridecore::pack::interaction_graph::InteractionGraphBaseinlinevirtual
get_num_rpe_calculations_count() const core::pack::interaction_graph::OnTheFlyInteractionGraph
get_num_states_for_node(int node) const overridecore::pack::interaction_graph::InteractionGraphBasevirtual
get_num_total_states() const overridecore::pack::interaction_graph::InteractionGraphBaseinlinevirtual
get_on_the_fly_node(int node_index)core::pack::interaction_graph::OnTheFlyInteractionGraphinlineprotected
get_on_the_fly_node(int node_index) const core::pack::interaction_graph::OnTheFlyInteractionGraphinlineprotected
get_one_body_energy_for_node_state(int node, int state) overridecore::pack::interaction_graph::OnTheFlyInteractionGraphvirtual
get_sparse_aa_info_for_edge(int node1, int node2, int node1aa, int node2aa)core::pack::interaction_graph::FixedBBInteractionGraph
get_two_body_energy_for_edge(int node1, int node2, int state_node1, int state_node2) const core::pack::interaction_graph::FixedBBInteractionGraphvirtual
get_vertex_member_of_energy_sum_group(int node_index, int group_id)core::pack::interaction_graph::InteractionGraphBaseinline
getTotalMemoryUsage() const core::pack::interaction_graph::InteractionGraphBasevirtual
increment_edge_list_iterator() const core::pack::interaction_graph::InteractionGraphBase
initialize(pack_basic::RotamerSetsBase const &rot_sets) overridecore::pack::interaction_graph::OnTheFlyInteractionGraphvirtual
InteractionGraphBase(int num_nodes)core::pack::interaction_graph::InteractionGraphBase
mine(EdgeBase const *edge) const core::pack::interaction_graph::InteractionGraphBaseinlineprotected
non_const_pose()core::pack::interaction_graph::OnTheFlyInteractionGraphinline
note_long_range_interactions_exist_for_edge(int node1, int node2)core::pack::interaction_graph::OnTheFlyInteractionGraph
note_rpe_calculated() const core::pack::interaction_graph::OnTheFlyInteractionGraphinline
note_short_range_interactions_exist_for_edge(int node1, int node2)core::pack::interaction_graph::OnTheFlyInteractionGraph
note_vertex_reached(int node_index)core::pack::interaction_graph::InteractionGraphBase
num_aa_types_core::pack::interaction_graph::OnTheFlyInteractionGraphprivate
num_rpe_calcs_core::pack::interaction_graph::OnTheFlyInteractionGraphmutableprivate
OnTheFlyInteractionGraph(int num_nodes)core::pack::interaction_graph::OnTheFlyInteractionGraph
output_connectivity(std::ostream &os) const core::pack::interaction_graph::InteractionGraphBase
output_dimacs(std::ostream &os) const core::pack::interaction_graph::InteractionGraphBase
Pose typedefcore::pack::interaction_graph::OnTheFlyInteractionGraph
pose() const core::pack::interaction_graph::OnTheFlyInteractionGraphinline
pose_core::pack::interaction_graph::OnTheFlyInteractionGraphprivate
PoseOP typedefcore::pack::interaction_graph::OnTheFlyInteractionGraph
prepare_graph_for_simulated_annealing() overridecore::pack::interaction_graph::InteractionGraphBasevirtual
print() const core::pack::interaction_graph::InteractionGraphBaseinlinevirtual
print_current_state_assignment() const =0core::pack::interaction_graph::InteractionGraphBasepure virtual
print_vertex_groups()core::pack::interaction_graph::InteractionGraphBase
print_vertices() const core::pack::interaction_graph::InteractionGraphBase
reset_edge_list_iterator_for_node(int node_index) const core::pack::interaction_graph::InteractionGraphBase
reset_rpe_calculations_count()core::pack::interaction_graph::OnTheFlyInteractionGraph
score_function() const core::pack::interaction_graph::OnTheFlyInteractionGraphinline
score_function_core::pack::interaction_graph::OnTheFlyInteractionGraphprivate
ScoreFunction typedefcore::pack::interaction_graph::OnTheFlyInteractionGraph
ScoreFunctionOP typedefcore::pack::interaction_graph::OnTheFlyInteractionGraph
set_edge_weight(int node1, int node2, Real edge_weight)core::pack::interaction_graph::InteractionGraphBase
set_errorfull_deltaE_threshold(core::PackerEnergy deltaE) override=0core::pack::interaction_graph::InteractionGraphBasepure virtual
set_GlyCorrection_values_for_edge(int node1, int node2, int node_not_neccessarily_glycine, int state, core::PackerEnergy bb_regbb_E, core::PackerEnergy bb_glybb_E, core::PackerEnergy sc_regbb_E, core::PackerEnergy sc_glybb_E)core::pack::interaction_graph::OnTheFlyInteractionGraph
set_network_state(ObjexxFCL::FArray1_int &node_states) override=0core::pack::interaction_graph::InteractionGraphBasepure virtual
set_num_states_for_node(int node, int num_states)core::pack::interaction_graph::InteractionGraphBase
set_number_of_energy_sum_vertex_groups(int num_groups)core::pack::interaction_graph::InteractionGraphBase
set_one_body_energy_for_node_state(int node_ind, int state, core::PackerEnergy one_body_energy)core::pack::interaction_graph::OnTheFlyInteractionGraph
set_onebody_energies_multithreaded(core::Size const node_index, core::pack::rotamer_set::RotamerSetCOP rotset, core::pose::Pose const &pose, core::scoring::ScoreFunction const &sfxn, task::PackerTask const &task, utility::graph::GraphCOP packer_neighbor_graph, basic::thread_manager::RosettaThreadAssignmentInfo const &thread_assignments)core::pack::interaction_graph::InteractionGraphBase
set_pose(Pose const &)core::pack::interaction_graph::OnTheFlyInteractionGraph
set_ProCorrection_values_for_edge(int node1, int node2, int node_not_neccessarily_proline, int state, core::PackerEnergy bb_regbb_E, core::PackerEnergy bb_probb_E, core::PackerEnergy sc_regbb_E, core::PackerEnergy sc_probb_E)core::pack::interaction_graph::OnTheFlyInteractionGraph
set_score_function(ScoreFunction const &)core::pack::interaction_graph::OnTheFlyInteractionGraph
set_sparse_aa_info_for_edge(int node1, int node2, ObjexxFCL::FArray2_bool const &sparse_conn_info)core::pack::interaction_graph::OnTheFlyInteractionGraph
set_state_for_node(int node_ind, int new_state) override=0core::pack::interaction_graph::InteractionGraphBasepure virtual
set_vertex_member_of_group(int vertex, int group)core::pack::interaction_graph::InteractionGraphBase
update_one_body_energies(ObjexxFCL::FArray1< core::PackerEnergy > &old_energy1b, ObjexxFCL::FArray1< core::PackerEnergy > &new_energy1b)core::pack::interaction_graph::InteractionGraphBase
vertex_already_reached(int node_index)core::pack::interaction_graph::InteractionGraphBase
zero_one_body_energies_for_node(int node)core::pack::interaction_graph::InteractionGraphBase
zero_one_body_energy_for_node_state(int node_ind, int state)core::pack::interaction_graph::OnTheFlyInteractionGraph
~AnnealableGraphBase() overridecore::pack::interaction_graph::AnnealableGraphBase
~FixedBBInteractionGraph() overridecore::pack::interaction_graph::FixedBBInteractionGraphinline
~InteractionGraphBase() overridecore::pack::interaction_graph::InteractionGraphBase
~OnTheFlyInteractionGraph() overridecore::pack::interaction_graph::OnTheFlyInteractionGraph