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Public Member Functions | Private Attributes | List of all members
core::chemical::SetICoor Class Reference

set an atom's AtomICoord More...

#include <PatchOperation.hh>

Inheritance diagram for core::chemical::SetICoor:
Inheritance graph
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Public Member Functions

 SetICoor (std::string const &atom_in, Real const phi_in, Real const theta_in, Real const d_in, std::string const &stub1_in, std::string const &stub2_in, std::string const &stub3_in)
 constructor More...
 
std::string name () const override
 Return the name of this PatchOperation ("SetICoor"). More...
 
bool apply (MutableResidueType &rsd) const override
 set an atom's AtomICoord More...
 
- Public Member Functions inherited from core::chemical::PatchOperation
 ~PatchOperation () override
 Automatically generated virtual destructor for class deriving directly from VirtualBase. More...
 
virtual utility::vector1
< std::string > 
adds_atoms ()
 Which atom(s), if any, is/are added. Used for fast matching of ResidueType/Patches to PDB residues. More...
 
virtual std::string deletes_atom ()
 Which atom, if any, is deleted. Used for fast matching of ResidueType/Patches to PDB residues. More...
 
virtual std::string adds_property () const
 Which property, if any, is added. More...
 
virtual ResidueProperty adds_property_enum () const
 Which property, if any, is added. More...
 
virtual std::string deletes_property () const
 Which property, if any, is deleted. More...
 
virtual ResidueProperty deletes_property_enum () const
 Which property, if any, is deleted. More...
 
virtual std::string deletes_variant () const
 Which variant, if any, is deleted. More...
 
virtual VariantType deletes_variant_enum () const
 Which variant, if any, is deleted, by enum. More...
 
virtual bool may_change_aa ()
 Generates a new aa. More...
 
virtual bool changes_connections_on (ResidueType const &, std::string const &) const
 Can this case change connections for the atom on the residue? More...
 
virtual std::string generates_name3 ()
 Generates name3. More...
 
virtual std::string generates_interchangeability_group ()
 Generates interchangeability_group. More...
 
virtual bool generates_base_residue ()
 Generates base residue – legacy for D_AA – do not use otherwise. More...
 
virtual bool applies_to_placeholder () const
 Special – does this apply to 'minimal', placeholder types? Generally true, unless updating aa or name3. More...
 

Private Attributes

std::string atom_
 atom's name More...
 
Real phi_
 AtomICoord data. More...
 
Real theta_
 
Real d_
 
std::string stub1_
 
std::string stub2_
 
std::string stub3_
 

Detailed Description

set an atom's AtomICoord

Constructor & Destructor Documentation

core::chemical::SetICoor::SetICoor ( std::string const &  atom_in,
Real const  phi_in,
Real const  theta_in,
Real const  d_in,
std::string const &  stub1_in,
std::string const &  stub2_in,
std::string const &  stub3_in 
)

constructor

Member Function Documentation

bool core::chemical::SetICoor::apply ( MutableResidueType rsd) const
overridevirtual
std::string core::chemical::SetICoor::name ( ) const
overridevirtual

Return the name of this PatchOperation ("SetICoor").

Author
Vikram K. Mulligan (vmull.nosp@m.ig@u.nosp@m.w.edu).

Implements core::chemical::PatchOperation.

Member Data Documentation

std::string core::chemical::SetICoor::atom_
private

atom's name

Referenced by apply().

Real core::chemical::SetICoor::d_
private

Referenced by apply().

Real core::chemical::SetICoor::phi_
private

AtomICoord data.

Referenced by apply().

std::string core::chemical::SetICoor::stub1_
private

Referenced by apply().

std::string core::chemical::SetICoor::stub2_
private

Referenced by apply().

std::string core::chemical::SetICoor::stub3_
private

Referenced by apply().

Real core::chemical::SetICoor::theta_
private

Referenced by apply().


The documentation for this class was generated from the following files: