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AntibodyDesignMover.cc File Reference

Class that initially designs antibodies through grafting using an AntibodyDatabase + North_AHO numbering scheme. More...

#include <protocols/antibody/design/AntibodyDesignMover.hh>
#include <protocols/antibody/design/AntibodyDesignMoverCreator.hh>
#include <protocols/antibody/clusters/CDRClusterEnum.hh>
#include <protocols/antibody/clusters/util.hh>
#include <protocols/antibody/AntibodyInfo.hh>
#include <protocols/antibody/AntibodyEnum.hh>
#include <protocols/antibody/util.hh>
#include <protocols/antibody/constraints/ParatopeSiteConstraintMover.hh>
#include <protocols/antibody/constraints/ParatopeEpitopeSiteConstraintMover.hh>
#include <protocols/antibody/constraints/CDRDihedralConstraintMover.hh>
#include <protocols/antibody/constraints/util.hh>
#include <protocols/antibody/database/AntibodyDatabaseManager.hh>
#include <protocols/antibody/design/GeneralAntibodyModeler.hh>
#include <protocols/antibody/design/AntibodySeqDesignTFCreator.hh>
#include <protocols/antibody/design/MutateFrameworkForCluster.hh>
#include <protocols/antibody/design/util.hh>
#include <protocols/antibody/design/AntibodyDesignEnumManager.hh>
#include <protocols/antibody/design/NativeAntibodySeq.hh>
#include <protocols/viewer/viewers.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/constraints/util.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <basic/datacache/DataCache.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/util.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/conformation/Conformation.hh>
#include <protocols/jd2/util.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/monte_carlo/MonteCarloInterface.hh>
#include <protocols/analysis/InterfaceAnalyzerMover.hh>
#include <protocols/moves/DsspMover.hh>
#include <protocols/simple_moves/BackboneMover.hh>
#include <protocols/simple_moves/DeleteChainsMover.hh>
#include <protocols/grafting/CCDEndsGraftMover.hh>
#include <protocols/grafting/AnchoredGraftMover.hh>
#include <protocols/grafting/util.hh>
#include <protocols/forge/methods/chainbreak_eval.hh>
#include <protocols/docking/DockingInitialPerturbation.hh>
#include <protocols/docking/util.hh>
#include <protocols/loops/util.hh>
#include <protocols/loops/loops_main.hh>
#include <protocols/simple_task_operations/RestrictToInterface.hh>
#include <numeric/random/random.hh>
#include <numeric/random/WeightedSampler.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/antibody.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/citation_manager/CitationCollection.hh>
#include <basic/citation_manager/CitationManager.hh>
#include <basic/citation_manager/UnpublishedModuleInfo.hh>
#include <cmath>
#include <basic/Tracer.hh>
#include <utility/py/PyAssert.hh>
#include <map>
#include <iterator>
#include <boost/algorithm/string.hpp>
#include <utility/string_util.hh>
#include <utility/tag/Tag.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::antibody
 
 protocols::antibody::design
 

Functions

static basic::Tracer TR ("protocols.antibody.design.AntibodyDesignMover")
 

Detailed Description

Class that initially designs antibodies through grafting using an AntibodyDatabase + North_AHO numbering scheme.

Author
Jared Adolf-Bryfogle (jadol.nosp@m.fbr@.nosp@m.gmail.nosp@m..com)

Function Documentation

static basic::Tracer TR ( "protocols.antibody.design.AntibodyDesignMover"  )
static