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protocols::simple_task_operations::RestrictToInterface Class Reference

#include <RestrictToInterface.hh>

Inheritance diagram for protocols::simple_task_operations::RestrictToInterface:
Inheritance graph
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Public Types

typedef
core::pack::task::operation::TaskOperation 
TaskOperation
 
typedef
core::pack::task::operation::TaskOperationOP 
TaskOperationOP
 
typedef InterfaceTaskOperation parent
 
- Public Types inherited from protocols::simple_task_operations::InterfaceTaskOperation
typedef
core::pack::task::operation::TaskOperation 
TaskOperation
 
typedef
core::pack::task::operation::TaskOperationOP 
TaskOperationOP
 
typedef TaskOperation parent
 
- Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP TagCOP
 
typedef basic::datacache::DataMap DataMap
 
typedef pose::Pose Pose
 

Public Member Functions

 RestrictToInterface ()
 
 RestrictToInterface (int rb_jump_in, core::Real distance_in=8)
 
 RestrictToInterface (utility::vector1_int rb_jump_in, core::Real distance_in=8, bool include_all_water_in=false)
 Constructor with arguments for multiple jumps. More...
 
 RestrictToInterface (utility::vector1_int rb_jump_in, ObjexxFCL::FArray1D_bool loop_residues)
 
 RestrictToInterface (ObjexxFCL::FArray1D_bool loop_residues)
 
 RestrictToInterface (utility::vector1< bool > loop_residues)
 
 ~RestrictToInterface () override
 
void add_jump (int rb_jump_in)
 
TaskOperationOP clone () const override
 Create another task operation of the type matching the most-derived version of the class. More...
 
void rb_jump (int jump_in)
 
void rb_chain (int chain_in)
 
void distance (core::Real const distance_in)
 
void symmetric_task (core::pose::Pose const &pose, core::pack::task::PackerTask &task) const
 
void apply (core::pose::Pose const &pose, core::pack::task::PackerTask &task) const override
 Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
 
void parse_tag (TagCOP, DataMap &) override
 Used to parse an xml-like tag to load parameters and properties. More...
 
- Public Member Functions inherited from protocols::simple_task_operations::InterfaceTaskOperation
 InterfaceTaskOperation ()
 
 InterfaceTaskOperation (InterfaceTaskOperation const &old_instance)
 
 ~InterfaceTaskOperation () override
 
void set_movable_jumps (utility::vector1_int const &movable_jumps)
 
void add_movable_jump (int const additional_jump)
 
void set_movable_chains (utility::vector1_int const &movable_chains)
 
void add_movable_chain (int const additional_chain)
 
utility::vector1_int const & movable_jumps () const
 
utility::vector1_int const & movable_chains () const
 
- Public Member Functions inherited from core::pack::task::operation::TaskOperation
 ~TaskOperation () override
 
virtual bool task_operation_provides_citation_info () const
 Does this task operation provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool task_operation_is_unpublished () const
 Does this task_operation indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 
static std::string keyname ()
 
- Static Public Member Functions inherited from protocols::simple_task_operations::InterfaceTaskOperation
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 
static std::string keyname ()
 

Private Attributes

core::Real distance_
 
bool loopy_interface_
 
bool include_all_water_
 
ObjexxFCL::FArray1D_bool loop_residues_
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::simple_task_operations::RestrictToInterface::RestrictToInterface ( )
inline
protocols::simple_task_operations::RestrictToInterface::RestrictToInterface ( int  rb_jump_in,
core::Real  distance_in = 8 
)
inline
protocols::simple_task_operations::RestrictToInterface::RestrictToInterface ( utility::vector1_int  rb_jump_in,
core::Real  distance_in = 8,
bool  include_all_water_in = false 
)
inline

Constructor with arguments for multiple jumps.

References protocols::simple_task_operations::InterfaceTaskOperation::set_movable_jumps().

protocols::simple_task_operations::RestrictToInterface::RestrictToInterface ( utility::vector1_int  rb_jump_in,
ObjexxFCL::FArray1D_bool  loop_residues 
)
inline
protocols::simple_task_operations::RestrictToInterface::RestrictToInterface ( ObjexxFCL::FArray1D_bool  loop_residues)
inline

References loop_residues_.

protocols::simple_task_operations::RestrictToInterface::RestrictToInterface ( utility::vector1< bool loop_residues)
protocols::simple_task_operations::RestrictToInterface::~RestrictToInterface ( )
overridedefault

Member Function Documentation

void protocols::simple_task_operations::RestrictToInterface::add_jump ( int  rb_jump_in)
inline
void protocols::simple_task_operations::RestrictToInterface::apply ( core::pose::Pose const &  ,
core::pack::task::PackerTask  
) const
overridevirtual
core::pack::task::operation::TaskOperationOP protocols::simple_task_operations::RestrictToInterface::clone ( ) const
overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

void protocols::simple_task_operations::RestrictToInterface::distance ( core::Real const  distance_in)
static std::string protocols::simple_task_operations::RestrictToInterface::keyname ( )
inlinestatic
void protocols::simple_task_operations::RestrictToInterface::parse_tag ( TagCOP  tag,
DataMap  
)
overridevirtual
void protocols::simple_task_operations::RestrictToInterface::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::simple_task_operations::RestrictToInterface::rb_chain ( int  chain_in)
void protocols::simple_task_operations::RestrictToInterface::rb_jump ( int  jump_in)
void protocols::simple_task_operations::RestrictToInterface::symmetric_task ( core::pose::Pose const &  pose,
core::pack::task::PackerTask task 
) const

Member Data Documentation

core::Real protocols::simple_task_operations::RestrictToInterface::distance_
private

Referenced by apply(), distance(), and parse_tag().

bool protocols::simple_task_operations::RestrictToInterface::include_all_water_
private

Referenced by apply(), and parse_tag().

ObjexxFCL::FArray1D_bool protocols::simple_task_operations::RestrictToInterface::loop_residues_
private

Referenced by apply(), and RestrictToInterface().

bool protocols::simple_task_operations::RestrictToInterface::loopy_interface_
private

Referenced by apply().


The documentation for this class was generated from the following files: