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protocols::protein_interface_design::filters::StubScoreFilter Class Reference

#include <StubScoreFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::StubScoreFilter:
Inheritance graph
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Public Member Functions

 StubScoreFilter ()
 default ctor More...
 
bool apply (core::pose::Pose const &pose) const override
 Constructor with a single target residue. More...
 
void report (std::ostream &out, core::pose::Pose const &pose) const override
 
core::Real report_sm (core::pose::Pose const &pose) const override
 used to report filter internals through a score or silent file More...
 
protocols::filters::FilterOP clone () const override
 
protocols::filters::FilterOP fresh_instance () const override
 
core::Real compute (core::pose::Pose const &pose) const
 
 ~StubScoreFilter () override
 
void stub_sets (utility::vector1< StubSetStubPos > const &stub_sets)
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
 Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
 
std::string name () const override
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
 ~Filter () override
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual bool filter_provides_citation_info () const
 Does this filter provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool filter_is_unpublished () const
 Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static std::string class_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Private Types

typedef protocols::filters::Filter parent
 
typedef std::pair
< protocols::hotspot_hashing::HotspotStubSetOP,
std::pair
< protocols::hotspot_hashing::HotspotStubOP,
core::Size > > 
StubSetStubPos
 

Private Attributes

utility::vector1< StubSetStubPosstub_sets_
 
core::pose::PoseCOP reference_pose_
 
core::Size host_chain_
 
core::Real cb_force_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::StubScoreFilter::StubScoreFilter ( )

default ctor

protocols::protein_interface_design::filters::StubScoreFilter::~StubScoreFilter ( )
overridedefault

Member Function Documentation

bool protocols::protein_interface_design::filters::StubScoreFilter::apply ( core::pose::Pose const &  pose) const
overridevirtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

References compute(), and protocols::protein_interface_design::filters::TR().

std::string protocols::protein_interface_design::filters::StubScoreFilter::class_name ( )
static
protocols::filters::FilterOP protocols::protein_interface_design::filters::StubScoreFilter::clone ( ) const
overridevirtual
core::Real protocols::protein_interface_design::filters::StubScoreFilter::compute ( core::pose::Pose const &  pose) const
protocols::filters::FilterOP protocols::protein_interface_design::filters::StubScoreFilter::fresh_instance ( ) const
overridevirtual
std::string protocols::protein_interface_design::filters::StubScoreFilter::name ( ) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::protein_interface_design::filters::StubScoreFilter::parse_my_tag ( utility::tag::TagCOP  ,
basic::datacache::DataMap &   
)
overridevirtual
void protocols::protein_interface_design::filters::StubScoreFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::protein_interface_design::filters::StubScoreFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::protein_interface_design::filters::StubScoreFilter::report_sm ( core::pose::Pose const &  ) const
overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

void protocols::protein_interface_design::filters::StubScoreFilter::stub_sets ( utility::vector1< StubSetStubPos > const &  stub_sets)

References stub_sets_.

Member Data Documentation

core::Real protocols::protein_interface_design::filters::StubScoreFilter::cb_force_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::StubScoreFilter::host_chain_
private

Referenced by compute(), and parse_my_tag().

core::pose::PoseCOP protocols::protein_interface_design::filters::StubScoreFilter::reference_pose_
private

Referenced by compute(), and parse_my_tag().

utility::vector1< StubSetStubPos > protocols::protein_interface_design::filters::StubScoreFilter::stub_sets_
private

Referenced by compute(), parse_my_tag(), and stub_sets().


The documentation for this class was generated from the following files: