#include <StubScoreFilter.hh>
Public Member Functions | |
| StubScoreFilter () | |
| default ctor More... | |
| bool | apply (core::pose::Pose const &pose) const override |
| Constructor with a single target residue. More... | |
| void | report (std::ostream &out, core::pose::Pose const &pose) const override |
| core::Real | report_sm (core::pose::Pose const &pose) const override |
| used to report filter internals through a score or silent file More... | |
| protocols::filters::FilterOP | clone () const override |
| protocols::filters::FilterOP | fresh_instance () const override |
| core::Real | compute (core::pose::Pose const &pose) const |
| ~StubScoreFilter () override | |
| void | stub_sets (utility::vector1< StubSetStubPos > const &stub_sets) |
| void | parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override |
| Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More... | |
| std::string | name () const override |
 Public Member Functions inherited from protocols::filters::Filter | |
| Filter () | |
| Filter (std::string const &) | |
| ~Filter () override | |
| virtual std::string | get_type () const |
| std::string | get_user_defined_name () const |
| void | set_user_defined_name (std::string const &name) |
| virtual void | clear () |
| used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More... | |
| virtual core::Real | score (core::pose::Pose &pose) |
| virtual void | provide_citation_info (basic::citation_manager::CitationCollectionList &) const |
| Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More... | |
Static Public Member Functions | |
| static std::string | class_name () |
| static void | provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd) |
Private Types | |
| typedef protocols::filters::Filter | parent |
| typedef std::pair< protocols::hotspot_hashing::HotspotStubSetOP, std::pair< protocols::hotspot_hashing::HotspotStubOP, core::Size > > | StubSetStubPos |
Private Attributes | |
| utility::vector1< StubSetStubPos > | stub_sets_ |
| core::pose::PoseCOP | reference_pose_ |
| core::Size | host_chain_ |
| core::Real | cb_force_ |
Additional Inherited Members | |
| Protected Attributes inherited from protocols::filters::Filter | |
| std::string | scorename_ |
Member Typedef Documentation
◆ parent
|
private |
◆ StubSetStubPos
| private |
Constructor & Destructor Documentation
◆ StubScoreFilter()
| protocols::protein_interface_design::filters::StubScoreFilter::StubScoreFilter | ( | ) |
default ctor
◆ ~StubScoreFilter()
|
overridedefault |
Member Function Documentation
◆ apply()
|
overridevirtual |
Constructor with a single target residue.
Implements protocols::filters::Filter.
References compute(), and protocols::protein_interface_design::filters::TR().
◆ class_name()
|
static |
◆ clone()
|
overridevirtual |
Implements protocols::filters::Filter.
◆ compute()
| core::Real protocols::protein_interface_design::filters::StubScoreFilter::compute | ( | core::pose::Pose const & | pose | ) | const |
References core::scoring::backbone_stub_constraint, protocols::protein_interface_design::movers::PlacementMinimizationMover::cb_force(), cb_force_, protocols::score_filters::ScoreTypeFilter::compute(), protocols::protein_interface_design::movers::PlacementMinimizationMover::host_chain(), host_chain_, protocols::protein_interface_design::movers::make_stub_scorefxn(), reference_pose_, protocols::protein_interface_design::movers::PlacementMinimizationMover::refresh_bbstub_constraints(), protocols::hotspot_hashing::remove_hotspot_constraints_from_pose(), protocols::protein_interface_design::movers::PlacementMinimizationMover::set_reference_pose(), protocols::protein_interface_design::movers::PlacementMinimizationMover::stub_sets(), stub_sets_, and protocols::protein_interface_design::filters::TR().
Referenced by apply(), report(), and report_sm().
◆ fresh_instance()
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overridevirtual |
Implements protocols::filters::Filter.
◆ name()
|
overridevirtual |
Reimplemented from protocols::filters::Filter.
References class_name().
◆ parse_my_tag()
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overridevirtual |
Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.
Reimplemented from protocols::filters::Filter.
References cb_force_, class_name(), host_chain_, protocols::rosetta_scripts::legacy_saved_pose_or_input(), protocols::protein_interface_design::movers::parse_stub_sets(), reference_pose_, stub_sets_, and protocols::protein_interface_design::filters::TR().
◆ provide_xml_schema()
|
static |
References protocols::protein_interface_design::movers::add_subelement_for_parse_stub_sets(), core::pose::attributes_for_saved_reference_pose_w_description(), class_name(), and protocols::filters::xsd_type_definition_w_attributes_and_repeatable_subelements().
Referenced by protocols::protein_interface_design::filters::StubScoreFilterCreator::provide_xml_schema().
◆ report()
|
overridevirtual |
Reimplemented from protocols::filters::Filter.
References compute(), and core::conformation::membrane::out.
◆ report_sm()
|
overridevirtual |
used to report filter internals through a score or silent file
Reimplemented from protocols::filters::Filter.
References compute().
◆ stub_sets()
| void protocols::protein_interface_design::filters::StubScoreFilter::stub_sets | ( | utility::vector1< StubSetStubPos > const & | stub_sets | ) |
References stub_sets_.
Member Data Documentation
◆ cb_force_
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private |
Referenced by compute(), and parse_my_tag().
◆ host_chain_
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private |
Referenced by compute(), and parse_my_tag().
◆ reference_pose_
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private |
Referenced by compute(), and parse_my_tag().
◆ stub_sets_
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private |
Referenced by compute(), parse_my_tag(), and stub_sets().
The documentation for this class was generated from the following files:
- src/protocols/protein_interface_design/filters/StubScoreFilter.hh
- src/protocols/protein_interface_design/filters/StubScoreFilter.cc
