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protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation Class Reference

#include <RestrictIdentitiesAtAlignedPositions.hh>

Inheritance diagram for protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation:
Inheritance graph
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Public Types

typedef RestrictOperationsBase parent
 
- Public Types inherited from protocols::task_operations::RestrictOperationsBase
typedef
core::pack::task::operation::TaskOperation 
TaskOperation
 
typedef
core::pack::task::operation::TaskOperationOP 
TaskOperationOP
 
typedef TaskOperation parent
 
- Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP TagCOP
 
typedef basic::datacache::DataMap DataMap
 
typedef pose::Pose Pose
 

Public Member Functions

 RestrictIdentitiesAtAlignedPositionsOperation ()
 
 ~RestrictIdentitiesAtAlignedPositionsOperation () override
 
TaskOperationOP clone () const override
 Create another task operation of the type matching the most-derived version of the class. More...
 
void apply (core::pose::Pose const &, core::pack::task::PackerTask &) const override
 Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
 
void parse_tag (TagCOP, DataMap &) override
 Used to parse an xml-like tag to load parameters and properties. More...
 
utility::vector1< core::Sizeres_ids () const
 
void res_ids (utility::vector1< core::Size > const &s)
 
void source_pose (std::string const &s)
 
void chain (core::Size const c)
 
core::Size chain () const
 
void design_only_target_residues (bool const b)
 
bool design_only_target_residues () const
 
bool prevent_repacking () const
 
void prevent_repacking (bool const b)
 
void keep_aas (std::string const &s)
 
std::string keep_aas () const
 
void restrict_identities (bool const b)
 
bool restrict_identities () const
 
void repack_shell (core::Real r)
 
core::Real repack_shell ()
 
core::Real design_shell ()
 
void design_shell (core::Real r)
 
- Public Member Functions inherited from protocols::task_operations::RestrictOperationsBase
 RestrictOperationsBase ()
 
 ~RestrictOperationsBase () override
 
- Public Member Functions inherited from core::pack::task::operation::TaskOperation
 ~TaskOperation () override
 
virtual void provide_citation_info (basic::citation_manager::CitationCollectionList &) const
 Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...
 

Static Public Member Functions

static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 
static std::string keyname ()
 

Private Attributes

core::pose::PoseOP source_pose_
 
utility::vector1< core::Sizeres_ids_
 
core::Size chain_
 
bool design_only_target_residues_
 
bool prevent_repacking_
 
std::string keep_aas_
 
bool restrict_identities_
 
core::Real design_shell_
 
core::Real repack_shell_
 

Additional Inherited Members

- Protected Member Functions inherited from protocols::task_operations::RestrictOperationsBase
void run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
 this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...
 

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::RestrictIdentitiesAtAlignedPositionsOperation ( )

References res_ids_, and source_pose_.

protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::~RestrictIdentitiesAtAlignedPositionsOperation ( )
override

Member Function Documentation

void protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::apply ( core::pose::Pose const &  ,
core::pack::task::PackerTask  
) const
overridevirtual
void protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::chain ( core::Size const  c)
inline

References core::pack::dunbrack::c, and chain_.

core::Size protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::chain ( ) const
inline

References chain_.

Referenced by apply(), and parse_tag().

core::pack::task::operation::TaskOperationOP protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::clone ( ) const
overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements protocols::task_operations::RestrictOperationsBase.

void protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::design_only_target_residues ( bool const  b)
inline
bool protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::design_only_target_residues ( ) const
inline

References design_only_target_residues_.

Referenced by apply(), and parse_tag().

core::Real protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::design_shell ( )
inline

References design_shell_.

Referenced by parse_tag().

void protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::design_shell ( core::Real  r)
inline

References design_shell_.

void protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::keep_aas ( std::string const &  s)
inline

References keep_aas_.

std::string protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::keep_aas ( ) const
inline

References keep_aas_.

static std::string protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::keyname ( )
inlinestatic
void protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::parse_tag ( TagCOP  tag,
DataMap  
)
overridevirtual
bool protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::prevent_repacking ( ) const
inline

References prevent_repacking_.

Referenced by apply(), and parse_tag().

void protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::prevent_repacking ( bool const  b)
inline
void protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::repack_shell ( core::Real  r)
inline

References repack_shell_.

core::Real protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::repack_shell ( )
inline

References repack_shell_.

Referenced by parse_tag().

utility::vector1< core::Size > protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::res_ids ( ) const
inline

References res_ids_.

void protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::res_ids ( utility::vector1< core::Size > const &  s)
inline

References res_ids_.

void protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::restrict_identities ( bool const  b)
inline
bool protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::restrict_identities ( ) const
inline

References restrict_identities_.

Referenced by apply(), and parse_tag().

void protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::source_pose ( std::string const &  s)

Member Data Documentation

core::Size protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::chain_
private

Referenced by chain().

bool protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::design_only_target_residues_
private
core::Real protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::design_shell_
private

Referenced by apply(), and design_shell().

std::string protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::keep_aas_
private

Referenced by apply(), keep_aas(), and parse_tag().

bool protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::prevent_repacking_
private

Referenced by prevent_repacking().

core::Real protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::repack_shell_
private

Referenced by apply(), and repack_shell().

utility::vector1< core::Size > protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::res_ids_
private
bool protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::restrict_identities_
private

Referenced by restrict_identities().

core::pose::PoseOP protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::source_pose_
private

The documentation for this class was generated from the following files: