#include <PoseInputStream.hh>

Inheritance diagram for core::import_pose::pose_stream::PoseInputStream:

[legend]

Public Member Functions
	PoseInputStream ()

	~PoseInputStream () override

virtual bool	has_another_pose ()=0

virtual void	reset ()=0

virtual void	fill_pose (core::pose::Pose &, core::chemical::ResidueTypeSet const &, bool const metapatches=true)=0

virtual void	fill_pose (core::pose::Pose &, bool const metapatches=true)=0

virtual std::string	get_last_pose_descriptor_string () const =0
	Get a string describing the last pose and where it came from. More...

virtual utility::vector1< core::pose::PoseOP >	get_all_poses (core::chemical::ResidueTypeSet const &residue_set)

void	preprocess_pose (core::pose::Pose &pose)
	Perform common operations on a Pose dependent on command-line options before finishing fill_pose. This includes optimizing hydrogens, adding constraints, and finding disulfides. This should be called in the fill_pose method of derived classes. More...

Constructor & Destructor Documentation

◆ PoseInputStream()

core::import_pose::pose_stream::PoseInputStream::PoseInputStream ( )

inline

◆ ~PoseInputStream()

core::import_pose::pose_stream::PoseInputStream::~PoseInputStream ( )

inlineoverride

Member Function Documentation

◆ fill_pose() [1/2]

virtual void core::import_pose::pose_stream::PoseInputStream::fill_pose	(	core::pose::Pose &	,
		bool const	metapatches = `true`
	)

pure virtual

Implemented in core::import_pose::pose_stream::SilentFilePoseInputStream, core::import_pose::pose_stream::PDBPoseInputStream, core::import_pose::pose_stream::MetaPoseInputStream, core::import_pose::pose_stream::LazySilentFilePoseInputStream, and core::import_pose::pose_stream::ExtendedPoseInputStream.

◆ fill_pose() [2/2]

virtual void core::import_pose::pose_stream::PoseInputStream::fill_pose	(	core::pose::Pose &	,
		core::chemical::ResidueTypeSet const &	,
		bool const	metapatches = `true`
	)

pure virtual

Implemented in core::import_pose::pose_stream::SilentFilePoseInputStream, core::import_pose::pose_stream::PDBPoseInputStream, core::import_pose::pose_stream::MetaPoseInputStream, core::import_pose::pose_stream::LazySilentFilePoseInputStream, and core::import_pose::pose_stream::ExtendedPoseInputStream.

Referenced by get_all_poses().

◆ get_all_poses()

utility::vector1< core::pose::PoseOP > core::import_pose::pose_stream::PoseInputStream::get_all_poses ( core::chemical::ResidueTypeSet const & residue_set )

virtual

Reimplemented in core::import_pose::pose_stream::PDBPoseInputStream.

References fill_pose(), has_another_pose(), and reset().

◆ get_last_pose_descriptor_string()

virtual std::string core::import_pose::pose_stream::PoseInputStream::get_last_pose_descriptor_string ( ) const

pure virtual

Get a string describing the last pose and where it came from.

Implemented by child classes. Typically, filename + number from file + input tag.

Author: Vikram K. Mulligan (vmull.nosp@m.igan.nosp@m.@flat.nosp@m.iron.nosp@m.insti.nosp@m.tute.nosp@m..org).

Implemented in core::import_pose::pose_stream::SilentFilePoseInputStream, core::import_pose::pose_stream::PDBPoseInputStream, core::import_pose::pose_stream::MetaPoseInputStream, core::import_pose::pose_stream::LazySilentFilePoseInputStream, and core::import_pose::pose_stream::ExtendedPoseInputStream.

◆ has_another_pose()

virtual bool core::import_pose::pose_stream::PoseInputStream::has_another_pose ( )

pure virtual

Implemented in core::import_pose::pose_stream::SilentFilePoseInputStream, core::import_pose::pose_stream::PDBPoseInputStream, core::import_pose::pose_stream::MetaPoseInputStream, core::import_pose::pose_stream::LazySilentFilePoseInputStream, and core::import_pose::pose_stream::ExtendedPoseInputStream.

Referenced by get_all_poses().

◆ preprocess_pose()

void core::import_pose::pose_stream::PoseInputStream::preprocess_pose ( core::pose::Pose & pose )

Perform common operations on a Pose dependent on command-line options before finishing fill_pose. This includes optimizing hydrogens, adding constraints, and finding disulfides. This should be called in the fill_pose method of derived classes.

References core::pack::interaction_graph::debug, and core::pose::initialize_disulfide_bonds().

Referenced by core::import_pose::pose_stream::LazySilentFilePoseInputStream::fill_pose(), core::import_pose::pose_stream::PDBPoseInputStream::fill_pose(), and core::import_pose::pose_stream::SilentFilePoseInputStream::fill_pose().