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Namespaces | Macros | Typedefs | Functions
util.hh File Reference
#include <protocols/stepwise/modeler/rna/rigid_body/FloatingBaseClasses.fwd.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/types.hh>
#include <utility/vector1.hh>
#include <numeric/xyzMatrix.hh>
#include <core/conformation/Residue.fwd.hh>
#include <map>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::stepwise
 
 protocols::stepwise::modeler
 
 protocols::stepwise::modeler::rna
 
 protocols::stepwise::modeler::rna::rigid_body
 

Macros

#define STANDARD_CENTROID_BIN_SIZE   1.0
 
#define STANDARD_EULER_ANGLE_BIN_SIZE   20
 
#define STANDARD_EULER_Z_BIN_SIZE   0.05
 

Typedefs

typedef numeric::xyzMatrix< core::RealMatrix
 

Functions

core::Real protocols::stepwise::modeler::rna::rigid_body::get_max_centroid_to_atom_distance (utility::vector1< core::conformation::ResidueOP > const &rsd_at_origin_list, std::string const &atom_name)
 
void protocols::stepwise::modeler::rna::rigid_body::initialize_xyz_parameters (Distance &max_distance, Distance &max_distance_squared, int &centroid_bin_min, int &centroid_bin_max, utility::vector1< core::conformation::ResidueOP > const &moving_rsd_at_origin_list, core::Size const gap_size_to_anchor)
 
utility::vector1< core::pose::PoseOPprotocols::stepwise::modeler::rna::rigid_body::setup_pose_with_moving_residue_alternative_list (pose::Pose const &pose, core::Size const &moving_res, bool const extra_chi, bool const use_phenix_geo)
 
int protocols::stepwise::modeler::rna::rigid_body::DOF_bin_value (BaseBin const &base_bin, std::string const &DOF)
 
Real protocols::stepwise::modeler::rna::rigid_body::DOF_bin_size (std::string const &DOF)
 
void protocols::stepwise::modeler::rna::rigid_body::analyze_base_bin_map (std::map< BaseBin, int, compare_base_bin > const &base_bin_map, std::string const &foldername)
 
void protocols::stepwise::modeler::rna::rigid_body::analyze_base_bin_map (std::map< BaseBin, int, compare_base_bin > const &base_bin_map, std::string const &DOF_one, std::string const &DOF_two, std::string const &foldername)
 

Detailed Description

Author
Parin Sripakdeevong

Macro Definition Documentation

◆ STANDARD_CENTROID_BIN_SIZE

#define STANDARD_CENTROID_BIN_SIZE   1.0

◆ STANDARD_EULER_ANGLE_BIN_SIZE

#define STANDARD_EULER_ANGLE_BIN_SIZE   20

◆ STANDARD_EULER_Z_BIN_SIZE

#define STANDARD_EULER_Z_BIN_SIZE   0.05

Typedef Documentation

◆ Matrix

typedef numeric::xyzMatrix< core::Real > Matrix