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Rosetta
2021.07
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select jumps to build a given topology this class encapsulates the functionality of choose_random_pairings in jumping_pairings.cc of Rosetta++ More...
#include <RandomSheetBuilder.hh>
Public Member Functions | |
RandomSheetBuilder (core::fragment::SecondaryStructureOP, core::scoring::dssp::PairingsList const &, SheetTopology const &) | |
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SheetBuilder (core::fragment::SecondaryStructureOP, core::scoring::dssp::PairingsList const &, SheetTopology const &) | |
SheetBuilder (SheetBuilder const &) | |
~SheetBuilder () override | |
std::string | type_name () const override |
JumpSample | create_jump_sample () const override |
JumpSample | clean_jumps (JumpSample const &js) const override |
take from a given JumpSample only those Jumps, which could also have been created by create_jump_sample() More... | |
core::Size | total_residue () const |
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~BaseJumpSetup () override | |
Automatically generated virtual destructor for class deriving directly from VirtualBase. More... | |
virtual core::fragment::FragSetOP | generate_jump_frags (JumpSample const &, core::kinematics::MoveMap const &mm) const |
returns an ordered FragSet that is compatible with the JumpSample default: generate jumps from ss-library according to JumpSample More... | |
Protected Member Functions | |
SheetTopology | create_new_random_topol () const override |
std::string | type_name () const override |
Private Attributes | |
SheetTopology | input_sheet_sizes_ |
Additional Inherited Members | |
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typedef utility::vector1 < core::Size > | SheetTopology |
select jumps to build a given topology this class encapsulates the functionality of choose_random_pairings in jumping_pairings.cc of Rosetta++
protocols::jumping::RandomSheetBuilder::RandomSheetBuilder | ( | core::fragment::SecondaryStructureOP | ss, |
core::scoring::dssp::PairingsList const & | pairings, | ||
SheetTopology const & | sheet_topol | ||
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overrideprotectedvirtual |
Reimplemented from protocols::jumping::SheetBuilder.
References input_sheet_sizes_, protocols::mean_field::max(), core::scoring::rg, and protocols::jumping::tr().
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inlineoverrideprotectedvirtual |
Implements protocols::jumping::BaseJumpSetup.
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private |
Referenced by create_new_random_topol().