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Namespaces | Functions
StepWisePoseAligner.cc File Reference
#include <protocols/stepwise/modeler/align/StepWisePoseAligner.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/VariantType.hh>
#include <core/chemical/rna/util.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/util.hh>
#include <core/kinematics/AtomTree.hh>
#include <core/kinematics/tree/Atom.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/pose/Pose.hh>
#include <core/pose/full_model_info/FullModelInfo.hh>
#include <core/pose/full_model_info/FullModelParameters.hh>
#include <core/pose/full_model_info/util.hh>
#include <core/pose/rna/util.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/func/FlatHarmonicFunc.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <utility/string_util.hh>
#include <ObjexxFCL/format.hh>
#include <basic/Tracer.hh>
#include <unordered_set>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::stepwise
 
 protocols::stepwise::modeler
 
 protocols::stepwise::modeler::align
 

Functions

static basic::Tracer TR ("protocols.stepwise.modeler.align.StepWisePoseAligner")
 
std::unordered_set
< std::string > const 
protocols::stepwise::modeler::align::extra_suite_atoms_upper ({" P "," OP1"," OP2"," O5'","XO3'"})
 
std::unordered_set
< std::string > const 
protocols::stepwise::modeler::align::extra_suite_atoms_lower ({" O ","YP ","YOP2","YOP1","YO5'"})
 
bool protocols::stepwise::modeler::align::match_up_to_rna_dna (char const nt1, char const nt2)
 

Detailed Description

Author
Rhiju Das, rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu

Function Documentation

static basic::Tracer TR ( "protocols.stepwise.modeler.align.StepWisePoseAligner"  )
static