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Namespaces | Enumerations
VariantType.hh File Reference

Enumeration definition for VariantType. More...

Namespaces

 core
 A class for reading in the atom type properties.
 
 core::chemical
 

Enumerations

enum  core::chemical::VariantType {
  core::chemical::NO_VARIANT = 0, core::chemical::FIRST_VARIANT = 1, core::chemical::UPPER_TERMINUS_VARIANT = 1, core::chemical::LOWER_TERMINUS_VARIANT,
  core::chemical::UPPERTERM_TRUNC_VARIANT, core::chemical::LOWERTERM_TRUNC_VARIANT, core::chemical::PHOSPHONATE_UPPER_VARIANT, core::chemical::CUTPOINT_LOWER,
  core::chemical::CUTPOINT_UPPER, core::chemical::NTERM_CONNECT, core::chemical::CTERM_CONNECT, core::chemical::DISULFIDE,
  core::chemical::SC_BRANCH_POINT, core::chemical::C1_BRANCH_POINT, core::chemical::C2_BRANCH_POINT, core::chemical::C3_BRANCH_POINT,
  core::chemical::C4_BRANCH_POINT, core::chemical::C5_BRANCH_POINT, core::chemical::C6_BRANCH_POINT, core::chemical::C7_BRANCH_POINT,
  core::chemical::C8_BRANCH_POINT, core::chemical::C9_BRANCH_POINT, core::chemical::SIDECHAIN_CONJUGATION, core::chemical::SG_CONNECT,
  core::chemical::NE2_CONNECT, core::chemical::ZN_CONNECT, core::chemical::VIRTUAL_METAL_CONJUGATION, core::chemical::METHYLATED_NTERM_VARIANT,
  core::chemical::ACETYLATED_NTERMINUS_VARIANT, core::chemical::METHYLATED_CTERMINUS_VARIANT, core::chemical::DIMETHYLATED_CTERMINUS_VARIANT, core::chemical::OOP_PRE,
  core::chemical::OOP_POST, core::chemical::HBS_PRE, core::chemical::HBS_POST, core::chemical::A3B_HBS_PRE,
  core::chemical::A3B_HBS_POST, core::chemical::CA_CONNECT, core::chemical::CA_CONNECT2, core::chemical::CA_CONNECT3,
  core::chemical::CA_CONNECT4, core::chemical::CA_CONNECT5, core::chemical::CA_CONNECT6, core::chemical::CA_CONNECT7,
  core::chemical::OE1_CONNECT, core::chemical::OE2_CONNECT, core::chemical::OD1_CONNECT, core::chemical::OD2_CONNECT,
  core::chemical::O_CONNECT, core::chemical::OG_CONNECT, core::chemical::OG1_CONNECT, core::chemical::PROTONATED,
  core::chemical::DEPROTONATED, core::chemical::ALTERNATIVE_PROTONATION, core::chemical::METHYLATION, core::chemical::DIMETHYLATION,
  core::chemical::TRIMETHYLATION, core::chemical::ACETYLATION, core::chemical::PHOSPHORYLATION, core::chemical::SULFATION,
  core::chemical::HYDROXYLATION, core::chemical::HYDROXYLATION1, core::chemical::HYDROXYLATION2, core::chemical::CARBOXYLATION,
  core::chemical::DIIODINATION, core::chemical::N_METHYLATION, core::chemical::VIRTUAL_BB, core::chemical::VIRTUAL_SIDE_CHAIN,
  core::chemical::VIRTUAL_RESIDUE_VARIANT, core::chemical::VIRTUAL_NTERM, core::chemical::VIRTUAL_PHOSPHATE, core::chemical::VIRTUAL_DNA_PHOSPHATE,
  core::chemical::REPLS_BB, core::chemical::REPLONLY, core::chemical::REPL_PHOSPHATE, core::chemical::VIRTUAL_RIBOSE,
  core::chemical::VIRTUAL_BACKBONE_EXCEPT_C1PRIME, core::chemical::VIRTUAL_BASE, core::chemical::VIRTUAL_BASE_HEAVY_ATOM, core::chemical::VIRTUAL_RNA_RESIDUE,
  core::chemical::VIRTUAL_RNA_RESIDUE_EXCLUDE_PHOSPHATE, core::chemical::BULGE, core::chemical::VIRTUAL_O2PRIME_HYDROGEN, core::chemical::THREE_PRIME_END_OH,
  core::chemical::THREE_PRIME_PHOSPHATE, core::chemical::THREE_PRIME_AZIDE, core::chemical::THREE_PRIME_DEOXY, core::chemical::FIVE_PRIME_END_OH,
  core::chemical::FIVE_PRIME_THIOETHANOLAMINE_PHOSPHATE, core::chemical::FIVE_PRIME_END_PHOSPHATE, core::chemical::FIVE_PRIME_PHOSPHATE, core::chemical::FIVE_PRIME_RME_PHOSPHATE,
  core::chemical::FIVEPRIME_CAP, core::chemical::THREE_PRIME_TWO_PRIME_CYCLIC_PHOSPHATE, core::chemical::DEOXY_O2PRIME, core::chemical::UPPER_CONNECTION_RNA,
  core::chemical::THREE_PRIME_PACKABLE_PHOSPHATE, core::chemical::FIVE_PRIME_PACKABLE_PHOSPHATE, core::chemical::FIVE_PRIME_PACKABLE_TRIPHOSPHATE, core::chemical::PROTONATED_N1,
  core::chemical::PROTONATED_N3, core::chemical::THREE_PRIME_FIVE_PRIME_METHYL_PHOSPHATE, core::chemical::BLOCK_STACK_ABOVE, core::chemical::BLOCK_STACK_BELOW,
  core::chemical::N_ACETYLATION, core::chemical::N_FORMYLATION, core::chemical::C_METHYLAMIDATION, core::chemical::CTERM_AMIDATION,
  core::chemical::C5_METHYLATED_NA, core::chemical::ALDONIC_ACID_VARIANT, core::chemical::C2_KETOALDONIC_ACID, core::chemical::C3_KETOALDONIC_ACID,
  core::chemical::C4_KETOALDONIC_ACID, core::chemical::C5_KETOALDONIC_ACID, core::chemical::C6_KETOALDONIC_ACID, core::chemical::C7_KETOALDONIC_ACID,
  core::chemical::C8_KETOALDONIC_ACID, core::chemical::URONIC_ACID_VARIANT, core::chemical::C1_DEOXY_SUGAR, core::chemical::C2_DEOXY_SUGAR,
  core::chemical::C3_DEOXY_SUGAR, core::chemical::C4_DEOXY_SUGAR, core::chemical::C5_DEOXY_SUGAR, core::chemical::C6_DEOXY_SUGAR,
  core::chemical::C7_DEOXY_SUGAR, core::chemical::C8_DEOXY_SUGAR, core::chemical::C9_DEOXY_SUGAR, core::chemical::C1_AMINO_SUGAR,
  core::chemical::C2_AMINO_SUGAR, core::chemical::C3_AMINO_SUGAR, core::chemical::C4_AMINO_SUGAR, core::chemical::C5_AMINO_SUGAR,
  core::chemical::C6_AMINO_SUGAR, core::chemical::C7_AMINO_SUGAR, core::chemical::C8_AMINO_SUGAR, core::chemical::C9_AMINO_SUGAR,
  core::chemical::C1_ACETYLAMINO_SUGAR, core::chemical::C2_ACETYLAMINO_SUGAR, core::chemical::C3_ACETYLAMINO_SUGAR, core::chemical::C4_ACETYLAMINO_SUGAR,
  core::chemical::C5_ACETYLAMINO_SUGAR, core::chemical::C6_ACETYLAMINO_SUGAR, core::chemical::C7_ACETYLAMINO_SUGAR, core::chemical::C8_ACETYLAMINO_SUGAR,
  core::chemical::C9_ACETYLAMINO_SUGAR, core::chemical::C1_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR, core::chemical::C2_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR, core::chemical::C3_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR,
  core::chemical::C4_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR, core::chemical::C5_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR, core::chemical::C6_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR, core::chemical::C7_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR,
  core::chemical::C8_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR, core::chemical::C9_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR, core::chemical::C1_PHOSPHORYLATED_SUGAR, core::chemical::C2_PHOSPHORYLATED_SUGAR,
  core::chemical::C3_PHOSPHORYLATED_SUGAR, core::chemical::C4_PHOSPHORYLATED_SUGAR, core::chemical::C5_PHOSPHORYLATED_SUGAR, core::chemical::C6_PHOSPHORYLATED_SUGAR,
  core::chemical::C7_PHOSPHORYLATED_SUGAR, core::chemical::C8_PHOSPHORYLATED_SUGAR, core::chemical::C9_PHOSPHORYLATED_SUGAR, core::chemical::C1_SULFATED_SUGAR,
  core::chemical::C2_SULFATED_SUGAR, core::chemical::C3_SULFATED_SUGAR, core::chemical::C4_SULFATED_SUGAR, core::chemical::C5_SULFATED_SUGAR,
  core::chemical::C6_SULFATED_SUGAR, core::chemical::C7_SULFATED_SUGAR, core::chemical::C8_SULFATED_SUGAR, core::chemical::C9_SULFATED_SUGAR,
  core::chemical::C1_SULFOAMINO_SUGAR, core::chemical::C2_SULFOAMINO_SUGAR, core::chemical::C3_SULFOAMINO_SUGAR, core::chemical::C4_SULFOAMINO_SUGAR,
  core::chemical::C5_SULFOAMINO_SUGAR, core::chemical::C6_SULFOAMINO_SUGAR, core::chemical::C7_SULFOAMINO_SUGAR, core::chemical::C8_SULFOAMINO_SUGAR,
  core::chemical::C9_SULFOAMINO_SUGAR, core::chemical::C1_THIO_SUGAR, core::chemical::C2_THIO_SUGAR, core::chemical::C3_THIO_SUGAR,
  core::chemical::C4_THIO_SUGAR, core::chemical::C5_THIO_SUGAR, core::chemical::C6_THIO_SUGAR, core::chemical::C7_THIO_SUGAR,
  core::chemical::C8_THIO_SUGAR, core::chemical::C9_THIO_SUGAR, core::chemical::C1_METHYLATED_SUGAR, core::chemical::C2_METHYLATED_SUGAR,
  core::chemical::C3_METHYLATED_SUGAR, core::chemical::C4_METHYLATED_SUGAR, core::chemical::C5_METHYLATED_SUGAR, core::chemical::C6_METHYLATED_SUGAR,
  core::chemical::C7_METHYLATED_SUGAR, core::chemical::C8_METHYLATED_SUGAR, core::chemical::C9_METHYLATED_SUGAR, core::chemical::C1_PHOSPHATE,
  core::chemical::C2_PHOSPHATE, core::chemical::C3_PHOSPHATE, core::chemical::C4_PHOSPHATE, core::chemical::C5_PHOSPHATE,
  core::chemical::C6_PHOSPHATE, core::chemical::C7_PHOSPHATE, core::chemical::C8_PHOSPHATE, core::chemical::C9_PHOSPHATE,
  core::chemical::O1_ACETYL_SUGAR, core::chemical::O2_ACETYL_SUGAR, core::chemical::O3_ACETYL_SUGAR, core::chemical::O4_ACETYL_SUGAR,
  core::chemical::O5_ACETYL_SUGAR, core::chemical::O6_ACETYL_SUGAR, core::chemical::O7_ACETYL_SUGAR, core::chemical::O8_ACETYL_SUGAR,
  core::chemical::O9_ACETYL_SUGAR, core::chemical::O1_LACTYL_SUGAR, core::chemical::O2_LACTYL_SUGAR, core::chemical::O3_LACTYL_SUGAR,
  core::chemical::O4_LACTYL_SUGAR, core::chemical::O5_LACTYL_SUGAR, core::chemical::O6_LACTYL_SUGAR, core::chemical::O7_LACTYL_SUGAR,
  core::chemical::O8_LACTYL_SUGAR, core::chemical::O9_LACTYL_SUGAR, core::chemical::C1_FLUORO_SUGAR, core::chemical::C2_FLUORO_SUGAR,
  core::chemical::C3_FLUORO_SUGAR, core::chemical::C4_FLUORO_SUGAR, core::chemical::C5_FLUORO_SUGAR, core::chemical::C6_FLUORO_SUGAR,
  core::chemical::C7_FLUORO_SUGAR, core::chemical::C8_FLUORO_SUGAR, core::chemical::C9_FLUORO_SUGAR, core::chemical::METHYL_GLYCOSIDE,
  core::chemical::TRIAZOLAMERN, core::chemical::TRIAZOLAMERC, core::chemical::CA2_COORDINATION, core::chemical::MG2_COORDINATION,
  core::chemical::CU2_COORDINATION, core::chemical::CO2_COORDINATION, core::chemical::FE2_COORDINATION, core::chemical::FE3_COORDINATION,
  core::chemical::MN2_COORDINATION, core::chemical::LA3_COORDINATION, core::chemical::LU3_COORDINATION, core::chemical::TB3_COORDINATION,
  core::chemical::TM3_COORDINATION, core::chemical::DY3_COORDINATION, core::chemical::YB3_COORDINATION, core::chemical::ADDUCT_VARIANT,
  core::chemical::CENTROID_WITH_HA, core::chemical::SPECIAL_ROT, core::chemical::SC_FRAGMENT, core::chemical::SHOVE_BB,
  core::chemical::N_VARIANTS = SHOVE_BB
}
 Enumerators for all the ResidueType variants. More...
 

Detailed Description

Enumeration definition for VariantType.

Author
Labonte JWLab.nosp@m.onte.nosp@m.@jhu..nosp@m.edu
Vikram K. Mulligan (vmull.nosp@m.ig@u.nosp@m.w.edu) – updated for multi-threading
Note
DO NOT EDIT THIS FILE DIRECTLY! It is auto-generated. If you wish to edit it, modify the update_ResidueType_enum_files.py script.