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protocols::match::SecondaryStructureMPM Class Reference

removes positions at which the pose does not have the desired secondary structure More...

#include <MatchPositionModifiers.hh>

Inheritance diagram for protocols::match::SecondaryStructureMPM:
Inheritance graph
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Public Member Functions

 SecondaryStructureMPM (utility::vector1< std::string > const &input_tokens)
 
 ~SecondaryStructureMPM () override
 
utility::vector1< core::Sizemodified_match_positions (utility::vector1< core::Size > const &original_positions, core::pose::Pose const &match_pose, protocols::match::MatcherTaskCOP mtask) const override
 the positions in the vector1< core::Size > that is returned by this function will replace the match positions in the MatcherTask. More...
 
- Public Member Functions inherited from protocols::match::MatchPositionModifier
 MatchPositionModifier ()
 
 ~MatchPositionModifier () override
 

Private Attributes

std::set< char > desired_ss_chars_
 
utility::vector1< std::string > ss_motifs_
 

Detailed Description

removes positions at which the pose does not have the desired secondary structure

Constructor & Destructor Documentation

protocols::match::SecondaryStructureMPM::SecondaryStructureMPM ( utility::vector1< std::string > const &  input_tokens)
protocols::match::SecondaryStructureMPM::~SecondaryStructureMPM ( )
overridedefault

Member Function Documentation

utility::vector1< core::Size > protocols::match::SecondaryStructureMPM::modified_match_positions ( utility::vector1< core::Size > const &  original_positions,
core::pose::Pose const &  match_pose,
protocols::match::MatcherTaskCOP  mtask 
) const
overridevirtual

the positions in the vector1< core::Size > that is returned by this function will replace the match positions in the MatcherTask.

Implements protocols::match::MatchPositionModifier.

References desired_ss_chars_, core::scoring::dssp::Dssp::get_dssp_secstruct(), core::pose::Pose::size(), ss_motifs_, core::id::to_string(), and protocols::match::tr().

Member Data Documentation

std::set< char > protocols::match::SecondaryStructureMPM::desired_ss_chars_
private
utility::vector1< std::string > protocols::match::SecondaryStructureMPM::ss_motifs_
private

The documentation for this class was generated from the following files: