Rosetta  2018.48
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protocols::moves::Mover Class Referenceabstract

#include <Mover.hh>

Inherits ReferenceCount, and enable_shared_from_this< Mover >.

Inherited by protocols::aa_composition::AddCompositionConstraintMover, protocols::aa_composition::AddHelixSequenceConstraintsMover, protocols::aa_composition::AddMHCEpitopeConstraintMover, protocols::aa_composition::AddNetChargeConstraintMover, protocols::aa_composition::ClearCompositionConstraintsMover, protocols::abinitio::AbrelaxMover, protocols::abinitio::abscript::AbscriptStageMover, protocols::abinitio::DomainAssembly, protocols::abinitio::FragmentSampler, protocols::abinitio::Protocol, protocols::abinitio::ResolutionSwitcher, protocols::analysis::GlycanInfoMover, protocols::analysis::InterfaceAnalyzerMover, protocols::analysis::LoopAnalyzerMover, protocols::analysis::PackStatMover, protocols::analysis::simple_metrics::RunSimpleMetricsMover, protocols::anchored_design::AnchoredDesignMover, protocols::anchored_design::AnchoredPerturbMover, protocols::anchored_design::AnchoredRefineMover, protocols::antibody::AntibodyCDRGrafter, protocols::antibody::AntibodyModelerProtocol, protocols::antibody::AntibodyNumberingConverterMover, protocols::antibody::CDRsMinPackMin, protocols::antibody::CloseOneCDRLoop, protocols::antibody::constraints::CDRDihedralConstraintMover, protocols::antibody::constraints::ParatopeEpitopeSiteConstraintMover, protocols::antibody::constraints::ParatopeSiteConstraintMover, protocols::antibody::design::AntibodyDesignMover, protocols::antibody::design::AntibodyDesignProtocol, protocols::antibody::design::MutateFrameworkForCluster, protocols::antibody::GraftCDRLoopsProtocol, protocols::antibody::GraftedStemOptimizer, protocols::antibody::GraftOneCDRLoop, protocols::antibody::H3CterInsert, protocols::antibody::H3PerturbCCD, protocols::antibody::H3RefineCCD, protocols::antibody::LHRepulsiveRamp, protocols::antibody::LHRepulsiveRampLegacy, protocols::antibody::LHSnugFitLegacy, protocols::antibody::ModelCDRH3, protocols::antibody::RefineBetaBarrel, protocols::antibody::RefineOneCDRLoop, protocols::antibody::RefineOneCDRLoopCentroid, protocols::antibody::snugdock::SnugDockProtocol, protocols::antibody_legacy::AntibodyModeler, protocols::antibody_legacy::CDRH3Modeler, protocols::antibody_legacy::CloseOneMover, protocols::antibody_legacy::GraftMover, protocols::antibody_legacy::GraftOneMover, protocols::antibody_legacy::LoopRlxMover, protocols::backbone_moves::local_backbone_mover::LocalBackboneMover, protocols::backrub::BackrubProtocol, protocols::calc_taskop_movers::ConsensusDesignMover, protocols::calc_taskop_movers::CreateSequenceMotifMover, protocols::calc_taskop_movers::DesignRepackMover, protocols::calc_taskop_movers::ForceDisulfidesMover, protocols::canonical_sampling::CanonicalSamplingMover, protocols::canonical_sampling::MetropolisHastingsMover, protocols::canonical_sampling::ThermodynamicMover, protocols::canonical_sampling::ThermodynamicObserver, protocols::carbohydrates::CreateGlycanSequonMover, protocols::carbohydrates::GlycanTreeMinMover, protocols::carbohydrates::GlycanTreeModeler, protocols::carbohydrates::GlycanTreeSampler, protocols::carbohydrates::IdealizeAnomericHydrogens, protocols::carbohydrates::LinkageConformerMover, protocols::carbohydrates::RingPlaneFlipMover, protocols::carbohydrates::SimpleGlycosylateMover, protocols::chemically_conjugated_docking::UBQ_GTPaseMover, protocols::cluster::GatherPosesMover, protocols::comparative_modeling::ExtraThreadingMover, protocols::comparative_modeling::LoopRelaxMover, protocols::comparative_modeling::LoopRelaxThreadingMover, protocols::comparative_modeling::MultiThreadingMover, protocols::comparative_modeling::PartialThreadingMover, protocols::comparative_modeling::RecoverSideChainsMover, protocols::comparative_modeling::StealLigandMover, protocols::comparative_modeling::StealSideChainsMover, protocols::comparative_modeling::ThreadingMover, protocols::constraint_generator::AddConstraints, protocols::constraint_generator::RemoveConstraints, protocols::constraint_movers::AddConstraintsToCurrentConformationMover, protocols::constraint_movers::ClearConstraintsMover, protocols::constraint_movers::ConstraintSetMover, protocols::constraint_movers::CstInfoMover, protocols::constraint_movers::ResidueTypeConstraintMover, protocols::contact_map::ContactMap, protocols::coupled_moves::CoupledMovesProtocol, protocols::cryst::CrystRMS, protocols::cryst::DockLatticeMover, protocols::cryst::FitBfactorsMover, protocols::cryst::LoadDensityMapMover, protocols::cryst::MakeLatticeMover, protocols::cryst::MakeLayerMover, protocols::cryst::RecomputeDensityMapMover, protocols::cryst::ReportGradientsMover, protocols::cryst::SetCrystWeightMover, protocols::cryst::SetRefinementOptionsMover, protocols::cryst::TagPoseWithRefinementStatsMover, protocols::cryst::UpdateCrystInfo, protocols::cryst::UpdateSolventMover, protocols::cutoutdomain::CutOutDomain, protocols::cyclic_peptide::CreateAngleConstraint, protocols::cyclic_peptide::CreateDistanceConstraint, protocols::cyclic_peptide::CreateTorsionConstraint, protocols::cyclic_peptide::CrosslinkerMover, protocols::cyclic_peptide::DeclareBond, protocols::cyclic_peptide::FlipChiralityMover, protocols::cyclic_peptide::PeptideCyclizeMover, protocols::cyclic_peptide::PeptideStubMover, protocols::cyclic_peptide::SymmetricCycpepAlign, protocols::cyclic_peptide::TryDisulfPermutations, protocols::ddg::ddGMover, protocols::denovo_design::movers::AddSegmentDataMover, protocols::denovo_design::movers::AlignResiduesMover, protocols::denovo_design::movers::BridgeChainsMover, protocols::denovo_design::movers::BuildDeNovoBackboneMover, protocols::denovo_design::movers::DeclareStructureDataCovalentBondMover, protocols::denovo_design::movers::ExtendChainMover, protocols::denovo_design::movers::FoldTreeFromFoldGraphMover, protocols::denovo_design::movers::MakeAsymmetricStructureDataMover, protocols::denovo_design::movers::RotateSegmentMover, protocols::denovo_design::movers::SealFoldTreeMover, protocols::denovo_design::movers::SetPoseSecstructFromStructureDataMover, protocols::denovo_design::movers::SetResidueAliasMover, protocols::design_opt::GreedyOptMutationMover, protocols::dna::SeparateDnaFromNonDna, protocols::docking::ConformerSwitchMover, protocols::docking::DockingHighRes, protocols::docking::DockingInitialPerturbation, protocols::docking::DockingLowRes, protocols::docking::DockingProtocol, protocols::docking::DockingSlideIntoContact, protocols::docking::DockMCMCycle, protocols::docking::DockSetupMover, protocols::docking::EllipsoidalRandomizationMover, protocols::docking::FaDockingSlideIntoContact, protocols::docking::membrane::MPDockingMover, protocols::docking::membrane::MPDockingSetupMover, protocols::docking::membrane::MPFindInterfaceMover, protocols::docking::membrane::QuickRelaxPartnersSeparately, protocols::docking::SlideIntoContact, protocols::docking::TemperedDocking, protocols::domain_assembly::AddAssemblyConstraints, protocols::domain_assembly::AssembleLinkerMover, protocols::domain_assembly::CombineChainsMover, protocols::domain_assembly::PostDockAssemblyScorer, protocols::electron_density::BfactorFittingMover, protocols::electron_density::DockIntoDensityMover, protocols::electron_density::ReportFSC, protocols::electron_density::ScaleMapIntensities, protocols::electron_density::SetupForDensityScoringMover, protocols::electron_density::VoxelSpacingRefinementMover, protocols::environment::ClientMover, protocols::environment::EnvMover, protocols::enzdes::AddOrRemoveMatchCsts, protocols::enzdes::EnzRepackMinimize, protocols::enzdes::ModifyStoredRBConfs, protocols::enzdes::PackRotamersMoverPartGreedy, protocols::enzdes::RepackLigandSiteWithoutLigandMover, protocols::enzdes::UpdateEnzdesHeaderMover, protocols::enzymatic_movers::EnzymaticMover, protocols::evolution::NucleotideMutation, protocols::farnesyl::InstallFarnesylMover, protocols::farnesyl::SampleFarnesylMover, protocols::features::InterfaceDdGMover, protocols::features::ReportToDB, protocols::fibril::SetupForFibrilMover, protocols::fldsgn::BluePrintBDR, protocols::fldsgn::CircularPermutation, protocols::fldsgn::MatchResiduesMover, protocols::fldsgn::potentials::SetAACompositionPotential, protocols::fldsgn::potentials::SetSecStructEnergies, protocols::flexpack::FlexPacker, protocols::flexpep_docking::FlexPepDockingAbInitio, protocols::flexpep_docking::FlexPepDockingLowRes, protocols::flexpep_docking::FlexPepDockingProtocol, protocols::floppy_tail::FloppyTailMover, protocols::flxbb::FlxbbDesign, protocols::flxbb::InterlockAroma, protocols::fold_from_loops::movers::AlignByResidueSelectorMover, protocols::fold_from_loops::movers::DisplayPoseLabelsMover, protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMover, protocols::fold_from_loops::movers::MoveMapFactoryToNamedMoveMapMover, protocols::fold_from_loops::movers::NubInitioLoopClosureMover, protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMover, protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMover, protocols::fold_from_loops::movers::SavePDBInfoMover, protocols::fold_from_loops::movers::SplitAndMixPoseMover, protocols::fold_from_loops::NubInitioMover, protocols::forge::components::BDR, protocols::forge::components::VarLengthBuild, protocols::forge::constraints::RemoveRemodelCsts, protocols::forge::remodel::RemodelAccumulator, protocols::forge::remodel::RemodelConstraintGenerator, protocols::forge::remodel::RemodelDesignMover, protocols::forge::remodel::RemodelGlobalFrame, protocols::forge::remodel::RemodelLigandHandler, protocols::forge::remodel::RemodelLoopMover, protocols::forge::remodel::RemodelMover, protocols::frag_picker::nonlocal::NonlocalFrags, protocols::frags::TorsionFragmentMover, protocols::generalized_kinematic_closure::GeneralizedKIC, protocols::grafting::GraftMoverBase, protocols::grafting::simple_movers::DeleteRegionMover, protocols::grafting::simple_movers::InsertPoseIntoPoseMover, protocols::grafting::simple_movers::KeepRegionMover, protocols::grafting::simple_movers::ReplaceRegionMover, protocols::hbnet::HBNet, protocols::helical_bundle::BackboneGridSampler, protocols::helical_bundle::BundleGridSampler, protocols::helical_bundle::FitSimpleHelix, protocols::helical_bundle::MakeBundle, protocols::helical_bundle::MakeBundleHelix, protocols::helical_bundle::PerturbBundle, protocols::helical_bundle::PerturbBundleHelix, protocols::hotspot_hashing::movers::PlaceProbeMover [virtual], protocols::hybridization::BackboneTorsionPerturbation, protocols::hybridization::BackboneTorsionSampler, protocols::hybridization::CartesianHybridize, protocols::hybridization::CartesianSampler, protocols::hybridization::ChunkTrialMover, protocols::hybridization::DomainAssembly, protocols::hybridization::FoldTreeHybridize, protocols::hybridization::HybridizeProtocol, protocols::hybridization::InsertChunkMover, protocols::hybridization::MRMover, protocols::hybridization::WeightedFragmentSmoothTrialMover, protocols::hybridization::WeightedFragmentTrialMover, protocols::hydrate::Hydrate, protocols::idealize::IdealizeMover, protocols::indel::IndelOptimizationMover, protocols::indexed_structure_store::movers::DirectSegmentLookupMover, protocols::indexed_structure_store::movers::SegmentSequenceProfileMover, protocols::legacy_sewing::LegacyAddStartnodeFragments, protocols::legacy_sewing::LegacyAssemblyConstraintsMover, protocols::legacy_sewing::LegacyAssemblyMover, protocols::ligand_docking::AddHydrogen, protocols::ligand_docking::AddHydrogens, protocols::ligand_docking::CompoundTranslate, protocols::ligand_docking::ComputeLigandRDF, protocols::ligand_docking::FinalMinimizer, protocols::ligand_docking::ga_ligand_dock::GALigandDock, protocols::ligand_docking::GrowLigand, protocols::ligand_docking::HighResDocker, protocols::ligand_docking::HighResEnsemble, protocols::ligand_docking::InterfaceScoreCalculator, protocols::ligand_docking::LigandBaseProtocol [virtual], protocols::ligand_docking::LigandDesign, protocols::ligand_docking::MinimizeBackbone, protocols::ligand_docking::MinimizeLigand, protocols::ligand_docking::ProtLigEnsemble, protocols::ligand_docking::RandomConformerMover, protocols::ligand_docking::RandomConformers, protocols::ligand_docking::RigidSearchMover, protocols::ligand_docking::Rotate, protocols::ligand_docking::Rotates, protocols::ligand_docking::SlideTogether, protocols::ligand_docking::StartFrom, protocols::ligand_docking::TetherLigand, protocols::ligand_docking::Transform, protocols::ligand_docking::TransformEnsemble, protocols::ligand_docking::Translate, protocols::ligand_docking::UnconstrainedTorsionsMover, protocols::ligand_docking::WriteLigandMolFile, protocols::loop_build::LoopBuildMover, protocols::loop_build::LoopmodelWrapper, protocols::loop_grower::FragmentExtension, protocols::loop_grower::LoopGrower, protocols::loop_grower::SheetSampler, protocols::loop_modeling::LoopMover, protocols::loophash::FastGapMover, protocols::loophash::LoopHashDiversifier, protocols::loophash::LoopHashLibrary, protocols::loophash::LoopHashMoverWrapper, protocols::loophash::LoopHashRelaxProtocol, protocols::loophash::Mover_LoopHashRefine, protocols::LoopRebuild, protocols::LoopRefine, protocols::loops::FoldTreeFromLoops, protocols::loops::loop_closure::ccd::CCDLoopClosureMover, protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure, protocols::loops::loop_closure::kinematic_closure::KinematicMover, protocols::loops::loop_closure::kinematic_closure::KinematicWrapper, protocols::loops::loop_mover::LoopMover, protocols::loops::loop_mover::refine::LoopRefineInnerCycle, protocols::magnesium::MgHydrater, protocols::magnesium::MgMonteCarlo, protocols::magnesium::MgOrbitalFrameFinder, protocols::magnesium::MgScanner, protocols::magnesium::MgWaterHydrogenPacker, protocols::make_rot_lib::MakeRotLibMover, protocols::matdes::ExtractSubposeMover, protocols::matdes::MatDesGreedyOptMutationMover, protocols::matdes::SchemePlaceMotifsMover, protocols::matdes::SymDofMover, protocols::md::MDBase, protocols::mean_field::GenMeanFieldMover, protocols::medal::MedalExchangeMover, protocols::medal::MedalMover, protocols::membrane::AddMembraneMover, protocols::membrane::AddMembraneSpanConstraint, protocols::membrane::AddMembraneSpanTermZConstraint, protocols::membrane::AddMPLigandMover, protocols::membrane::benchmark::MakeCanonicalHelix, protocols::membrane::benchmark::SampleTiltAngles, protocols::membrane::FlipMover, protocols::membrane::HelixFromSequence, protocols::membrane::MembranePositionFromTopologyMover, protocols::membrane::MPLipidAccessibility, protocols::membrane::MPMutateRelaxMover, protocols::membrane::MPQuickRelaxMover, protocols::membrane::OptimizeMembranePositionMover, protocols::membrane::OptimizeProteinEmbeddingMover, protocols::membrane::RandomPositionRotationMover, protocols::membrane::RandomPositionTranslationMover, protocols::membrane::RotationMover, protocols::membrane::SetMembraneCenterMover, protocols::membrane::SetMembraneNormalMover, protocols::membrane::SetMembranePositionMover, protocols::membrane::SpinAroundPartnerMover, protocols::membrane::TiltMover, protocols::membrane::TransformIntoMembraneMover, protocols::membrane::TranslationMover, protocols::membrane::TranslationRotationMover, protocols::membrane::visualize::VisualizeEmbeddingMover, protocols::membrane::visualize::VisualizeMembraneMover, protocols::metal_interface::ZincHeterodimerMover, protocols::minimization_packing::BoltzmannRotamerMover, protocols::minimization_packing::DisulfideOptimizationMover, protocols::minimization_packing::GreenPacker, protocols::minimization_packing::MinPackMover, protocols::minimization_packing::PackRotamersMover, protocols::minimization_packing::PertMinMover, protocols::minimization_packing::RepackSidechainsMover, protocols::minimization_packing::RotamerizeMover, protocols::minimization_packing::RotamerTrialsMinMover, protocols::minimization_packing::RotamerTrialsMover, protocols::minimization_packing::SaneMinMover, protocols::minimization_packing::TaskAwareMinMover, protocols::monte_carlo::MonteCarloRecover, protocols::monte_carlo::MonteCarloReset, protocols::monte_carlo::MonteCarloTest, protocols::monte_carlo::ResetBaselineMover, protocols::motif_grafting::movers::MotifGraftMover, protocols::motifs::MotifDnaPacker, protocols::moves::ChangeFoldTreeMover, protocols::moves::CompositionMover, protocols::moves::CyclicMover, protocols::moves::DsspMover, protocols::moves::FilterMover, protocols::moves::FilterReportAsPoseExtraScoresMover, protocols::moves::FilterReporterMover, protocols::moves::IfMover, protocols::moves::IteratedConvergenceMover, protocols::moves::JumpOutMover, protocols::moves::MCShowMover, protocols::moves::MonteCarloUtil, protocols::moves::MoveMapMover, protocols::moves::MoverApplyingMover, protocols::moves::MoverContainer, protocols::moves::MoverForPoseList, protocols::moves::PDBDumpMover, protocols::moves::ProfilerMover, protocols::moves::PyMOLMover, protocols::moves::RampingMover, protocols::moves::RepeatMover, protocols::moves::StructureRestrictor, protocols::moves::TrialMover, protocols::moves::VectorPoseMover, protocols::moves::WhileMover, protocols::mpi_refinement::StructAvrgMover, protocols::ncbb::NcbbDockDesignProtocol, protocols::ncbb::oop::OopCreatorMover, protocols::ncbb::oop::OopDockDesignProtocol, protocols::ncbb::SecStructFinder, protocols::ncbb::SecStructMinimizeMover, protocols::network::UIMover, protocols::noesy_assign::DistanceScoreMover, protocols::nonlocal::BiasedFragmentMover, protocols::nonlocal::HelixRotate, protocols::nonlocal::SheetTranslate, protocols::nonlocal::SingleFragmentMover, protocols::normalmode::NormalModeMinimizer, protocols::normalmode::NormalModeRelaxMover, protocols::pb_potential::SetupPoissonBoltzmannPotential, protocols::pose_creation::ExtendedPoseMover, protocols::pose_creation::MakeJunctionsMover, protocols::pose_creation::MakePolyXMover, protocols::pose_creation::MergePDBatOverlapMover, protocols::pose_creation::MergePDBMover, protocols::pose_length_moves::AnalyzeLoopModeling, protocols::pose_length_moves::ConnectChainsMover, protocols::pose_length_moves::FixAllLoopsMover, protocols::pose_length_moves::InsertResMover, protocols::pose_length_moves::NearNativeLoopCloser, protocols::protein_interface_design::movers::AddChainBreak, protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots, protocols::protein_interface_design::movers::BestHotspotCstMover, protocols::protein_interface_design::movers::DockAndRetrieveSidechains, protocols::protein_interface_design::movers::DockWithHotspotMover, protocols::protein_interface_design::movers::FavorNativeResiduePreCycle, protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle, protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover, protocols::protein_interface_design::movers::HotspotHasherMover, protocols::protein_interface_design::movers::InterfaceRecapitulationMover, protocols::protein_interface_design::movers::LoopLengthChange, protocols::protein_interface_design::movers::LoopOver, protocols::protein_interface_design::movers::MapHotspot, protocols::protein_interface_design::movers::PatchdockTransform, protocols::protein_interface_design::movers::PeptideStapleDesignMover, protocols::protein_interface_design::movers::RandomMutation, protocols::protein_interface_design::movers::SetAtomTree, protocols::protein_interface_design::movers::SetTemperatureFactor, protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover, protocols::protein_interface_design::movers::SetupHotspotConstraintsMover, protocols::protein_interface_design::movers::ShoveResidueMover, protocols::protein_interface_design::movers::SpinMover, protocols::protein_interface_design::movers::SubroutineMover, protocols::protein_interface_design::movers::TaskAwareCsts, protocols::protein_interface_design::movers::TryRotamers, protocols::protein_interface_design::movers::VLB, protocols::qsar::qsarMover, protocols::qsar::RenderGridsToKinemage, protocols::rbsegment_relax::AutoRBMover, protocols::rbsegment_relax::CCDMoveWrapper, protocols::rbsegment_relax::FragInsertAndAlignMover, protocols::rbsegment_relax::IdealizeHelicesMover, protocols::rbsegment_relax::MakeStarTopologyMover, protocols::rbsegment_relax::OptimizeThreadingMover, protocols::rbsegment_relax::RBSegmentMover, protocols::rbsegment_relax::RBSegmentRelax, protocols::RBSegmentRelaxImpl, protocols::recces::RECCES_Mover, protocols::recces::scratch::ThermalMinimizer, protocols::recces::scratch::ThermalSamplingMover, protocols::relax::AtomCoordinateCstMover, protocols::relax::LocalRelax, protocols::relax::membrane::MPFastRelaxMover, protocols::relax::membrane::MPRangeRelaxMover, protocols::relax::RangeRelaxMover, protocols::relax::RelaxProtocolBase, protocols::residue_selectors::StoreResidueSubsetMover, protocols::rigid::MembraneCenterPerturbationMover, protocols::rigid::MembraneNormalPerturbationMover, protocols::rigid::MovePoseToMembraneCenterMover, protocols::rigid::RigidBodyMotionMover, protocols::rigid::RollMover, protocols::rigid::RotateJumpAxisMover, protocols::rigid::WholeBodyRotationMover, protocols::rigid::WholeBodyTranslationMover, protocols::rna::denovo::coarse::CoarseRNA_LoopCloser, protocols::rna::denovo::coarse::MultipleDomainMover, protocols::rna::denovo::movers::RNA_DeNovoMasterMover, protocols::rna::denovo::movers::RNA_FragmentMover, protocols::rna::denovo::movers::RNA_HelixMover, protocols::rna::denovo::movers::RNA_Minimizer, protocols::rna::denovo::movers::RNA_Relaxer, protocols::rna::denovo::movers::RNP_HighResMover, protocols::rna::denovo::output::RNA_FragmentMonteCarloOutputter, protocols::rna::denovo::RNA_DeNovoProtocol, protocols::rna::denovo::RNA_FragmentMonteCarlo, protocols::rna::movers::ErraserMinimizerMover, protocols::rna::movers::RNA_DeNovoOptimizer, protocols::rna::movers::RNA_LoopCloser, protocols::rna::movers::RNAIdealizeMover, protocols::rna::movers::RNAThreadAndMinimizeMover, protocols::rna::setup::RNA_JobDistributor, protocols::rosetta_scripts::AdditionalOutputWrapper, protocols::rosetta_scripts::MultipleOutputWrapper, protocols::rosetta_scripts::MultiplePoseMover, protocols::rosetta_scripts::ParsedProtocol, protocols::rosetta_scripts::SavePoseMover, protocols::rotamer_recovery::RotamerRecoveryMover, protocols::RotamerDump::RotamerDumpMover, protocols::seeded_abinitio::CAcstGenerator, protocols::seeded_abinitio::CloseFold, protocols::seeded_abinitio::CoordinateCst, protocols::seeded_abinitio::DefineMovableLoops, protocols::seeded_abinitio::GrowPeptides, protocols::seeded_abinitio::SeedFoldTree, protocols::seeded_abinitio::SeedSetupMover, protocols::seeded_abinitio::SegmentHybridizer, protocols::seeded_abinitio::SwapSegment, protocols::sewing::hashing::AlignmentFileGeneratorMover, protocols::sewing::movers::AssemblyMover, protocols::simple_ddg::ddG, protocols::simple_moves::a3b_hbs::A3BHbsPatcher, protocols::simple_moves::AddCavitiesMover, protocols::simple_moves::AddChainMover, protocols::simple_moves::AddJobPairData, protocols::simple_moves::AddPDBInfoMover, protocols::simple_moves::AddResidueLabelMover, protocols::simple_moves::AlignChainMover, protocols::simple_moves::asym_fold_and_dock::AsymFoldandDockMoveRbJumpMover, protocols::simple_moves::asym_fold_and_dock::AsymFoldandDockRbTrialMover, protocols::simple_moves::BBDihedralSamplerMover, protocols::simple_moves::bin_transitions::InitializeByBins, protocols::simple_moves::bin_transitions::PerturbByBins, protocols::simple_moves::ChainSplitMover, protocols::simple_moves::chiral::ChiralMover, protocols::simple_moves::CombinePoseMover, protocols::simple_moves::ConstrainToIdealMover, protocols::simple_moves::ContingentAcceptMover, protocols::simple_moves::ConvertRealToVirtualMover, protocols::simple_moves::ConvertVirtualToRealMover, protocols::simple_moves::CopyDofMover, protocols::simple_moves::CopyRotamerMover, protocols::simple_moves::CoupledMover, protocols::simple_moves::CutChainMover, protocols::simple_moves::CyclizationMover, protocols::simple_moves::DeleteChainMover, protocols::simple_moves::DeleteChainsMover, protocols::simple_moves::DisulfideInsertionMover, protocols::simple_moves::DME_FilterMover, protocols::simple_moves::DumpPdb, protocols::simple_moves::DumpSingleResidueRotamers, protocols::simple_moves::FavorSequenceProfile, protocols::simple_moves::FavorSymmetricSequence, protocols::simple_moves::hbs::HbsPatcher, protocols::simple_moves::LoadPDBMover, protocols::simple_moves::LoadUnboundRotMover, protocols::simple_moves::MembraneTopology, protocols::simple_moves::MissingDensityToJumpMover, protocols::simple_moves::ModifyVariantTypeMover, protocols::simple_moves::MutateResidue, protocols::simple_moves::oop::OopMover, protocols::simple_moves::oop::OopPatcher, protocols::simple_moves::oop::OopRandomPuckMover, protocols::simple_moves::oop::OopRandomSmallMover, protocols::simple_moves::PDBReloadMover, protocols::simple_moves::PeptideStapleMover, protocols::simple_moves::PeriodicBoxMover, protocols::simple_moves::PoseFromPoseResourceMover, protocols::simple_moves::ProlineFixMover, protocols::simple_moves::PSSM2BfactorMover, protocols::simple_moves::RandomOmegaFlipMover, protocols::simple_moves::RandomTorsionMover, protocols::simple_moves::rational_mc::RationalMonteCarlo, protocols::simple_moves::RepeatPropagationMover, protocols::simple_moves::ReportEffectivePKA, protocols::simple_moves::ReportXYZ, protocols::simple_moves::RepulsiveOnlyMover, protocols::simple_moves::ResetFoldTree, protocols::simple_moves::ReturnSidechainMover, protocols::simple_moves::RingConformationMover, protocols::simple_moves::SaveSequenceToCommentsMover, protocols::simple_moves::ScoreMover, protocols::simple_moves::SequenceProfileMover, protocols::simple_moves::SetTorsion, protocols::simple_moves::SetupMetalsMover, protocols::simple_moves::ShakeStructureMover, protocols::simple_moves::ShortBackrubMover, protocols::simple_moves::sidechain_moves::SetChiMover, protocols::simple_moves::SimpleThreadingMover, protocols::simple_moves::StorePoseSnapshot, protocols::simple_moves::StructProfileMover, protocols::simple_moves::SuperimposeMover, protocols::simple_moves::SwitchChainOrderMover, protocols::simple_moves::SwitchResidueTypeSetMover, protocols::simple_moves::TorsionDOFMover, protocols::simple_moves::TorsionSetMover, protocols::simple_moves::triazolamer::TriazolamerMover, protocols::simple_moves::triazolamer::TriazolamerRandomSmallMover, protocols::simple_moves::Tumble, protocols::simple_moves::UniformRotationMover, protocols::simple_moves::UniformTranslationMover, protocols::simple_moves::VirtualRootMover, protocols::simple_moves::WaterBoxMover, protocols::simple_moves::WriteFiltersToPose, protocols::simple_moves::WriteSSEMover, protocols::splice::AlignEndsMover, protocols::splice::RBInMover, protocols::splice::RBOutMover, protocols::splice::RotLibOut, protocols::splice::Splice, protocols::splice::SpliceOut [virtual], protocols::splice::TailSegmentMover, protocols::star::StarAbinitio, protocols::stepwise::legacy::modeler::protein::StepWiseProteinMinimizer, protocols::stepwise::legacy::modeler::protein::StepWiseProteinPoseSetup, protocols::stepwise::legacy::modeler::rna::RNA_AnalyticLoopCloser, protocols::stepwise::legacy::modeler::rna::StepWiseRNA_PoseSetup, protocols::stepwise::modeler::packer::SideChainCopier, protocols::stepwise::modeler::packer::StepWisePacker, protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker, protocols::stepwise::modeler::precomputed::PrecomputedLibraryMover, protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_Closer, protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser, protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger, protocols::stepwise::modeler::protein::StepWiseProteinBackboneSampler, protocols::stepwise::modeler::rna::bulge::BulgeApplyMover, protocols::stepwise::modeler::rna::bulge::BulgeUnApplyMover, protocols::stepwise::modeler::rna::checker::RNA_ChainClosureChecker, protocols::stepwise::modeler::rna::o2prime::O2PrimePacker, protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler, protocols::stepwise::modeler::rna::phosphate::PhosphateMover, protocols::stepwise::modeler::rna::sugar::SugarInstantiateMover, protocols::stepwise::modeler::rna::sugar::SugarVirtualizeMover, protocols::stepwise::modeler::rna::sugar::VirtualSugarJustInTimeInstantiator, protocols::stepwise::modeler::rna::sugar::VirtualSugarSamplerFromStringList, protocols::stepwise::modeler::StepWiseMinimizer, protocols::stepwise::modeler::StepWiseModeler, protocols::stepwise::monte_carlo::mover::AddMover, protocols::stepwise::monte_carlo::mover::AddOrDeleteMover, protocols::stepwise::monte_carlo::mover::DeleteMover, protocols::stepwise::monte_carlo::mover::FromScratchMover, protocols::stepwise::monte_carlo::mover::ResampleMover, protocols::stepwise::monte_carlo::mover::StepWiseMasterMover, protocols::stepwise::monte_carlo::mover::VaryLoopLengthMover, protocols::stepwise::monte_carlo::rna::RNA_AddDeleteMonteCarlo, protocols::stepwise::monte_carlo::rna::RNA_O2PrimeMover, protocols::stepwise::monte_carlo::rna::RNA_TorsionMover, protocols::stepwise::monte_carlo::StepWiseMonteCarlo, protocols::struct_fragment::StructFragmentMover, protocols::surface_docking::CentroidRelaxMover, protocols::surface_docking::FullatomRelaxMover, protocols::surface_docking::SurfaceDockingProtocol, protocols::surface_docking::SurfaceOrientMover, protocols::symmetric_docking::membrane::MPSymDockMover, protocols::symmetric_docking::SymDockBaseProtocol, protocols::symmetric_docking::SymDockingHiRes, protocols::symmetric_docking::SymDockingLowRes, protocols::symmetric_docking::SymDockProtocol, protocols::symmetric_docking::SymFoldandDockMoveRbJumpMover, protocols::symmetric_docking::SymFoldandDockRbTrialMover, protocols::symmetric_docking::SymFoldandDockSlideTrialMover, protocols::symmetric_docking::SymSidechainMinMover, protocols::symmetry::DetectSymmetry, protocols::symmetry::ExtractAsymmetricPoseMover, protocols::symmetry::ExtractAsymmetricUnitMover, protocols::symmetry::FaSymDockingSlideTogether, protocols::symmetry::SetupForSymmetryMover, protocols::symmetry::SetupNCSMover, protocols::symmetry::SymDockingInitialPerturbation, protocols::symmetry::SymDockingSlideIntoContact, protocols::symmetry::SymmetricRMSMover, protocols::task_operations::StoreCombinedStoredTasksMover, protocols::task_operations::StoreCompoundTaskMover, protocols::task_operations::StoreTaskMover, protocols::toolbox::match_enzdes_util::AlignPoseToInvrotTreeMover, protocols::toolbox::SamplerPlusPlus, protocols::ub_e2c::ubi_e2c_modeler, protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMover, and protocols::vardist_solaccess::LoadVarSolDistSasaCalculatorMover.

Public Types

typedef utility::tag::TagCOP TagCOP
 
typedef core::pose::Pose Pose
 
typedef core::pose::PoseCOP PoseCOP
 
typedef
protocols::filters::Filters_map 
Filters_map
 
typedef std::list< std::string > Strings
 

Public Member Functions

 Mover ()
 
 ~Mover () override
 
virtual MoverOP create ()
 
MoverCOP get_self_ptr () const
 
MoverOP get_self_ptr ()
 
MoverCAP get_self_weak_ptr () const
 
MoverAP get_self_weak_ptr ()
 
 Mover (std::string const &type_name)
 sets the type for a mover; name_ has been removed (2010/05/14) More...
 
 Mover (Mover const &other)
 
Moveroperator= (Mover const &other)
 assignment operator More...
 
virtual core::Real last_proposal_density_ratio ()
 
virtual void apply (Pose &)=0
 
std::string const & type () const
 
void set_type (std::string const &setting)
 
std::string get_current_tag () const
 A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More...
 
virtual void set_current_tag (std::string const &new_tag)
 
virtual void set_input_pose (PoseCOP pose)
 setter for poses contained for rms More...
 
virtual void set_native_pose (PoseCOP pose)
 setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More...
 
PoseCOP get_input_pose () const
 
PoseCOP get_native_pose () const
 
virtual void test_move (Pose &pose)
 : Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More...
 
void type (const std::string &type_in)
 
virtual MoverOP clone () const
 Return a clone of the Mover object. More...
 
virtual void parse_my_tag (TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)
 Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing. More...
 
virtual std::string get_name () const =0
 Each derived class must specify its name. The class name. More...
 
std::string get_type () const
 
MoverStatus get_last_move_status () const
 end parser interface, start Job Distributor interface///////////// More...
 
void reset_status ()
 resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More...
 
virtual core::pose::PoseOP get_additional_output ()
 Mechanism by which a mover may return multiple output poses from a single input pose. More...
 
virtual void clear_info ()
 Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More...
 
virtual Stringsinfo ()
 non-const accessor More...
 
virtual Strings const & info () const
 const accessor More...
 
virtual bool reinitialize_for_each_job () const
 Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More...
 
virtual bool reinitialize_for_new_input () const
 Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More...
 
virtual MoverOP fresh_instance () const
 Generates a new Mover object freshly created with the default ctor. More...
 
void set_current_job (protocols::jobdist::BasicJobCOP job)
 
jobdist::BasicJobCOP get_current_job () const
 
virtual void show (std::ostream &output=std::cout) const
 Outputs details about the Mover, including current settings. More...
 

Static Public Member Functions

static std::string name ()
 
static void register_options ()
 Overload this static method if you access options within the mover. More...
 

Protected Member Functions

void set_last_move_status (MoverStatus status)
 nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More...
 

Private Attributes

std::string type_
 
std::string current_tag_
 
PoseCOP input_pose_
 
PoseCOP native_pose_
 
MoverStatus last_status_
 used to track if movers fail their filters - jobdist::BasicJob Distributor queries for this value More...
 
Strings info_
 miscellaneous info: optional notes about mover results. Fed to Job by JobDistributor (jd2), allowing JobOutputters to optionally report this information in some way. More...
 
jobdist::BasicJobCOP current_job_
 this field can be NULL or it refers to the current JOB this mover is working on. More...
 

Member Typedef Documentation

typedef std::list< std::string > protocols::moves::Mover::Strings
typedef utility::tag::TagCOP protocols::moves::Mover::TagCOP

Constructor & Destructor Documentation

protocols::moves::Mover::Mover ( )
protocols::moves::Mover::~Mover ( )
overridedefault
protocols::moves::Mover::Mover ( std::string const &  type_name)

sets the type for a mover; name_ has been removed (2010/05/14)

protocols::moves::Mover::Mover ( Mover const &  other)

Member Function Documentation

virtual void protocols::moves::Mover::apply ( Pose )
pure virtual

Implemented in protocols::rigid::RigidBodyDofSeqPerturbMover, protocols::rigid::RigidBodyDofPerturbMover, protocols::rigid::RigidBodyDofRandomTransMover, protocols::rigid::RigidBodyDofSeqTransMover, protocols::rigid::RigidBodyDofTransMover, protocols::abinitio::Stage1Sampler, protocols::rigid::RigidBodyDofSeqRandomizeMover, protocols::rigid::RigidBodyDofRandomizeMover, protocols::rigid::UniformSphereTransMover, protocols::frags::TorsionFragmentMover, protocols::rigid::RigidBodyTransMover, protocols::loop_grower::LoopGrower, protocols::forge::components::VarLengthBuild, protocols::rigid::RigidBodyTiltMover, protocols::rbsegment_relax::StrandTwistingMover, protocols::rigid::RigidBodyDeterministicSpinMover, protocols::hbnet::HBNet, protocols::forge::remodel::RemodelLoopMover, protocols::rigid::RigidBodySpinMover, protocols::rbsegment_relax::GaussianRBSegmentMover, protocols::denovo_design::movers::SetPoseSecstructFromStructureDataMover, protocols::membrane::TranslationRotationMover, protocols::forge::remodel::RemodelMover, protocols::cryst::MakeLatticeMover, protocols::flxbb::FlxbbDesignPack, protocols::cluster::AssignToClustersMover, protocols::rigid::RigidBodyRandomizeMover, protocols::forge::components::BDR, protocols::moves::PyMOLMover, protocols::docking::SlideIntoContact, protocols::cryst::SetRefinementOptionsMover, protocols::enzdes::UpdateEnzdesHeaderMover, protocols::rbsegment_relax::SequenceShiftMover, protocols::rigid::RigidBodyPerturbNoCenterMover, protocols::anchored_design::AnchoredRefineMover, protocols::LoopRefine, protocols::moves::SwitchMover, protocols::docking::FaDockingSlideIntoContact, protocols::cryst::TagPoseWithRefinementStatsMover, protocols::analysis::InterfaceAnalyzerMover, protocols::moves::CycleMover, protocols::membrane::RotationMover, protocols::fldsgn::BluePrintBDR, protocols::enzdes::RepackLigandSiteWithoutLigandMover, protocols::membrane::SetMembraneCenterMover, protocols::cryst::UpdateSolventMover, protocols::antibody_legacy::LoopRlxMover, protocols::minimization_packing::GreenPacker, protocols::electron_density::DockIntoDensityMover, protocols::rigid::RigidBodyPerturbRandomJumpMover, protocols::features::ReportToDB, protocols::rbsegment_relax::HelicalGaussianMover, protocols::abinitio::JumpingFoldConstraintsWrapper, protocols::cryst::DockLatticeMover, protocols::enzdes::DiversifyStoredRBConfs, protocols::symmetry::ExtractAsymmetricPoseMover, protocols::docking::DockingSlideIntoContact, protocols::motif_grafting::movers::MotifGraftMover, protocols::anchored_design::AnchoredPerturbMover, protocols::cryst::FitBfactorsMover, protocols::moves::RandomMover, protocols::canonical_sampling::MetricRecorder, protocols::minimization_packing::EnergyCutRotamerTrialsMinMover, protocols::minimization_packing::EnergyCutRotamerTrialsMover, protocols::rigid::RigidBodyPerturbMover, protocols::moves::RampingMover, protocols::antibody_legacy::CloseOneMover, protocols::docking::DockingProtocol, protocols::enzdes::MinimizeStoredRBConfs, protocols::simple_moves::WaterBoxMover, protocols::canonical_sampling::TrajectoryRecorder, protocols::symmetric_docking::SymDockProtocol, protocols::abinitio::ClassicAbinitio, protocols::membrane::SetMembraneNormalMover, protocols::moves::SequenceMover, protocols::simple_moves::ClassicFragmentMover, protocols::cryst::LoadDensityMapMover, protocols::abinitio::MembraneAbinitio, protocols::hybridization::FoldTreeHybridize, protocols::moves::TrialMover, protocols::enzdes::PredesignPerturbMover, protocols::enzdes::ApplyRandomStoredRBConf, protocols::relax::FastRelax, protocols::abinitio::FragmentSampler, protocols::fldsgn::potentials::SetSecStructEnergies, protocols::cryst::MakeLayerMover, protocols::symmetry::ExtractAsymmetricUnitMover, protocols::flxbb::FlxbbDesign, protocols::legacy_sewing::LegacyAssemblyConstraintsMover, protocols::monte_carlo::GenericMonteCarloMover, protocols::fldsgn::CircularPermutation, protocols::membrane::RandomPositionTranslationMover, protocols::simple_moves::UniformTranslationMover, protocols::membrane::AddMembraneMover, protocols::antibody_legacy::GraftOneMover, protocols::docking::membrane::MPDockingMover, protocols::membrane::TranslationMover, protocols::loops::loop_closure::kinematic_closure::KinematicMover, protocols::cryst::RecomputeDensityMapMover, protocols::loop_modeling::LoopMover, protocols::membrane::SpinAroundPartnerMover, protocols::membrane::TransformIntoMembraneMover, protocols::minimization_packing::MinMover, protocols::pose_length_moves::NearNativeLoopCloser, protocols::enzdes::GenerateStoredRBConfs, protocols::cryst::CrystRMS, protocols::hybridization::HybridizeProtocol, protocols::membrane::TiltMover, protocols::membrane::FlipMover, protocols::rna::movers::RNAThreadAndMinimizeMover, protocols::antibody::design::AntibodyDesignProtocol, protocols::symmetry::FaSymDockingSlideTogether, protocols::abinitio::ConstraintFragmentSampler, protocols::fold_from_loops::movers::SplitAndMixPoseMover, protocols::comparative_modeling::ThreadingMover, protocols::docking::membrane::MPDockingSetupMover, protocols::loop_grower::SheetSampler, protocols::idealize::IdealizeMover, protocols::loops::loop_closure::ccd::CCDLoopClosureMover, protocols::carbohydrates::GlycanTreeModeler, protocols::docking::DockingHighRes, protocols::protein_interface_design::movers::PlaceStubMover, protocols::simple_moves::sidechain_moves::SidechainMoverBase, protocols::abinitio::FoldConstraints, protocols::antibody::design::AntibodyDesignMover, protocols::ligand_docking::ProtLigEnsemble, protocols::membrane::visualize::VisualizeMembraneMover, protocols::ddg::ddGMover, protocols::fldsgn::potentials::SetAACompositionPotential, protocols::minimization_packing::PackRotamersMover, protocols::denovo_design::movers::FastDesign, protocols::helical_bundle::MakeBundleHelix, protocols::membrane::MPQuickRelaxMover, protocols::relax::RangeRelaxMover, protocols::grafting::AnchoredGraftMover, protocols::symmetric_docking::membrane::MPSymDockMover, protocols::forge::remodel::RemodelDesignMover, protocols::membrane::AddMPLigandMover, protocols::simple_moves::sidechain_moves::SidechainMover, protocols::symmetry::SetupNCSMover, protocols::comparative_modeling::LoopRelaxMover, protocols::ligand_docking::HighResEnsemble, protocols::docking::TemperedDocking, protocols::membrane::OptimizeMembranePositionMover, protocols::moves::MCShowMover, protocols::abinitio::Protocol, protocols::docking::DockingHighResLegacy, protocols::docking::InterfaceSidechainMinMover, protocols::evolution::EvolutionaryDynamicsMover, protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure, protocols::relax::membrane::MPRangeRelaxMover, protocols::simple_moves::ChangeAndResetFoldTreeMover, protocols::backrub::BackrubSidechainMover, protocols::docking::DockingLowRes, protocols::ligand_docking::LigandBaseProtocol, protocols::ncbb::oop::OopCreatorMover, protocols::antibody_legacy::CDRH3Modeler, protocols::docking::membrane::MPFindInterfaceMover, protocols::relax::CentroidRelax, protocols::relax::membrane::MPFastRelaxMover, protocols::monte_carlo::GenericSimulatedAnnealer, protocols::calc_taskop_movers::CreateSequenceMotifMover, protocols::carbohydrates::RingPlaneFlipMover, protocols::docking::DockMCMCycle, protocols::nonlocal::SingleFragmentMover, protocols::symmetric_docking::SymInterfaceSidechainMinMover, protocols::antibody::design::MutateFrameworkForCluster, protocols::rigid::WholeBodyRotationMover, protocols::simple_moves::PeriodicBoxMover, protocols::symmetric_docking::SymDockingHiRes, protocols::docking::membrane::QuickRelaxPartnersSeparately, protocols::backrub::BackrubMover, protocols::comparative_modeling::MultiThreadingMover, protocols::electron_density::BfactorFittingMover, protocols::grafting::CCDEndsGraftMover, protocols::rigid::RigidBodyMover, protocols::carbohydrates::CreateGlycanSequonMover, protocols::forge::remodel::RemodelGlobalFrame, protocols::ligand_docking::LigandDockMain, protocols::membrane::MembranePositionFromTopologyMover, protocols::relax::ClassicRelax, protocols::sewing::hashing::AlignmentFileGeneratorMover, protocols::symmetry::SymDockingSlideIntoContact, protocols::abinitio::KinematicAbinitio, protocols::indexed_structure_store::movers::SegmentSequenceProfileMover, protocols::ligand_docking::Rotate, protocols::membrane::OptimizeProteinEmbeddingMover, protocols::membrane::MPMutateRelaxMover, protocols::carbohydrates::LinkageConformerMover, protocols::docking::DockMCMProtocol, protocols::membrane::AddMembraneSpanConstraint, protocols::membrane::AddMembraneSpanTermZConstraint, protocols::rbsegment_relax::CCDMoveWrapper, protocols::simple_moves::RingConformationMover, protocols::flxbb::InterlockAroma, protocols::helical_bundle::BundleGridSampler, protocols::match::MatcherMover, protocols::relax::LocalRelax, protocols::carbohydrates::SimpleGlycosylateMover, protocols::cryst::SetCrystWeightMover, protocols::cyclic_peptide::CrosslinkerMover, protocols::helical_bundle::PerturbBundle, protocols::helical_bundle::PerturbBundleHelix, protocols::loophash::LoopHashDiversifier, protocols::minimization_packing::RotamerTrialsMover, protocols::pose_creation::MergePDBMover, protocols::simple_moves::bin_transitions::InitializeByBins, protocols::simple_moves::bin_transitions::PerturbByBins, protocols::simple_moves::SimpleThreadingMover, protocols::antibody::constraints::CDRDihedralConstraintMover, protocols::antibody_legacy::GraftMover, protocols::helical_bundle::MakeBundle, protocols::loops::loop_mover::LoopMover, protocols::loops::loop_mover::refine::LoopMover_Refine_CCD, protocols::membrane::visualize::VisualizeEmbeddingMover, protocols::ncbb::oop::OopDockDesignProtocol, protocols::recces::sampler::rna::MC_RNA_KIC_Sampler, protocols::simple_moves::CoupledMover, protocols::simple_moves::sidechain_moves::SidechainMCMover, protocols::splice::Splice, protocols::surface_docking::SurfaceDockingProtocol, protocols::antibody::RefineOneCDRLoop, protocols::cryst::UpdateCrystInfo, protocols::features::TrajectoryReportToDB, protocols::forge::remodel::RemodelAccumulator, protocols::moves::ProfilerMover, protocols::ncbb::NcbbDockDesignProtocol, protocols::antibody::H3RefineCCD, protocols::indexed_structure_store::movers::DirectSegmentLookupMover, protocols::ligand_docking::StartFrom, protocols::simple_moves::BBGaussianMover, protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMover, protocols::abinitio::abscript::ConstraintPreparer, protocols::canonical_sampling::CanonicalSamplingMover, protocols::minimization_packing::BoltzmannRotamerMover, protocols::minimization_packing::RotamerTrialsMinMover, protocols::simple_moves::ShakeStructureMover, protocols::canonical_sampling::TemperatureController, protocols::denovo_design::movers::BuildDeNovoBackboneMover, protocols::fldsgn::MatchResiduesMover, protocols::hybridization::BackboneTorsionPerturbation, protocols::hybridization::BackboneTorsionSampler, protocols::membrane::RandomPositionRotationMover, protocols::moves::MonteCarloUtil, protocols::pose_creation::MakeJunctionsMover, protocols::simple_moves::ReportEffectivePKA, protocols::abinitio::KinematicTaskControl, protocols::antibody::AntibodyCDRGrafter, protocols::ligand_docking::HighResDocker, protocols::rigid::WholeBodyTranslationMover, protocols::rosetta_scripts::ParsedProtocol, protocols::dna::DnaInterfacePacker, protocols::simple_moves::ConvertRealToVirtualMover, protocols::ligand_docking::TransformEnsemble, protocols::membrane::SetMembranePositionMover, protocols::simple_moves::BackboneMover, protocols::simple_moves::ConvertVirtualToRealMover, protocols::simple_moves::UniformRotationMover, protocols::canonical_sampling::MetropolisHastingsMover, protocols::carbohydrates::GlycanTreeSampler, protocols::helical_bundle::BackboneGridSampler, protocols::antibody::LHRepulsiveRampLegacy, protocols::docking::DockMinMover, protocols::enzymatic_movers::EnzymaticMover, protocols::ligand_docking::Transform, protocols::minimization_packing::MinPackMover, protocols::moves::MoverContainer, protocols::canonical_sampling::SidechainMetropolisHastingsMover, protocols::carbohydrates::GlycanTreeMinMover, protocols::docking::DockingInitialPerturbation, protocols::forge::constraints::InvrotTreeRCG, protocols::ligand_docking::Translate, protocols::loophash::LoopHashLibrary, protocols::simple_moves::ScoreMover, protocols::stepwise::modeler::StepWiseConnectionSampler, protocols::canonical_sampling::AsyncMPITemperingBase, protocols::kinematic_closure::BalancedKicMover, protocols::ligand_docking::LigandDockProtocol, protocols::monte_carlo::MonteCarloTest, protocols::surface_docking::CentroidRelaxMover, protocols::hybridization::DomainAssembly, protocols::hydrate::Hydrate, protocols::matdes::MatDesGreedyOptMutationMover, protocols::monte_carlo::MonteCarloReset, protocols::moves::StructureRestrictor, protocols::sewing::movers::AssemblyMover, protocols::antibody::AntibodyNumberingConverterMover, protocols::ligand_docking::InterfaceScoreCalculator, protocols::loops::loop_mover::refine::LoopMover_Refine_KIC, protocols::protein_interface_design::movers::TryRotamers, protocols::toolbox::SamplerPlusPlus, protocols::antibody::snugdock::SnugDock, protocols::denovo_design::movers::FoldTreeFromFoldGraphMover, protocols::loop_grower::FragmentExtension, protocols::minimization_packing::RotamerizeMover, protocols::canonical_sampling::ParallelTempering, protocols::comparative_modeling::ExtraThreadingMover, protocols::forge::remodel::RemodelLigandHandler, protocols::LoopRebuild, protocols::monte_carlo::MonteCarloRecover, protocols::protein_interface_design::movers::PlaceSimultaneouslyMover, protocols::rna::movers::ErraserMinimizerMover, protocols::simple_moves::WriteFiltersToPose, protocols::antibody::constraints::ParatopeEpitopeSiteConstraintMover, protocols::calc_taskop_movers::DesignRepackMover, protocols::docking::DockSetupMover, protocols::hybridization::ChunkTrialMover, protocols::hybridization::InsertChunkMover, protocols::legacy_sewing::LegacyAppendAssemblyMover, protocols::loops::loop_mover::refine::LoopRefineInnerCycle, protocols::loops::loop_mover::refine::ShearMinCCDTrial, protocols::protein_interface_design::movers::LoopRemodel, protocols::rbsegment_relax::RBSegmentMover, protocols::rna::setup::RNA_JobDistributor, protocols::toolbox::match_enzdes_util::AlignPoseToInvrotTreeMover, protocols::abinitio::abscript::AbscriptMover, protocols::abinitio::abscript::RigidChunkCM, protocols::chemically_conjugated_docking::UBQ_GTPaseMover, protocols::docking::SidechainMinMover, protocols::hybridization::CartesianHybridize, protocols::loops::loop_mover::refine::LoopMover_Refine_Backrub, protocols::minimization_packing::PertMinMover, protocols::rna::denovo::movers::RNA_FragmentMover, protocols::simple_filters::EvaluatedTrialMover, protocols::aa_composition::AddCompositionConstraintMover, protocols::aa_composition::ClearCompositionConstraintsMover, protocols::abinitio::abscript::AbscriptLoopCloserCM, protocols::calc_taskop_movers::ConsensusDesignMover, protocols::coupled_moves::CoupledMovesProtocol, protocols::design_opt::GreedyOptMutationMover, protocols::flexpep_docking::FlexPepDockingAbInitio, protocols::ncbb::SecStructMinimizeMover, protocols::nonlocal::BiasedFragmentMover, protocols::protein_interface_design::movers::LoopMoverFromCommandLine, protocols::recces::scratch::ThermalMinimizer, protocols::rigid::UniformRigidBodyCM, protocols::simple_moves::StorePoseSnapshot, protocols::analysis::LoopAnalyzerMover, protocols::canonical_sampling::TemperingBase, protocols::docking::ConformerSwitchMover, protocols::electron_density::VoxelSpacingRefinementMover, protocols::hotspot_hashing::movers::PlaceProbeMover, protocols::pose_creation::MakePolyXMover, protocols::recces::scratch::ThermalSamplingMover, protocols::rigid::MembraneNormalPerturbationMover, protocols::rotamer_recovery::RotamerRecoveryMover, protocols::symmetry::SymDockingInitialPerturbation, protocols::analysis::simple_metrics::RunSimpleMetricsMover, protocols::antibody::snugdock::SnugDockProtocol, protocols::backbone_moves::local_backbone_mover::LocalBackboneMover, protocols::environment::CoMTrackerCM, protocols::hybridization::CartesianSampler, protocols::moves::FilterReporterMover, protocols::moves::JumpOutMover, protocols::pose_length_moves::ConnectChainsMover, protocols::simple_moves::DumpSingleResidueRotamers, protocols::simple_moves::ReturnSidechainMover, protocols::stepwise::legacy::modeler::protein::StepWiseProteinPoseSetup, protocols::stepwise::sampler::rna::RNA_KIC_Sampler, protocols::aa_composition::AddMHCEpitopeConstraintMover, protocols::aa_composition::AddNetChargeConstraintMover, protocols::abinitio::abscript::FragmentCM, protocols::antibody_legacy::AntibodyModeler, protocols::contact_map::ContactMap, protocols::enzdes::EnzRepackMinimize, protocols::flexpep_docking::FlexPepDockingLowRes, protocols::flexpep_docking::FlexPepDockingProtocol, protocols::generalized_kinematic_closure::GeneralizedKIC, protocols::ligand_docking::UnconstrainedTorsionsMover, protocols::loops::loop_closure::kinematic_closure::KinematicWrapper, protocols::loops::loop_mover::refine::SmallMinCCDTrial, protocols::md::CartesianMD, protocols::moves::ChangeFoldTreeMover, protocols::rosetta_scripts::MultiplePoseMover, protocols::simple_moves::ConstrainToIdealMover, protocols::simple_moves::DME_FilterMover, protocols::symmetric_docking::SymFoldandDockRbTrialMover, protocols::antibody::LHRepulsiveRamp, protocols::cyclic_peptide::TryDisulfPermutations, protocols::denovo_design::movers::RotateSegmentMover, protocols::docking::DockingEnsemblePrepackProtocol, protocols::enzdes::PackRotamersMoverPartGreedy, protocols::floppy_tail::FloppyTailMover, protocols::loops::loop_mover::refine::RepackTrial, protocols::minimization_packing::DisulfideOptimizationMover, protocols::normalmode::NormalModeRelaxMover, protocols::protein_interface_design::movers::DisulfideMover, protocols::recces::sampler::rna::MC_RNA_OneJump, protocols::rna::movers::RNAIdealizeMover, protocols::simple_moves::Tumble, protocols::cyclic_peptide::SymmetricCycpepAlign, protocols::membrane::benchmark::SampleTiltAngles, protocols::membrane::MPLipidAccessibility, protocols::moves::DsspMover, protocols::rbsegment_relax::FragInsertAndAlignMover, protocols::sewing::movers::LigandBindingAssemblyMover, protocols::simple_moves::ShortBackrubMover, protocols::aa_composition::AddHelixSequenceConstraintsMover, protocols::antibody::constraints::ParatopeSiteConstraintMover, protocols::antibody::H3PerturbCCD, protocols::antibody::RefineOneCDRLoopCentroid, protocols::farnesyl::InstallFarnesylMover, protocols::farnesyl::SampleFarnesylMover, protocols::minimization_packing::RepackSidechainsMover, protocols::ncbb::SecStructFinder, protocols::rbsegment_relax::RBSegmentRelax, protocols::rosetta_scripts::AdditionalOutputWrapper, protocols::sewing::movers::AppendAssemblyMover, protocols::simple_moves::SetTorsion, protocols::splice::TailSegmentMover, protocols::symmetric_docking::SymDockingLowRes, protocols::symmetry::SetupForSymmetryMover, protocols::analysis::GlycanInfoMover, protocols::denovo_design::movers::DeclareStructureDataCovalentBondMover, protocols::md::MDBase, protocols::minimization_packing::SaneMinMover, protocols::network::UIMover, protocols::noesy_assign::DistanceScoreMover, protocols::normalmode::NormalModeMinimizer, protocols::protein_interface_design::movers::LoopFinder, protocols::rna::denovo::movers::RNA_Relaxer, protocols::rna::denovo::movers::RNP_HighResMover, protocols::simple_moves::CopyRotamerMover, protocols::simple_moves::DisulfideInsertionMover, protocols::simple_moves::MSDMover, protocols::simple_moves::PoseFromPoseResourceMover, protocols::simple_moves::TorsionDOFMover, protocols::symmetric_docking::SymSidechainMinMover, protocols::abinitio::abscript::AbscriptStageMover, protocols::antibody::CDRsMinPackMin, protocols::antibody::ModelCDRH3, protocols::constraint_movers::CstInfoMover, protocols::docking::DockingPrepackProtocol, protocols::matdes::SymDofMover, protocols::minimization_packing::symmetry::TaskAwareSymMinMover, protocols::moves::FilterReportAsPoseExtraScoresMover, protocols::protein_interface_design::movers::SaveAndRetrieveSidechains, protocols::rna::denovo::movers::RNA_DeNovoMasterMover, protocols::rna::denovo::RNA_FragmentMonteCarlo, protocols::rosetta_scripts::MultipleOutputWrapper, protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler, protocols::stepwise::monte_carlo::mover::AddMover, protocols::stepwise::monte_carlo::mover::AddOrDeleteMover, protocols::docking::EllipsoidalRandomizationMover, protocols::enzdes::AddOrRemoveMatchCsts, protocols::loophash::FastGapMover, protocols::motifs::MotifDnaPacker, protocols::moves::PDBDumpMover, protocols::pb_potential::SetupPoissonBoltzmannPotential, protocols::rna::denovo::coarse::MultipleDomainMover, protocols::rna::denovo::RNA_DeNovoProtocol, protocols::simple_moves::asym_fold_and_dock::AsymFoldandDockRbTrialMover, protocols::simple_moves::BBDihedralSamplerMover, protocols::simple_moves::MutateResidue, protocols::simple_moves::rational_mc::RationalMonteCarlo, protocols::splice::SpliceOut, protocols::stepwise::legacy::modeler::rna::RNA_AnalyticLoopCloser, protocols::stepwise::modeler::StepWiseMinimizer, protocols::stepwise::monte_carlo::mover::DeleteMover, protocols::surface_docking::FullatomRelaxMover, protocols::antibody::LHSnugFitLegacy, protocols::denovo_design::movers::BridgeChainsMover, protocols::denovo_design::movers::SealFoldTreeMover, protocols::enzdes::EnzdesFlexBBProtocol, protocols::evolution::NucleotideMutation, protocols::moves::FilterMover, protocols::membrane::HelixFromSequence, protocols::qsar::RenderGridsToKinemage, protocols::recces::sampler::MC_OneTorsion, protocols::simple_moves::AddCavitiesMover, protocols::splice::SpliceInTail, protocols::stepwise::legacy::modeler::rna::StepWiseRNA_PoseSetup, protocols::stepwise::modeler::StepWiseModeler, protocols::constraint_movers::ResidueTypeConstraintMover, protocols::forge::constraints::RemoveRemodelCsts, protocols::loops::loop_mover::IndependentLoopMover, protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer, protocols::protein_interface_design::movers::RepackMinimize, protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover, protocols::rna::denovo::coarse::CoarseRNA_LoopCloser, protocols::rna::setup::RNA_CSA_JobDistributor, protocols::simple_moves::StructProfileMover, protocols::splice::SpliceIn, protocols::stepwise::monte_carlo::rna::RNA_AddDeleteMonteCarlo, protocols::abinitio::AbrelaxMover, protocols::environment::ScriptCM, protocols::forge::remodel::RemodelConstraintGenerator, protocols::helical_bundle::FitSimpleHelix, protocols::legacy_sewing::LegacyAssemblyMover, protocols::moves::WhileMover, protocols::protein_interface_design::movers::DesignMinimizeHbonds, protocols::protein_interface_design::movers::DockWithHotspotMover, protocols::rna::setup::RNA_MonteCarloJobDistributor, protocols::simple_moves::chiral::ChiralMover, protocols::simple_moves::RandomTorsionMover, protocols::simple_moves::SetupMetalsMover, protocols::splice::SpliceInAntibody, protocols::stepwise::monte_carlo::mover::StepWiseMasterMover, protocols::stepwise::monte_carlo::StepWiseMonteCarlo, protocols::stepwise::sampler::StepWiseSamplerSized, protocols::abinitio::abscript::StructPerturberCM, protocols::antibody::RefineBetaBarrel, protocols::canonical_sampling::HamiltonianExchange, protocols::denovo_design::movers::AlignResiduesMover, protocols::enzdes::ModifyStoredRBConfs, protocols::fibril::SetupForFibrilMover, protocols::flexpack::FlexPacker, protocols::indel::IndelOptimizationMover, protocols::ligand_docking::Rotates, protocols::minimization_packing::TaskAwareMinMover, protocols::moves::IfMover, protocols::protein_interface_design::movers::PlacementAuctionMover, protocols::rbsegment_relax::OptimizeThreadingMover, protocols::relax::RepeatProteinRelax, protocols::simple_moves::MembraneTopology, protocols::stepwise::modeler::protein::StepWiseProteinBackboneSampler, protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler, protocols::stepwise::sampler::StepWiseSamplerOneValue, protocols::antibody::AntibodyModelerProtocol, protocols::antibody::GraftCDRLoopsProtocol, protocols::backrub::BackrubProtocol, protocols::canonical_sampling::SimulatedTempering, protocols::canonical_sampling::ThermodynamicObserver, protocols::comparative_modeling::PartialThreadingMover, protocols::denovo_design::movers::AddSegmentDataMover, protocols::denovo_design::movers::MakeAsymmetricStructureDataMover, protocols::enzdes::SecondaryMatchProtocol, protocols::fold_from_loops::NubInitioMover, protocols::ligand_docking::MinimizeBackbone, protocols::loophash::Mover_LoopHashRefine, protocols::mean_field::GenMeanFieldMover, protocols::moves::IteratedConvergenceMover, protocols::moves::RepeatMover, protocols::pose_length_moves::AnalyzeLoopModeling, protocols::protein_interface_design::movers::BackrubDDMover, protocols::protein_interface_design::movers::SetupHotspotConstraintsMover, protocols::recces::sampler::rna::MC_RNA_Sugar, protocols::rna::denovo::movers::RNA_Minimizer, protocols::simple_ddg::ddG, protocols::splice::SpliceOutAntibody, protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_Closer, protocols::anchored_design::AnchoredDesignMover, protocols::antibody::H3CterInsert, protocols::cluster::GatherPosesMover, protocols::denovo_design::movers::SetResidueAliasMover, protocols::hybridization::WeightedFragmentSmoothTrialMover, protocols::pose_length_moves::InsertResMover, protocols::relax::AtomCoordinateCstMover, protocols::rigid::RollMover, protocols::rigid::UniformRigidBodyMover, protocols::rna::denovo::movers::RNA_HelixMover, protocols::rna::denovo::output::RNA_FragmentMonteCarloOutputter, protocols::simple_moves::MissingDensityToJumpMover, protocols::stepwise::modeler::rna::o2prime::O2PrimePacker, protocols::stepwise::modeler::rna::phosphate::PhosphateMover, protocols::stepwise::monte_carlo::mover::ResampleMover, protocols::stepwise::sampler::StepWiseSamplerSizedComb, protocols::struct_fragment::StructFragmentMover, protocols::fold_from_loops::movers::NubInitioLoopClosureMover, protocols::ligand_docking::FinalMinimizer, protocols::loophash::LoopHashRelaxProtocol, protocols::nonlocal::HelixRotate, protocols::rigid::MembraneCenterPerturbationMover, protocols::rna::movers::RNA_LoopCloser, protocols::simple_moves::DeleteChainsMover, protocols::simple_moves::FindConsensusSequence, protocols::simple_moves::SwitchResidueTypeSetMover, protocols::stepwise::legacy::modeler::protein::StepWiseProteinMinimizer, protocols::stepwise::modeler::rna::sugar::VirtualSugarSampler, protocols::stepwise::monte_carlo::mover::FromScratchMover, protocols::stepwise::monte_carlo::rna::RNA_O2PrimeMover, protocols::stepwise::sampler::StepWiseSamplerRingConformer, protocols::task_operations::StoreCompoundTaskMover, protocols::antibody::GraftedStemOptimizer, protocols::constraint_generator::RemoveConstraints, protocols::constraint_movers::ConstraintSetMover, protocols::dna::DesignProteinBackboneAroundDNA, protocols::dna::DnaInterfaceMultiStateDesign, protocols::domain_assembly::AssembleLinkerMover, protocols::environment::EnvMover, protocols::ligand_docking::SlideTogether, protocols::loophash::LoopHashMoverWrapper, protocols::magnesium::MgMonteCarlo, protocols::metal_interface::ZincHeterodimerMover, protocols::nonlocal::SheetTranslate, protocols::rigid::RotateJumpAxisMover, protocols::simple_moves::CyclizationMover, protocols::simple_moves::FavorSequenceProfile, protocols::simple_moves::RandomOmegaFlipMover, protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger, protocols::stepwise::monte_carlo::mover::VaryLoopLengthMover, protocols::carbohydrates::IdealizeAnomericHydrogens, protocols::dna::SeparateDnaFromNonDna, protocols::fold_from_loops::movers::DisplayPoseLabelsMover, protocols::loop_build::LoopmodelWrapper, protocols::magnesium::MgHydrater, protocols::make_rot_lib::MakeRotLibMover, protocols::matdes::ExtractSubposeMover, protocols::moves::CyclicMover, protocols::protein_interface_design::movers::BestHotspotCstMover, protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover, protocols::simple_moves::ModifyVariantTypeMover, protocols::symmetry::SymmetricRMSMover, protocols::topology_broker::RigidBodyRandomTMHMover, protocols::abinitio::ResolutionSwitcher, protocols::denovo_design::movers::ExtendChainMover, protocols::enzdes::EnzdesFixBBProtocol, protocols::loops::loop_mover::LoopCM, protocols::medal::MedalMover, protocols::pose_length_moves::FixAllLoopsMover, protocols::protein_interface_design::movers::LoopOver, protocols::protein_interface_design::movers::PlacementMinimizationMover, protocols::recces::sampler::MC_Comb, protocols::simple_moves::BBConRotMover, protocols::simple_moves::RepulsiveOnlyMover, protocols::simple_moves::TailsScoreMover, protocols::stepwise::modeler::packer::SideChainCopier, protocols::stepwise::modeler::packer::StepWisePacker, protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser, protocols::stepwise::sampler::StepWiseSamplerComb, protocols::symmetric_docking::SymFoldandDockSlideTrialMover, protocols::abinitio::DomainAssembly, protocols::cyclic_peptide::FlipChiralityMover, protocols::enzdes::BackboneSampler, protocols::hybridization::MRMover, protocols::ligand_docking::CompoundTranslate, protocols::ligand_docking::ComputeLigandRDF, protocols::ligand_docking::TetherLigand, protocols::membrane::benchmark::MakeCanonicalHelix, protocols::pose_creation::MergePDBatOverlapMover, protocols::protein_interface_design::movers::MapHotspot, protocols::recces::RECCES_Mover, protocols::simple_moves::asym_fold_and_dock::AsymFoldandDockMoveRbJumpMover, protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSamplerWithResidueList, protocols::vardist_solaccess::LoadVarSolDistSasaCalculatorMover, protocols::ub_e2c::ubi_e2c_modeler, protocols::constraint_generator::AddConstraints, protocols::cryst::ReportGradientsMover, protocols::domain_assembly::PostDockAssemblyScorer, protocols::electron_density::SetupForDensityScoringMover, protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMover, protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMover, protocols::grafting::simple_movers::ReplaceRegionMover, protocols::ligand_docking::AddHydrogen, protocols::ligand_docking::GrowLigand, protocols::ligand_docking::MinimizeLigand, protocols::magnesium::MgWaterHydrogenPacker, protocols::minimization_packing::SetReturningPackRotamersMover, protocols::simple_moves::oop::OopRandomSmallMover, protocols::simple_moves::triazolamer::TriazolamerRandomSmallMover, protocols::rbsegment_relax::IdealizeHelicesMover, protocols::recces::sampler::MC_Any, protocols::simple_moves::sidechain_moves::SetChiMover, protocols::simple_moves::TorsionSetMover, protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker, protocols::stepwise::modeler::rna::checker::RNA_ChainClosureChecker, protocols::stepwise::modeler::rna::sugar::VirtualSugarJustInTimeInstantiator, protocols::stepwise::monte_carlo::rna::RNA_TorsionMover, protocols::stepwise::sampler::StepWiseSamplerOneTorsion, protocols::surface_docking::SurfaceOrientMover, protocols::antibody::GraftOneCDRLoop, protocols::features::InterfaceDdGMover, protocols::fold_from_loops::movers::AlignByResidueSelectorMover, protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMover, protocols::frag_picker::nonlocal::NonlocalFrags, protocols::grafting::simple_movers::KeepRegionMover, protocols::legacy_sewing::LegacyAddStartnodeFragments, protocols::ligand_docking::AddHydrogens, protocols::ligand_docking::LigandDesign, protocols::ligand_docking::RandomConformers, protocols::ligand_docking::RigidSearchMover, protocols::pose_creation::ExtendedPoseMover, protocols::protein_interface_design::movers::HotspotHasherMover, protocols::protein_interface_design::movers::InterfaceRecapitulationMover, protocols::protein_interface_design::movers::PlaceOnLoop, protocols::rna::movers::RNA_DeNovoOptimizer, protocols::seeded_abinitio::SegmentHybridizer, protocols::stepwise::sampler::StepWiseSamplerSizedAny, protocols::fold_from_loops::movers::MoveMapFactoryToNamedMoveMapMover, protocols::moves::VectorPoseMover, protocols::simple_moves::a3b_hbs::A3BHbsPatcher, protocols::simple_moves::oop::OopRandomPuckMover, protocols::simple_moves::RepeatPropagationMover, protocols::seeded_abinitio::SeedFoldTree, protocols::simple_moves::CombinePoseMover, protocols::simple_moves::CopyDofMover, protocols::simple_moves::ProlineFixMover, protocols::simple_moves::SuperimposeMover, protocols::stepwise::modeler::precomputed::PrecomputedLibraryMover, protocols::stepwise::modeler::rna::sugar::VirtualSugarSamplerFromStringList, protocols::comparative_modeling::StealLigandMover, protocols::fold_from_loops::movers::SavePDBInfoMover, protocols::ligand_docking::WriteLigandMolFile, protocols::simple_moves::PeptideStapleMover, protocols::protein_interface_design::movers::PrepackMover, protocols::protein_interface_design::movers::VLB, protocols::residue_selectors::StoreResidueSubsetMover, protocols::rosetta_scripts::SavePoseMover, protocols::seeded_abinitio::CloseFold, protocols::symmetric_docking::SymDockBaseProtocol, protocols::symmetric_docking::SymFoldandDockMoveRbJumpMover, protocols::dna::DnaInterfaceMinMover, protocols::grafting::simple_movers::DeleteRegionMover, protocols::matdes::SchemePlaceMotifsMover, protocols::moves::CompositionMover, protocols::moves::MoverForPoseList, protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover, protocols::protein_interface_design::movers::PeptideStapleDesignMover, protocols::protein_interface_design::movers::SpinMover, protocols::simple_moves::PDBReloadMover, protocols::stepwise::modeler::rna::bulge::BulgeUnApplyMover, protocols::task_operations::StoreCombinedStoredTasksMover, protocols::antibody::CloseOneCDRLoop, protocols::cyclic_peptide::PeptideCyclizeMover, protocols::grafting::simple_movers::InsertPoseIntoPoseMover, protocols::ligand_docking::RandomConformerMover, protocols::magnesium::MgScanner, protocols::medal::MedalExchangeMover, protocols::mpi_refinement::StructAvrgMover, protocols::simple_moves::oop::OopMover, protocols::simple_moves::oop::OopPatcher, protocols::simple_moves::triazolamer::TriazolamerMover, protocols::protein_interface_design::movers::BuildAlaPose, protocols::protein_interface_design::movers::RandomMutation, protocols::protein_interface_design::movers::SetAtomTree, protocols::protein_interface_design::movers::TopologyBrokerMover, protocols::rbsegment_relax::MakeStarTopologyMover, protocols::rigid::RigidBodyMotionMover, protocols::simple_moves::DumpPdb, protocols::simple_moves::WriteSSEMover, protocols::stepwise::modeler::rna::bulge::BulgeApplyMover, protocols::stepwise::modeler::rna::sugar::SugarInstantiateMover, protocols::stepwise::modeler::rna::sugar::SugarVirtualizeMover, protocols::comparative_modeling::LoopRelaxThreadingMover, protocols::domain_assembly::AddAssemblyConstraints, protocols::hybridization::WeightedFragmentTrialMover, protocols::magnesium::MgMinimizer, protocols::magnesium::MgOrbitalFrameFinder, protocols::moves::NullMover, protocols::simple_moves::hbs::HbsPatcher, protocols::qsar::qsarMover, protocols::simple_moves::DeleteChainMover, protocols::simple_moves::SwitchChainOrderMover, protocols::star::StarAbinitio, protocols::symmetry::DetectSymmetry, protocols::task_operations::StoreTaskMover, protocols::analysis::PackStatMover, protocols::calc_taskop_movers::ForceDisulfidesMover, protocols::comparative_modeling::StealSideChainsMover, protocols::cyclic_peptide::PeptideStubMover, protocols::domain_assembly::CombineChainsMover, protocols::electron_density::ReportFSC, protocols::ligand_docking::ga_ligand_dock::GALigandDock, protocols::protein_interface_design::movers::DockAndRetrieveSidechains, protocols::protein_interface_design::movers::LoopLengthChange, protocols::protein_interface_design::movers::SetTemperatureFactor, protocols::rbsegment_relax::AutoRBMover, protocols::rigid::MovePoseToMembraneCenterMover, protocols::seeded_abinitio::CAcstGenerator, protocols::seeded_abinitio::GrowPeptides, protocols::simple_moves::ChainSplitMover, protocols::simple_moves::LoadUnboundRotMover, protocols::constraint_movers::AddConstraintsToCurrentConformationMover, protocols::electron_density::ScaleMapIntensities, protocols::simple_moves::LoadPDBMover, protocols::protein_interface_design::movers::FavorNativeResiduePreCycle, protocols::relax::MiniRelax, protocols::seeded_abinitio::SeedSetupMover, protocols::simple_moves::AddPDBInfoMover, protocols::splice::RBOutMover, protocols::splice::RotLibOut, protocols::protein_interface_design::movers::AddChainBreak, protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots, protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle, protocols::protein_interface_design::movers::PatchdockTransform, protocols::protein_interface_design::movers::ShoveResidueMover, protocols::protein_interface_design::movers::SubroutineMover, protocols::RotamerDump::RotamerDumpMover, protocols::seeded_abinitio::CoordinateCst, protocols::seeded_abinitio::DefineMovableLoops, protocols::seeded_abinitio::SwapSegment, protocols::simple_moves::CutChainMover, protocols::cutoutdomain::CutOutDomain, protocols::simple_moves::AddResidueLabelMover, protocols::simple_moves::AlignChainMover, protocols::comparative_modeling::RecoverSideChainsMover, protocols::protein_interface_design::movers::TaskAwareCsts, protocols::simple_moves::AddJobPairData, protocols::simple_moves::SequenceProfileMover, protocols::simple_moves::VirtualRootMover, protocols::splice::RBInMover, protocols::loops::FoldTreeFromLoops, protocols::simple_moves::AddChainMover, protocols::simple_moves::ContingentAcceptMover, protocols::splice::AlignEndsMover, protocols::docking::stateless::SaneDockingProtocol, protocols::monte_carlo::ResetBaselineMover, protocols::simple_moves::FavorSymmetricSequence, protocols::simple_moves::ReportXYZ, protocols::cyclic_peptide::CreateDistanceConstraint, protocols::simple_moves::PSSM2BfactorMover, protocols::cyclic_peptide::CreateAngleConstraint, protocols::cyclic_peptide::CreateTorsionConstraint, protocols::cyclic_peptide::DeclareBond, protocols::loop_build::LoopBuildMover, protocols::constraint_movers::ClearConstraintsMover, protocols::simple_moves::ResetFoldTree, protocols::simple_moves::SaveSequenceToCommentsMover, and protocols::RBSegmentRelaxImpl.

Referenced by protocols::comparative_modeling::RecoverSideChainsMover::apply(), protocols::jobdist::main_atom_tree_diff_mover(), protocols::jobdist::main_plain_mover(), protocols::jobdist::main_plain_pdb_mover(), protocols::jobdist::not_universal_main(), test_move(), and protocols::jobdist::universal_main().

virtual void protocols::moves::Mover::clear_info ( )
inlinevirtual

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

References info_.

MoverOP protocols::moves::Mover::clone ( ) const
virtual

Return a clone of the Mover object.

clone is meant to return an OP'ed deep copy of this object. This really should be a pure virtual in the base class, but adding pure virtuals to Mover would massively disrupt the code. This default implementation crashes at runtime instead of compiletime if you try to call it. If this code is causing you problems, your Mover needs to override this function.

Reimplemented in protocols::loop_grower::LoopGrower, protocols::rigid::RigidBodyTransMover, protocols::rigid::RigidBodyTiltMover, protocols::rbsegment_relax::StrandTwistingMover, protocols::moves::PyMOLMover, protocols::hbnet::HBNet, protocols::rbsegment_relax::GaussianRBSegmentMover, protocols::simple_moves::ShearMover, protocols::denovo_design::movers::SetPoseSecstructFromStructureDataMover, protocols::cryst::MakeLatticeMover, protocols::cluster::AssignToClustersMover, protocols::membrane::TranslationRotationMover, protocols::cluster::ClusterPhilStyle_PoseReporter, protocols::cryst::SetRefinementOptionsMover, protocols::enzdes::UpdateEnzdesHeaderMover, protocols::simple_moves::SmallMover, protocols::rigid::RigidBodyPerturbNoCenterMover, protocols::cluster::ClusterPhilStyle_Loop, protocols::rbsegment_relax::SequenceShiftMover, protocols::cluster::ClusterPhilStyle, protocols::moves::SwitchMover, protocols::cryst::TagPoseWithRefinementStatsMover, protocols::fold_from_loops::NubInitioMover, protocols::membrane::SetMembraneCenterMover, protocols::moves::CycleMover, protocols::analysis::InterfaceAnalyzerMover, protocols::simple_moves::WaterBoxMover, protocols::simple_moves::BBG8T3AMover, protocols::cryst::UpdateSolventMover, protocols::canonical_sampling::FixedTemperatureController, protocols::cryst::DockLatticeMover, protocols::membrane::RotationMover, protocols::rbsegment_relax::HelicalGaussianMover, protocols::forge::remodel::ResidueVicinityRCG, protocols::abinitio::JumpingFoldConstraintsWrapper, protocols::carbohydrates::GlycanTreeModeler, protocols::motif_grafting::movers::MotifGraftMover, protocols::symmetry::ExtractAsymmetricPoseMover, protocols::comparative_modeling::LoopRelaxMover, protocols::docking::DockingSlideIntoContact, protocols::cryst::FitBfactorsMover, protocols::antibody::AntibodyCDRGrafter, protocols::carbohydrates::CreateGlycanSequonMover, protocols::enzdes::PredesignPerturbMover, protocols::moves::RandomMover, protocols::hybridization::FoldTreeHybridize, protocols::calc_taskop_movers::CreateSequenceMotifMover, protocols::membrane::SetMembraneNormalMover, protocols::moves::RampingMover, protocols::forge::remodel::GenericRemodelConstraintGenerator, protocols::symmetric_docking::SymDockProtocol, protocols::carbohydrates::SimpleGlycosylateMover, protocols::simple_moves::ClassicFragmentMover, protocols::carbohydrates::GlycanTreeSampler, protocols::sewing::movers::LigandBindingAssemblyMover, protocols::abinitio::ClassicAbinitio, protocols::carbohydrates::LinkageConformerMover, protocols::moves::TrialMover, protocols::cryst::LoadDensityMapMover, protocols::membrane::AddMembraneMover, protocols::abinitio::MembraneAbinitio, protocols::cryst::MakeLayerMover, protocols::rna::movers::RNAThreadAndMinimizeMover, protocols::relax::FastRelax, protocols::minimization_packing::PackRotamersMover, protocols::abinitio::FragmentSampler, protocols::symmetry::ExtractAsymmetricUnitMover, protocols::cyclic_peptide::CrosslinkerMover, protocols::sewing::hashing::AlignmentFileGeneratorMover, protocols::moves::SequenceMover, protocols::antibody::constraints::CDRDihedralConstraintMover, protocols::forge::remodel::RemodelLoopMover, protocols::minimization_packing::MinMover, protocols::forge::components::VarLengthBuild, protocols::carbohydrates::GlycanTreeMinMover, protocols::monte_carlo::GenericMonteCarloMover, protocols::cluster::EnsembleConstraints_Simple, protocols::docking::DockingInitialPerturbation, protocols::forge::remodel::RemodelMover, protocols::simple_moves::ChangeAndResetFoldTreeMover, protocols::cryst::RecomputeDensityMapMover, protocols::cryst::CrystRMS, protocols::hybridization::HybridizeProtocol, protocols::fold_from_loops::movers::SplitAndMixPoseMover, protocols::pose_length_moves::NearNativeLoopCloser, protocols::sewing::movers::AppendAssemblyMover, protocols::fldsgn::BluePrintBDR, protocols::comparative_modeling::ThreadingMover, protocols::fldsgn::potentials::SetSecStructEnergies, protocols::legacy_sewing::LegacyAssemblyConstraintsMover, protocols::sewing::movers::AssemblyMover, protocols::flxbb::FlxbbDesign, protocols::forge::components::BDR, protocols::rosetta_scripts::ParsedProtocol, protocols::abinitio::ConstraintFragmentSampler, protocols::simple_moves::BBDihedralSamplerMover, protocols::antibody::design::AntibodyDesignMover, protocols::docking::DockingProtocol, protocols::grafting::AnchoredGraftMover, protocols::minimization_packing::MinPackMover, protocols::fold_from_loops::movers::NubInitioLoopClosureMover, protocols::loops::loop_closure::ccd::CCDLoopClosureMover, protocols::membrane::TranslationMover, protocols::minimization_packing::RotamerTrialsMinMover, protocols::simple_moves::ConvertRealToVirtualMover, protocols::abinitio::FoldConstraints, protocols::simple_moves::ConvertVirtualToRealMover, protocols::simple_moves::PeriodicBoxMover, protocols::analysis::GlycanInfoMover, protocols::backrub::BackrubProtocol, protocols::analysis::simple_metrics::RunSimpleMetricsMover, protocols::simple_moves::SimpleThreadingMover, protocols::antibody::AntibodyNumberingConverterMover, protocols::hybridization::CartesianHybridize, protocols::simple_moves::CopyRotamerMover, protocols::denovo_design::movers::FastDesign, protocols::fldsgn::CircularPermutation, protocols::minimization_packing::PertMinMover, protocols::ncbb::oop::OopCreatorMover, protocols::nonlocal::SingleFragmentMover, protocols::symmetry::SetupNCSMover, protocols::farnesyl::InstallFarnesylMover, protocols::membrane::TransformIntoMembraneMover, protocols::recces::scratch::ThermalMinimizer, protocols::denovo_design::movers::FoldTreeFromFoldGraphMover, protocols::grafting::CCDEndsGraftMover, protocols::membrane::symmetry::SymmetricAddMembraneMover, protocols::recces::scratch::ThermalSamplingMover, protocols::loophash::LoopHashDiversifier, protocols::chemically_conjugated_docking::UBQ_GTPaseMover, protocols::electron_density::BfactorFittingMover, protocols::farnesyl::SampleFarnesylMover, protocols::fldsgn::potentials::SetAACompositionPotential, protocols::fold_from_loops::movers::DisplayPoseLabelsMover, protocols::hybridization::BackboneTorsionPerturbation, protocols::hybridization::BackboneTorsionSampler, protocols::ligand_docking::ProtLigEnsemble, protocols::protein_interface_design::movers::PlaceStubMover, protocols::docking::membrane::MPDockingMover, protocols::evolution::EvolutionaryDynamicsMover, protocols::abinitio::abscript::AbscriptMover, protocols::antibody::RefineOneCDRLoop, protocols::backbone_moves::local_backbone_mover::LocalBackboneMover, protocols::constraint_movers::CstInfoMover, protocols::membrane::FlipMover, protocols::membrane::MPLipidAccessibility, protocols::moves::MonteCarloUtil, protocols::denovo_design::movers::DeclareStructureDataCovalentBondMover, protocols::helical_bundle::MakeBundleHelix, protocols::ligand_docking::HighResEnsemble, protocols::minimization_packing::DisulfideOptimizationMover, protocols::monte_carlo::GenericSimulatedAnnealer, protocols::simple_moves::DumpSingleResidueRotamers, protocols::cyclic_peptide::SymmetricCycpepAlign, protocols::forge::constraints::InverseRotamersRCG, protocols::pose_creation::MergePDBMover, protocols::aa_composition::AddHelixSequenceConstraintsMover, protocols::cryst::UpdateCrystInfo, protocols::indexed_structure_store::movers::SegmentSequenceProfileMover, protocols::ncbb::oop::OopDockDesignProtocol, protocols::membrane::HelixFromSequence, protocols::loop_grower::FragmentExtension, protocols::ncbb::NcbbDockDesignProtocol, protocols::rna::movers::RNAIdealizeMover, protocols::simple_moves::PoseFromPoseResourceMover, protocols::splice::Splice, protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD, protocols::membrane::benchmark::SampleTiltAngles, protocols::membrane::SetMembranePositionMover, protocols::canonical_sampling::MetropolisHastingsMover, protocols::cryst::SetCrystWeightMover, protocols::denovo_design::movers::RotateSegmentMover, protocols::membrane::visualize::VisualizeMembraneMover, protocols::minimization_packing::RepackSidechainsMover, protocols::rigid::UniformRigidBodyCM, protocols::simple_moves::DeleteChainsMover, protocols::simple_moves::ReportEffectivePKA, protocols::abinitio::KinematicAbinitio, protocols::docking::DockingLowRes, protocols::grafting::simple_movers::KeepRegionMover, protocols::hybridization::CartesianSampler, protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC, protocols::membrane::TiltMover, protocols::moves::FilterReportAsPoseExtraScoresMover, protocols::relax::LocalRelax, protocols::canonical_sampling::SidechainMetropolisHastingsMover, protocols::denovo_design::movers::BridgeChainsMover, protocols::denovo_design::movers::SealFoldTreeMover, protocols::docking::DockMCMCycle, protocols::environment::CoMTrackerCM, protocols::helical_bundle::BundleGridSampler, protocols::membrane::AddMPLigandMover, protocols::membrane::SpinAroundPartnerMover, protocols::forge::remodel::RemodelGlobalFrame, protocols::helical_bundle::PerturbBundle, protocols::helical_bundle::PerturbBundleHelix, protocols::indexed_structure_store::movers::DirectSegmentLookupMover, protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCD, protocols::membrane::MPQuickRelaxMover, protocols::minimization_packing::RotamerTrialsMover, protocols::protein_interface_design::movers::TryRotamers, protocols::docking::DockMCMProtocol, protocols::features::ReportToDB, protocols::helical_bundle::MakeBundle, protocols::normalmode::NormalModeMinimizer, protocols::simple_moves::CoupledMover, protocols::surface_docking::SurfaceDockingProtocol, protocols::abinitio::abscript::ConstraintPreparer, protocols::relax::ClassicRelax, protocols::simple_moves::sidechain_moves::SidechainMCMover, protocols::carbohydrates::IdealizeAnomericHydrogens, protocols::carbohydrates::RingPlaneFlipMover, protocols::hbnet::HBNetStapleInterface, protocols::ligand_docking::Rotate, protocols::abinitio::abscript::FragmentJumpCM, protocols::abinitio::abscript::RigidChunkCM, protocols::denovo_design::movers::BuildDeNovoBackboneMover, protocols::dna::DnaInterfacePacker, protocols::loophash::LoopHashLibrary, protocols::minimization_packing::BoltzmannRotamerMover, protocols::abinitio::abscript::AbscriptLoopCloserCM, protocols::denovo_design::movers::AddSegmentDataMover, protocols::denovo_design::movers::MakeAsymmetricStructureDataMover, protocols::features::InterfaceDdGMover, protocols::loop_build::LoopMover_SlidingWindow, protocols::mean_field::GenMeanFieldMover, protocols::relax::membrane::MPFastRelaxMover, protocols::symmetric_docking::membrane::MPSymDockMover, protocols::canonical_sampling::ParallelTempering, protocols::denovo_design::movers::AlignResiduesMover, protocols::denovo_design::movers::SetResidueAliasMover, protocols::docking::DockingHighResLegacy, protocols::flxbb::InterlockAroma, protocols::loops::loop_mover::refine::ShearMinCCDTrial, protocols::membrane::visualize::VisualizeEmbeddingMover, protocols::simple_moves::BBGaussianMover, protocols::docking::membrane::MPDockingSetupMover, protocols::docking::membrane::MPFindInterfaceMover, protocols::matdes::MatDesGreedyOptMutationMover, protocols::simple_moves::bin_transitions::InitializeByBins, protocols::simple_moves::bin_transitions::PerturbByBins, protocols::simple_moves::RingConformationMover, protocols::simple_moves::StorePoseSnapshot, protocols::simple_moves::Tumble, protocols::antibody::snugdock::SnugDock, protocols::membrane::OptimizeMembranePositionMover, protocols::environment::ScriptCM, protocols::forge::constraints::InvrotTreeRCG, protocols::helical_bundle::BackboneGridSampler, protocols::loops::loop_mover::refine::LoopMover_Refine_CCD, protocols::rna::denovo::movers::RNA_FragmentMover, protocols::simple_moves::WriteFiltersToPose, protocols::abinitio::abscript::StructPerturberCM, protocols::relax::membrane::MPRangeRelaxMover, protocols::rotamer_recovery::RotamerRecoveryMover, protocols::simple_moves::sidechain_moves::SidechainMover, protocols::docking::membrane::QuickRelaxPartnersSeparately, protocols::forge::constraints::RemoveRemodelCsts, protocols::loops::loop_mover::refine::LoopMover_Refine_KIC, protocols::pose_creation::ExtendedPoseMover, protocols::simple_moves::ConstrainToIdealMover, protocols::symmetric_docking::SymDockingHiRes, protocols::coupled_moves::CoupledMovesProtocol, protocols::docking::DockingLowResEnsemble, protocols::electron_density::VoxelSpacingRefinementMover, protocols::features::TrajectoryReportToDB, protocols::fold_from_loops::movers::AlignByResidueSelectorMover, protocols::forge::remodel::RemodelAccumulator, protocols::hotspot_hashing::movers::PlaceSurfaceProbe, protocols::ligand_docking::HighResDocker, protocols::loop_modeler::LoopModeler, protocols::match::MatcherMover, protocols::membrane::benchmark::MakeCanonicalHelix, protocols::membrane::MembranePositionFromTopologyMover, protocols::surface_docking::CentroidRelaxMover, protocols::antibody::snugdock::SnugDockProtocol, protocols::constraint_generator::RemoveConstraints, protocols::design_opt::GreedyOptMutationMover, protocols::hydrate::Hydrate, protocols::matdes::SymDofMover, protocols::simple_moves::ReturnSidechainMover, protocols::antibody_legacy::AntibodyModeler, protocols::canonical_sampling::DbTrajectoryRecorder, protocols::denovo_design::DisulfidizeMover, protocols::fldsgn::MatchResiduesMover, protocols::forge::remodel::RemodelDesignMover, protocols::ligand_docking::TransformEnsemble, protocols::monte_carlo::MonteCarloReset, protocols::monte_carlo::MonteCarloTest, protocols::moves::IteratedConvergenceMover, protocols::pose_creation::MakeJunctionsMover, protocols::protein_interface_design::movers::LoopRemodel, protocols::membrane::MPMutateRelaxMover, protocols::simple_ddg::ddG, protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover, protocols::simple_moves::sidechain_moves::PerturbChiSidechainMover, protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover, protocols::antibody::H3RefineCCD, protocols::canonical_sampling::MetricRecorder, protocols::docking::EllipsoidalRandomizationMover, protocols::loops::loop_mover::refine::SmallMinCCDTrial, protocols::membrane::AddMembraneSpanConstraint, protocols::membrane::AddMembraneSpanTermZConstraint, protocols::moves::FilterReporterMover, protocols::pose_length_moves::ConnectChainsMover, protocols::backrub::BackrubMover, protocols::constraint_generator::AddConstraints, protocols::dna::DnaInterfaceMultiStateDesign, protocols::enzdes::EnzRepackMinimize, protocols::grafting::simple_movers::ReplaceRegionMover, protocols::ligand_docking::Transform, protocols::loops::loop_mover::refine::RepackTrial, protocols::pb_potential::SetupPoissonBoltzmannPotential, protocols::protein_interface_design::movers::LoopMoverFromCommandLine, protocols::protein_interface_design::movers::PlaceSimultaneouslyMover, protocols::backrub::BackrubSidechainMover, protocols::denovo_design::movers::ExtendChainMover, protocols::enzdes::PackRotamersMoverPartGreedy, protocols::enzymatic_movers::EnzymaticMover, protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMover, protocols::forge::constraints::NtoCConstraintGenerator, protocols::ligand_docking::Translate, protocols::loops::loop_mover::refine::LoopMover_Refine_Backrub, protocols::ncbb::SecStructFinder, protocols::protein_interface_design::movers::DisulfideMover, protocols::rigid::UniformRigidBodyMover, protocols::calc_taskop_movers::ConsensusDesignMover, protocols::docking::TemperedDocking, protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMover, protocols::grafting::simple_movers::InsertPoseIntoPoseMover, protocols::md::CartesianMD, protocols::monte_carlo::MonteCarloRecover, protocols::dna::DesignProteinBackboneAroundDNA, protocols::dna::SeparateDnaFromNonDna, protocols::flexpep_docking::FlexPepDockingProtocol, protocols::membrane::OptimizeProteinEmbeddingMover, protocols::simple_moves::SetTorsion, protocols::splice::SpliceOutTail, protocols::antibody::LHRepulsiveRampLegacy, protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMover, protocols::fold_from_loops::movers::MoveMapFactoryToNamedMoveMapMover, protocols::forge::remodel::RemodelLigandHandler, protocols::minimization_packing::symmetry::TaskAwareSymMinMover, protocols::stepwise::monte_carlo::mover::AddMover, protocols::analysis::LoopAnalyzerMover, protocols::dna::DnaInterfaceMinMover, protocols::environment::EnvMover, protocols::fold_from_loops::movers::SavePDBInfoMover, protocols::idealize::IdealizeMover, protocols::normalmode::NormalModeRelaxMover, protocols::pose_creation::MakePolyXMover, protocols::protein_interface_design::movers::SaveAndRetrieveSidechains, protocols::relax::AtomCoordinateCstMover, protocols::simple_moves::asym_fold_and_dock::AsymFoldandDockRbTrialMover, protocols::splice::SpliceOut, protocols::stepwise::monte_carlo::mover::DeleteMover, protocols::canonical_sampling::HamiltonianExchange, protocols::generalized_kinematic_closure::GeneralizedKIC, protocols::grafting::simple_movers::DeleteRegionMover, protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover, protocols::relax::CentroidRelax, protocols::rigid::RollMover, protocols::simple_moves::MutateResidue, protocols::splice::SpliceInTail, protocols::symmetry::SetupForSymmetryMover, protocols::canonical_sampling::SimulatedTempering, protocols::constraint_movers::ResidueTypeConstraintMover, protocols::docking::DockSetupMover, protocols::evolution::NucleotideMutation, protocols::loophash::LoopHashMoverWrapper, protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD_Moves, protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer, protocols::LoopRebuild, protocols::protein_interface_design::movers::LoopFinder, protocols::simple_moves::SetupMetalsMover, protocols::splice::SpliceIn, protocols::cyclic_peptide::TryDisulfPermutations, protocols::enzymatic_movers::GlycosyltransferaseMover, protocols::minimization_packing::TaskAwareMinMover, protocols::nonlocal::HelixRotate, protocols::protein_interface_design::movers::MapHotspot, protocols::protein_interface_design::movers::RepackMinimize, protocols::simple_moves::DisulfideInsertionMover, protocols::simple_moves::ShortBackrubMover, protocols::simple_moves::StructProfileMover, protocols::simple_moves::SwitchResidueTypeSetMover, protocols::splice::SpliceInAntibody, protocols::aa_composition::AddCompositionConstraintMover, protocols::aa_composition::AddMHCEpitopeConstraintMover, protocols::aa_composition::AddNetChargeConstraintMover, protocols::aa_composition::ClearCompositionConstraintsMover, protocols::anchored_design::AnchoredDesignMover, protocols::antibody::design::AntibodyDesignProtocol, protocols::motifs::MotifDnaPacker, protocols::moves::DsspMover, protocols::moves::RepeatMover, protocols::ncbb::SecStructMinimizeMover, protocols::nonlocal::SheetTranslate, protocols::protein_interface_design::movers::DesignMinimizeHbonds, protocols::protein_interface_design::movers::DockWithHotspotMover, protocols::protein_interface_design::movers::PlacementAuctionMover, protocols::qsar::RenderGridsToKinemage, protocols::rosetta_scripts::MultiplePoseMover, protocols::simple_moves::RandomTorsionMover, protocols::simple_moves::ScoreMover, protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler, protocols::struct_fragment::StructFragmentMover, protocols::antibody::H3PerturbCCD, protocols::canonical_sampling::PDBTrajectoryRecorder, protocols::canonical_sampling::ProgressBarObserver, protocols::ligand_docking::MinimizeBackbone, protocols::loophash::LoopHashRelaxProtocol, protocols::loophash::Mover_LoopHashRefine, protocols::minimization_packing::symmetry::SymMinMover, protocols::relax::RepeatProteinRelax, protocols::rna::denovo::RNA_DeNovoProtocol, protocols::simple_moves::MembraneTopology, protocols::splice::SpliceOutAntibody, protocols::contact_map::ContactMap, protocols::enzdes::AddOrRemoveMatchCsts, protocols::legacy_sewing::LegacyRepeatAssemblyMover, protocols::pose_length_moves::AnalyzeLoopModeling, protocols::protein_interface_design::movers::BackrubDDMover, protocols::rbsegment_relax::FragInsertAndAlignMover, protocols::simple_moves::MissingDensityToJumpMover, protocols::simple_moves::SuperimposeMover, protocols::stepwise::monte_carlo::mover::ResampleMover, protocols::ligand_docking::FinalMinimizer, protocols::pose_length_moves::InsertResMover, protocols::rna::denovo::coarse::MultipleDomainMover, protocols::rosetta_scripts::AdditionalOutputWrapper, protocols::stepwise::monte_carlo::mover::FromScratchMover, protocols::constraint_movers::ConstraintSetMover, protocols::enzdes::BackboneSampler, protocols::ligand_docking::SlideTogether, protocols::medal::MedalMover, protocols::moves::CyclicMover, protocols::rbsegment_relax::OptimizeThreadingMover, protocols::task_operations::StoreCompoundTaskMover, protocols::canonical_sampling::SilentTrajectoryRecorder, protocols::canonical_sampling::TrialCounterObserver, protocols::frag_picker::nonlocal::NonlocalFrags, protocols::ligand_docking::InterfaceScoreCalculator, protocols::matdes::ExtractSubposeMover, protocols::minimization_packing::SaneMinMover, protocols::rosetta_scripts::MultipleOutputWrapper, protocols::simple_moves::ModifyVariantTypeMover, protocols::simple_moves::RandomOmegaFlipMover, protocols::surface_docking::FullatomRelaxMover, protocols::helical_bundle::FitSimpleHelix, protocols::hybridization::MRMover, protocols::moves::StructureRestrictor, protocols::pose_creation::MergePDBatOverlapMover, protocols::protein_interface_design::movers::PlacementMinimizationMover, protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover, protocols::protein_interface_design::movers::SpinMover, protocols::antibody::LHSnugFitLegacy, protocols::ub_e2c::ubi_e2c_modeler, protocols::cyclic_peptide::FlipChiralityMover, protocols::loophash::FastGapMover, protocols::pose_length_moves::FixAllLoopsMover, protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover, protocols::rna::denovo::coarse::CoarseRNA_LoopCloser, protocols::simple_moves::asym_fold_and_dock::AsymFoldandDockMoveRbJumpMover, protocols::stepwise::legacy::modeler::rna::RNA_AnalyticLoopCloser, protocols::symmetric_docking::SymDockingLowRes, protocols::antibody::LHRepulsiveRamp, protocols::electron_density::SetupForDensityScoringMover, protocols::ligand_docking::ComputeLigandRDF, protocols::ligand_docking::GrowLigand, protocols::protein_interface_design::movers::SetupHotspotConstraintsMover, protocols::rna::denovo::movers::RNA_Minimizer, protocols::simple_moves::MSDMover, protocols::antibody::GraftCDRLoopsProtocol, protocols::constraint_movers::AddConstraintsToCurrentConformationMover, protocols::legacy_sewing::LegacyMonteCarloAssemblyMover, protocols::ligand_docking::AddHydrogens, protocols::ligand_docking::LigandDesign, protocols::simple_moves::sidechain_moves::SetChiMover, protocols::moves::IfMover, protocols::protein_interface_design::movers::InterfaceRecapitulationMover, protocols::protein_interface_design::movers::PlaceOnLoop, protocols::seeded_abinitio::SegmentHybridizer, protocols::simple_moves::PDBReloadMover, protocols::simple_moves::WriteSSEMover, protocols::abinitio::DomainAssembly, protocols::antibody::AntibodyModelerProtocol, protocols::legacy_sewing::LegacyAppendAssemblyMover, protocols::simple_moves::PeptideStapleMover, protocols::simple_moves::RepeatPropagationMover, protocols::protein_interface_design::movers::BestHotspotCstMover, protocols::residue_selectors::StoreResidueSubsetMover, protocols::rna::movers::RNA_LoopCloser, protocols::rosetta_scripts::SavePoseMover, protocols::seeded_abinitio::SeedFoldTree, protocols::cryst::ReportGradientsMover, protocols::ligand_docking::ga_ligand_dock::GALigandDock, protocols::ligand_docking::StartFrom, protocols::medal::MedalExchangeMover, protocols::minimization_packing::symmetry::SymPackRotamersMover, protocols::protein_interface_design::movers::LoopOver, protocols::protein_interface_design::movers::ShoveResidueMover, protocols::protein_interface_design::movers::VLB, protocols::rbsegment_relax::IdealizeHelicesMover, protocols::seeded_abinitio::CloseFold, protocols::calc_taskop_movers::ForceDisulfidesMover, protocols::cyclic_peptide::PeptideCyclizeMover, protocols::ligand_docking::Rotates, protocols::matdes::SchemePlaceMotifsMover, protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots, protocols::protein_interface_design::movers::HotspotHasherMover, protocols::star::StarAbinitio, protocols::task_operations::StoreCombinedStoredTasksMover, protocols::electron_density::ReportFSC, protocols::legacy_sewing::LegacyEnumerateAssemblyMover, protocols::legacy_sewing::LegacyGivenPathAssemblyMover, protocols::legacy_sewing::LegacyGreedyAssemblyMover, protocols::moves::NullMover, protocols::protein_interface_design::movers::BuildAlaPose, protocols::protein_interface_design::movers::RandomMutation, protocols::protein_interface_design::movers::SetAtomTree, protocols::protein_interface_design::movers::TopologyBrokerMover, protocols::simple_moves::CutChainMover, protocols::simple_moves::DumpPdb, protocols::simple_moves::LoadUnboundRotMover, protocols::simple_moves::SequenceProfileMover, protocols::simple_moves::SwitchChainOrderMover, protocols::symmetry::DetectSymmetry, protocols::vardist_solaccess::LoadVarSolDistSasaCalculatorMover, protocols::cyclic_peptide::PeptideStubMover, protocols::electron_density::ScaleMapIntensities, protocols::loop_build::LoopmodelWrapper, protocols::protein_interface_design::movers::FavorNativeResiduePreCycle, protocols::protein_interface_design::movers::PeptideStapleDesignMover, protocols::protein_interface_design::movers::PrepackMover, protocols::seeded_abinitio::CAcstGenerator, protocols::splice::RotLibOut, protocols::task_operations::StoreTaskMover, protocols::simple_moves::LoadPDBMover, protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle, protocols::protein_interface_design::movers::LoopLengthChange, protocols::protein_interface_design::movers::SetTemperatureFactor, protocols::seeded_abinitio::GrowPeptides, protocols::seeded_abinitio::SeedSetupMover, protocols::simple_moves::ChainSplitMover, protocols::simple_moves::FavorSequenceProfile, protocols::splice::RBOutMover, protocols::fldsgn::SheetRemodelConstraintGenerator, protocols::rbsegment_relax::MakeStarTopologyMover, protocols::seeded_abinitio::SwapSegment, protocols::simple_moves::AddPDBInfoMover, protocols::simple_moves::AddResidueLabelMover, protocols::simple_moves::FindConsensusSequence, protocols::legacy_sewing::LegacyAddStartnodeFragments, protocols::protein_interface_design::movers::AddChainBreak, protocols::protein_interface_design::movers::PatchdockTransform, protocols::protein_interface_design::movers::SubroutineMover, protocols::seeded_abinitio::CoordinateCst, protocols::seeded_abinitio::DefineMovableLoops, protocols::simple_moves::AlignChainMover, protocols::cutoutdomain::CutOutDomain, protocols::protein_interface_design::movers::DockAndRetrieveSidechains, protocols::relax::MiniRelax, protocols::simple_moves::AddJobPairData, protocols::ligand_docking::CompoundTranslate, protocols::protein_interface_design::movers::TaskAwareCsts, protocols::splice::RBInMover, protocols::loops::FoldTreeFromLoops, protocols::simple_moves::AddChainMover, protocols::simple_moves::ContingentAcceptMover, protocols::splice::AlignEndsMover, protocols::monte_carlo::ResetBaselineMover, protocols::simple_moves::ReportXYZ, protocols::cyclic_peptide::CreateDistanceConstraint, protocols::ligand_docking::RandomConformers, protocols::simple_moves::PSSM2BfactorMover, protocols::cyclic_peptide::CreateAngleConstraint, protocols::cyclic_peptide::CreateTorsionConstraint, protocols::ligand_docking::WriteLigandMolFile, protocols::simple_moves::VirtualRootMover, protocols::cyclic_peptide::DeclareBond, protocols::simple_moves::DeleteChainMover, protocols::simple_moves::SaveSequenceToCommentsMover, protocols::constraint_movers::ClearConstraintsMover, protocols::simple_moves::FavorSymmetricSequence, and protocols::simple_moves::ResetFoldTree.

Referenced by protocols::denovo_design::movers::BuildDeNovoBackboneMover::add_postfold_mover(), protocols::denovo_design::movers::BuildDeNovoBackboneMover::add_prefold_mover(), protocols::abinitio::ResolutionSwitcher::apply(), protocols::abinitio::AbrelaxMover::apply(), protocols::docking::DockingEnsemblePrepackProtocol::apply(), protocols::enzdes::GenerateStoredRBConfs::apply(), protocols::enzdes::ApplyRandomStoredRBConf::apply(), protocols::jd2::MSDJobDistributor::apply_parsed_protocol(), protocols::enzdes::BackboneSampler::BackboneSampler(), protocols::enzdes::DiversifyStoredRBConfs::diversify_all_confs(), protocols::relax::RelaxProtocolBase::fresh_instance(), protocols::recces::sampler::rna::MC_RNA_OneJump::MC_RNA_OneJump(), protocols::enzdes::MinimizeStoredRBConfs::rb_minimize_all_confs(), and protocols::symmetry::SymmetrySlider::very_far_away().

MoverOP protocols::moves::Mover::create ( )
virtual

References fresh_instance().

MoverOP protocols::moves::Mover::fresh_instance ( ) const
virtual

Generates a new Mover object freshly created with the default ctor.

fresh_instance is meant to return a new object of this class, created with the default constructor. This really should be a pure virtual in the base class, but adding pure virtuals to Mover would massively disrupt the code. This default implementation crashes at runtime instead of compiletime if you try to call it. If this code is causing you problems, your Mover needs to override this function. This is used by the August 08 job distributor.

Reimplemented in protocols::loop_grower::LoopGrower, protocols::rigid::RigidBodyTransMover, protocols::rigid::RigidBodyTiltMover, protocols::moves::PyMOLMover, protocols::hbnet::HBNet, protocols::simple_moves::ShearMover, protocols::cryst::MakeLatticeMover, protocols::membrane::TranslationRotationMover, protocols::simple_moves::SmallMover, protocols::moves::SwitchMover, protocols::membrane::SetMembraneCenterMover, protocols::moves::CycleMover, protocols::analysis::InterfaceAnalyzerMover, protocols::fold_from_loops::NubInitioMover, protocols::simple_moves::WaterBoxMover, protocols::cryst::DockLatticeMover, protocols::membrane::RotationMover, protocols::forge::remodel::ResidueVicinityRCG, protocols::comparative_modeling::LoopRelaxMover, protocols::docking::DockingSlideIntoContact, protocols::carbohydrates::GlycanTreeModeler, protocols::antibody::AntibodyCDRGrafter, protocols::enzdes::PredesignPerturbMover, protocols::moves::RandomMover, protocols::carbohydrates::CreateGlycanSequonMover, protocols::hybridization::FoldTreeHybridize, protocols::membrane::SetMembraneNormalMover, protocols::calc_taskop_movers::CreateSequenceMotifMover, protocols::simple_moves::ClassicFragmentMover, protocols::carbohydrates::SimpleGlycosylateMover, protocols::carbohydrates::GlycanTreeSampler, protocols::membrane::AddMembraneMover, protocols::moves::TrialMover, protocols::sewing::movers::LigandBindingAssemblyMover, protocols::carbohydrates::LinkageConformerMover, protocols::cryst::MakeLayerMover, protocols::rna::movers::RNAThreadAndMinimizeMover, protocols::antibody::constraints::CDRDihedralConstraintMover, protocols::forge::remodel::RemodelLoopMover, protocols::ligand_docking::LigandDockMain, protocols::forge::components::VarLengthBuild, protocols::minimization_packing::PackRotamersMover, protocols::moves::SequenceMover, protocols::cyclic_peptide::CrosslinkerMover, protocols::minimization_packing::MinMover, protocols::sewing::hashing::AlignmentFileGeneratorMover, protocols::monte_carlo::GenericMonteCarloMover, protocols::forge::remodel::RemodelMover, protocols::simple_moves::ChangeAndResetFoldTreeMover, protocols::carbohydrates::GlycanTreeMinMover, protocols::cryst::CrystRMS, protocols::fldsgn::BluePrintBDR, protocols::hybridization::HybridizeProtocol, protocols::fold_from_loops::movers::SplitAndMixPoseMover, protocols::comparative_modeling::ThreadingMover, protocols::flxbb::FlxbbDesign, protocols::forge::components::BDR, protocols::fldsgn::potentials::SetSecStructEnergies, protocols::legacy_sewing::LegacyAssemblyConstraintsMover, protocols::sewing::movers::AppendAssemblyMover, protocols::rosetta_scripts::ParsedProtocol, protocols::antibody::design::AntibodyDesignMover, protocols::docking::DockingProtocol, protocols::grafting::AnchoredGraftMover, protocols::sewing::movers::AssemblyMover, protocols::simple_moves::BBDihedralSamplerMover, protocols::membrane::TranslationMover, protocols::loops::loop_closure::ccd::CCDLoopClosureMover, protocols::backrub::BackrubProtocol, protocols::simple_moves::SimpleThreadingMover, protocols::minimization_packing::MinPackMover, protocols::simple_moves::PeriodicBoxMover, protocols::fldsgn::CircularPermutation, protocols::fold_from_loops::movers::NubInitioLoopClosureMover, protocols::minimization_packing::RotamerTrialsMinMover, protocols::nonlocal::SingleFragmentMover, protocols::hybridization::CartesianHybridize, protocols::membrane::symmetry::SymmetricAddMembraneMover, protocols::membrane::TransformIntoMembraneMover, protocols::simple_moves::ConvertRealToVirtualMover, protocols::grafting::CCDEndsGraftMover, protocols::simple_moves::ConvertVirtualToRealMover, protocols::analysis::GlycanInfoMover, protocols::ncbb::oop::OopCreatorMover, protocols::analysis::simple_metrics::RunSimpleMetricsMover, protocols::fldsgn::potentials::SetAACompositionPotential, protocols::antibody::AntibodyNumberingConverterMover, protocols::hybridization::BackboneTorsionPerturbation, protocols::hybridization::BackboneTorsionSampler, protocols::loophash::LoopHashDiversifier, protocols::simple_moves::CopyRotamerMover, protocols::denovo_design::movers::FastDesign, protocols::docking::membrane::MPDockingMover, protocols::electron_density::BfactorFittingMover, protocols::evolution::EvolutionaryDynamicsMover, protocols::ligand_docking::ProtLigEnsemble, protocols::minimization_packing::PertMinMover, protocols::protein_interface_design::movers::PlaceStubMover, protocols::membrane::FlipMover, protocols::farnesyl::InstallFarnesylMover, protocols::recces::scratch::ThermalMinimizer, protocols::denovo_design::movers::FoldTreeFromFoldGraphMover, protocols::fold_from_loops::movers::DisplayPoseLabelsMover, protocols::monte_carlo::GenericSimulatedAnnealer, protocols::moves::MonteCarloUtil, protocols::recces::scratch::ThermalSamplingMover, protocols::helical_bundle::MakeBundleHelix, protocols::chemically_conjugated_docking::UBQ_GTPaseMover, protocols::farnesyl::SampleFarnesylMover, protocols::ligand_docking::HighResEnsemble, protocols::abinitio::abscript::AbscriptMover, protocols::canonical_sampling::MetropolisHastingsMover, protocols::pose_creation::MergePDBMover, protocols::cryst::UpdateCrystInfo, protocols::membrane::SetMembranePositionMover, protocols::backbone_moves::local_backbone_mover::LocalBackboneMover, protocols::constraint_movers::CstInfoMover, protocols::loop_grower::FragmentExtension, protocols::membrane::MPLipidAccessibility, protocols::membrane::visualize::VisualizeMembraneMover, protocols::simple_moves::DeleteChainsMover, protocols::splice::Splice, protocols::canonical_sampling::SidechainMetropolisHastingsMover, protocols::denovo_design::movers::DeclareStructureDataCovalentBondMover, protocols::grafting::simple_movers::KeepRegionMover, protocols::loophash::LoopHashLibrary, protocols::membrane::TiltMover, protocols::ncbb::oop::OopDockDesignProtocol, protocols::forge::constraints::InverseRotamersRCG, protocols::membrane::AddMPLigandMover, protocols::membrane::SpinAroundPartnerMover, protocols::minimization_packing::DisulfideOptimizationMover, protocols::ncbb::NcbbDockDesignProtocol, protocols::simple_moves::DumpSingleResidueRotamers, protocols::simple_moves::ReportEffectivePKA, protocols::cyclic_peptide::SymmetricCycpepAlign, protocols::forge::remodel::RemodelGlobalFrame, protocols::hybridization::CartesianSampler, protocols::membrane::MPQuickRelaxMover, protocols::minimization_packing::RotamerTrialsMover, protocols::aa_composition::AddHelixSequenceConstraintsMover, protocols::helical_bundle::BundleGridSampler, protocols::membrane::HelixFromSequence, protocols::simple_moves::CoupledMover, protocols::helical_bundle::PerturbBundle, protocols::helical_bundle::PerturbBundleHelix, protocols::protein_interface_design::movers::TryRotamers, protocols::rna::movers::RNAIdealizeMover, protocols::simple_moves::PoseFromPoseResourceMover, protocols::surface_docking::SurfaceDockingProtocol, protocols::antibody::design::MutateFrameworkForCluster, protocols::denovo_design::movers::RotateSegmentMover, protocols::helical_bundle::MakeBundle, protocols::membrane::benchmark::SampleTiltAngles, protocols::minimization_packing::RepackSidechainsMover, protocols::normalmode::NormalModeMinimizer, protocols::rigid::UniformRigidBodyCM, protocols::carbohydrates::RingPlaneFlipMover, protocols::flxbb::InterlockAroma, protocols::minimization_packing::BoltzmannRotamerMover, protocols::simple_moves::bin_transitions::InitializeByBins, protocols::simple_moves::bin_transitions::PerturbByBins, protocols::simple_moves::sidechain_moves::SidechainMCMover, protocols::simple_moves::StorePoseSnapshot, protocols::symmetric_docking::membrane::MPSymDockMover, protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMover, protocols::canonical_sampling::ParallelTempering, protocols::environment::CoMTrackerCM, protocols::hbnet::HBNetStapleInterface, protocols::ligand_docking::Rotate, protocols::moves::FilterReportAsPoseExtraScoresMover, protocols::relax::membrane::MPFastRelaxMover, protocols::denovo_design::movers::BridgeChainsMover, protocols::denovo_design::movers::SealFoldTreeMover, protocols::features::ReportToDB, protocols::membrane::visualize::VisualizeEmbeddingMover, protocols::abinitio::abscript::ConstraintPreparer, protocols::docking::membrane::MPDockingSetupMover, protocols::docking::membrane::MPFindInterfaceMover, protocols::loops::loop_mover::refine::ShearMinCCDTrial, protocols::mean_field::GenMeanFieldMover, protocols::dna::DnaInterfacePacker, protocols::membrane::OptimizeMembranePositionMover, protocols::simple_moves::RingConformationMover, protocols::simple_moves::Tumble, protocols::simple_moves::WriteFiltersToPose, protocols::abinitio::abscript::FragmentJumpCM, protocols::matdes::MatDesGreedyOptMutationMover, protocols::antibody::snugdock::SnugDock, protocols::carbohydrates::IdealizeAnomericHydrogens, protocols::match::MatcherMover, protocols::relax::membrane::MPRangeRelaxMover, protocols::rotamer_recovery::RotamerRecoveryMover, protocols::denovo_design::movers::BuildDeNovoBackboneMover, protocols::docking::membrane::QuickRelaxPartnersSeparately, protocols::helical_bundle::BackboneGridSampler, protocols::pose_creation::ExtendedPoseMover, protocols::denovo_design::movers::AddSegmentDataMover, protocols::denovo_design::movers::MakeAsymmetricStructureDataMover, protocols::features::InterfaceDdGMover, protocols::forge::remodel::RemodelAccumulator, protocols::matdes::SymDofMover, protocols::membrane::MembranePositionFromTopologyMover, protocols::canonical_sampling::MetricRecorder, protocols::denovo_design::movers::AlignResiduesMover, protocols::denovo_design::movers::SetResidueAliasMover, protocols::floppy_tail::FloppyTailMover, protocols::surface_docking::CentroidRelaxMover, protocols::coupled_moves::CoupledMovesProtocol, protocols::electron_density::VoxelSpacingRefinementMover, protocols::fldsgn::MatchResiduesMover, protocols::forge::remodel::RemodelDesignMover, protocols::hydrate::Hydrate, protocols::ligand_docking::HighResDocker, protocols::monte_carlo::MonteCarloReset, protocols::monte_carlo::MonteCarloTest, protocols::membrane::MPMutateRelaxMover, protocols::antibody::snugdock::SnugDockProtocol, protocols::canonical_sampling::DbTrajectoryRecorder, protocols::design_opt::GreedyOptMutationMover, protocols::environment::ScriptCM, protocols::forge::constraints::InvrotTreeRCG, protocols::membrane::AddMembraneSpanConstraint, protocols::membrane::AddMembraneSpanTermZConstraint, protocols::simple_moves::ConstrainToIdealMover, protocols::simple_moves::ReturnSidechainMover, protocols::backrub::BackrubSidechainMover, protocols::docking::EllipsoidalRandomizationMover, protocols::grafting::simple_movers::ReplaceRegionMover, protocols::ligand_docking::TransformEnsemble, protocols::moves::FilterReporterMover, protocols::normalmode::NormalModeRelaxMover, protocols::pose_creation::MakeJunctionsMover, protocols::protein_interface_design::movers::LoopRemodel, protocols::features::TrajectoryReportToDB, protocols::forge::constraints::RemoveRemodelCsts, protocols::loops::loop_mover::refine::SmallMinCCDTrial, protocols::protein_interface_design::movers::DisulfideMover, protocols::backrub::BackrubMover, protocols::enzdes::EnzRepackMinimize, protocols::enzymatic_movers::EnzymaticMover, protocols::ligand_docking::Transform, protocols::loops::loop_mover::refine::RepackTrial, protocols::monte_carlo::MonteCarloRecover, protocols::protein_interface_design::movers::LoopMoverFromCommandLine, protocols::protein_interface_design::movers::PlaceSimultaneouslyMover, protocols::simple_ddg::ddG, protocols::enzdes::PackRotamersMoverPartGreedy, protocols::fold_from_loops::movers::AlignByResidueSelectorMover, protocols::ligand_docking::Translate, protocols::membrane::benchmark::MakeCanonicalHelix, protocols::membrane::OptimizeProteinEmbeddingMover, protocols::simple_moves::SetTorsion, protocols::splice::TailSegmentMover, protocols::calc_taskop_movers::ConsensusDesignMover, protocols::constraint_generator::RemoveConstraints, protocols::forge::remodel::RemodelLigandHandler, protocols::idealize::IdealizeMover, protocols::loophash::Mover_LoopHashRefine, protocols::moves::IteratedConvergenceMover, protocols::pb_potential::SetupPoissonBoltzmannPotential, protocols::abinitio::AbrelaxMover, protocols::canonical_sampling::HamiltonianExchange, protocols::dna::DnaInterfaceMultiStateDesign, protocols::ncbb::SecStructFinder, protocols::pose_creation::MakePolyXMover, protocols::splice::SpliceOutTail, protocols::canonical_sampling::SimulatedTempering, protocols::grafting::simple_movers::DeleteRegionMover, protocols::md::CartesianMD, protocols::minimization_packing::symmetry::TaskAwareSymMinMover, protocols::simple_moves::MutateResidue, protocols::analysis::LoopAnalyzerMover, protocols::constraint_generator::AddConstraints, protocols::denovo_design::movers::ExtendChainMover, protocols::forge::constraints::NtoCConstraintGenerator, protocols::loophash::LoopHashRelaxProtocol, protocols::protein_interface_design::movers::SaveAndRetrieveSidechains, protocols::rigid::UniformRigidBodyMover, protocols::simple_moves::asym_fold_and_dock::AsymFoldandDockRbTrialMover, protocols::splice::SpliceOut, protocols::aa_composition::AddCompositionConstraintMover, protocols::aa_composition::AddMHCEpitopeConstraintMover, protocols::aa_composition::AddNetChargeConstraintMover, protocols::aa_composition::ClearCompositionConstraintsMover, protocols::dna::DesignProteinBackboneAroundDNA, protocols::dna::SeparateDnaFromNonDna, protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMover, protocols::generalized_kinematic_closure::GeneralizedKIC, protocols::nonlocal::HelixRotate, protocols::rosetta_scripts::MultiplePoseMover, protocols::simple_moves::ShortBackrubMover, protocols::splice::SpliceInTail, protocols::stepwise::monte_carlo::mover::AddMover, protocols::antibody::design::AntibodyDesignProtocol, protocols::canonical_sampling::PDBTrajectoryRecorder, protocols::constraint_movers::ResidueTypeConstraintMover, protocols::cyclic_peptide::TryDisulfPermutations, protocols::enzymatic_movers::GlycosyltransferaseMover, protocols::evolution::NucleotideMutation, protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMover, protocols::loophash::LoopHashMoverWrapper, protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer, protocols::moves::DsspMover, protocols::nonlocal::SheetTranslate, protocols::protein_interface_design::movers::DockWithHotspotMover, protocols::protein_interface_design::movers::LoopFinder, protocols::relax::AtomCoordinateCstMover, protocols::simple_moves::SetupMetalsMover, protocols::splice::SpliceIn, protocols::stepwise::monte_carlo::mover::DeleteMover, protocols::struct_fragment::StructFragmentMover, protocols::dna::DnaInterfaceMinMover, protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMover, protocols::protein_interface_design::movers::MapHotspot, protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover, protocols::protein_interface_design::movers::RepackMinimize, protocols::simple_moves::MembraneTopology, protocols::simple_moves::SwitchResidueTypeSetMover, protocols::splice::SpliceInAntibody, protocols::anchored_design::AnchoredDesignMover, protocols::fold_from_loops::movers::MoveMapFactoryToNamedMoveMapMover, protocols::legacy_sewing::LegacyRepeatAssemblyMover, protocols::moves::RepeatMover, protocols::protein_interface_design::movers::DesignMinimizeHbonds, protocols::protein_interface_design::movers::PlacementAuctionMover, protocols::rosetta_scripts::AdditionalOutputWrapper, protocols::simple_moves::RandomTorsionMover, protocols::simple_moves::ScoreMover, protocols::enzdes::AddOrRemoveMatchCsts, protocols::fold_from_loops::movers::SavePDBInfoMover, protocols::ligand_docking::MinimizeBackbone, protocols::minimization_packing::symmetry::SymMinMover, protocols::minimization_packing::TaskAwareMinMover, protocols::rigid::RollMover, protocols::splice::SpliceOutAntibody, protocols::contact_map::ContactMap, protocols::motifs::MotifDnaPacker, protocols::ncbb::SecStructMinimizeMover, protocols::protein_interface_design::movers::BackrubDDMover, protocols::relax::RelaxProtocolBase, protocols::rosetta_scripts::MultipleOutputWrapper, protocols::simple_moves::MissingDensityToJumpMover, protocols::simple_moves::SuperimposeMover, protocols::enzdes::BackboneSampler, protocols::frag_picker::nonlocal::NonlocalFrags, protocols::ligand_docking::FinalMinimizer, protocols::canonical_sampling::SilentTrajectoryRecorder, protocols::constraint_movers::ConstraintSetMover, protocols::ligand_docking::SlideTogether, protocols::loophash::FastGapMover, protocols::medal::MedalMover, protocols::moves::CyclicMover, protocols::stepwise::monte_carlo::mover::ResampleMover, protocols::surface_docking::FullatomRelaxMover, protocols::task_operations::StoreCompoundTaskMover, protocols::ligand_docking::InterfaceScoreCalculator, protocols::matdes::ExtractSubposeMover, protocols::simple_moves::ModifyVariantTypeMover, protocols::simple_moves::RandomOmegaFlipMover, protocols::stepwise::monte_carlo::mover::FromScratchMover, protocols::helical_bundle::FitSimpleHelix, protocols::hybridization::MRMover, protocols::pose_creation::MergePDBatOverlapMover, protocols::protein_interface_design::movers::PlacementMinimizationMover, protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover, protocols::protein_interface_design::movers::SpinMover, protocols::cyclic_peptide::FlipChiralityMover, protocols::legacy_sewing::LegacyMonteCarloAssemblyMover, protocols::moves::IfMover, protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover, protocols::simple_moves::asym_fold_and_dock::AsymFoldandDockMoveRbJumpMover, protocols::simple_moves::sidechain_moves::SetChiMover, protocols::simple_moves::WriteSSEMover, protocols::ligand_docking::ComputeLigandRDF, protocols::ligand_docking::GrowLigand, protocols::protein_interface_design::movers::SetupHotspotConstraintsMover, protocols::simple_moves::MSDMover, protocols::constraint_movers::AddConstraintsToCurrentConformationMover, protocols::legacy_sewing::LegacyAppendAssemblyMover, protocols::ligand_docking::AddHydrogens, protocols::ligand_docking::LigandDesign, protocols::moves::StructureRestrictor, protocols::protein_interface_design::movers::BestHotspotCstMover, protocols::medal::MedalExchangeMover, protocols::protein_interface_design::movers::InterfaceRecapitulationMover, protocols::protein_interface_design::movers::LoopOver, protocols::protein_interface_design::movers::PlaceOnLoop, protocols::seeded_abinitio::SegmentHybridizer, protocols::simple_moves::PDBReloadMover, protocols::abinitio::DomainAssembly, protocols::protein_interface_design::movers::HotspotHasherMover, protocols::residue_selectors::StoreResidueSubsetMover, protocols::rosetta_scripts::SavePoseMover, protocols::seeded_abinitio::SeedFoldTree, protocols::star::StarAbinitio, protocols::legacy_sewing::LegacyEnumerateAssemblyMover, protocols::legacy_sewing::LegacyGivenPathAssemblyMover, protocols::legacy_sewing::LegacyGreedyAssemblyMover, protocols::ligand_docking::ga_ligand_dock::GALigandDock, protocols::ligand_docking::StartFrom, protocols::minimization_packing::symmetry::SymPackRotamersMover, protocols::protein_interface_design::movers::ShoveResidueMover, protocols::protein_interface_design::movers::VLB, protocols::seeded_abinitio::CloseFold, protocols::simple_moves::DumpPdb, protocols::calc_taskop_movers::ForceDisulfidesMover, protocols::cyclic_peptide::PeptideCyclizeMover, protocols::ligand_docking::Rotates, protocols::matdes::SchemePlaceMotifsMover, protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots, protocols::protein_interface_design::movers::FavorNativeResiduePreCycle, protocols::task_operations::StoreCombinedStoredTasksMover, protocols::electron_density::ReportFSC, protocols::moves::NullMover, protocols::protein_interface_design::movers::BuildAlaPose, protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle, protocols::protein_interface_design::movers::PeptideStapleDesignMover, protocols::protein_interface_design::movers::RandomMutation, protocols::protein_interface_design::movers::SetAtomTree, protocols::protein_interface_design::movers::TopologyBrokerMover, protocols::simple_moves::CutChainMover, protocols::simple_moves::SequenceProfileMover, protocols::simple_moves::SwitchChainOrderMover, protocols::cyclic_peptide::PeptideStubMover, protocols::electron_density::ScaleMapIntensities, protocols::protein_interface_design::movers::PrepackMover, protocols::seeded_abinitio::CAcstGenerator, protocols::splice::RotLibOut, protocols::task_operations::StoreTaskMover, protocols::legacy_sewing::LegacyAddStartnodeFragments, protocols::simple_moves::LoadPDBMover, protocols::protein_interface_design::movers::LoopLengthChange, protocols::protein_interface_design::movers::SetTemperatureFactor, protocols::seeded_abinitio::GrowPeptides, protocols::seeded_abinitio::SeedSetupMover, protocols::simple_moves::ChainSplitMover, protocols::simple_moves::FavorSequenceProfile, protocols::simple_moves::LoadUnboundRotMover, protocols::splice::RBOutMover, protocols::cutoutdomain::CutOutDomain, protocols::seeded_abinitio::SwapSegment, protocols::simple_moves::AddPDBInfoMover, protocols::simple_moves::AddResidueLabelMover, protocols::simple_moves::FindConsensusSequence, protocols::protein_interface_design::movers::AddChainBreak, protocols::protein_interface_design::movers::PatchdockTransform, protocols::protein_interface_design::movers::SubroutineMover, protocols::seeded_abinitio::CoordinateCst, protocols::seeded_abinitio::DefineMovableLoops, protocols::simple_moves::AlignChainMover, protocols::protein_interface_design::movers::DockAndRetrieveSidechains, protocols::simple_moves::AddJobPairData, protocols::ligand_docking::CompoundTranslate, protocols::protein_interface_design::movers::TaskAwareCsts, protocols::splice::RBInMover, protocols::loops::FoldTreeFromLoops, protocols::simple_moves::AddChainMover, protocols::simple_moves::ContingentAcceptMover, protocols::splice::AlignEndsMover, protocols::monte_carlo::ResetBaselineMover, protocols::simple_moves::ReportXYZ, protocols::cyclic_peptide::CreateDistanceConstraint, protocols::ligand_docking::RandomConformers, protocols::simple_moves::PSSM2BfactorMover, protocols::cyclic_peptide::CreateAngleConstraint, protocols::cyclic_peptide::CreateTorsionConstraint, protocols::ligand_docking::WriteLigandMolFile, protocols::simple_moves::VirtualRootMover, protocols::cyclic_peptide::DeclareBond, protocols::simple_moves::DeleteChainMover, protocols::simple_moves::SaveSequenceToCommentsMover, protocols::constraint_movers::ClearConstraintsMover, and protocols::simple_moves::ResetFoldTree.

Referenced by create().

core::pose::PoseOP protocols::moves::Mover::get_additional_output ( )
virtual

Mechanism by which a mover may return multiple output poses from a single input pose.

fpd

Mechanism by which a mover may return multiple output poses from a single input pose. After apply is called, calling this function will return subsequent output poses. NULL is returned if the mover has no more output poses remaining. The base class implementation returns NULL always; multi-output movers must override this. RosettaScripts uses this interface to produce a 'branched' protocol.

Reimplemented in protocols::hbnet::HBNet, protocols::motif_grafting::movers::MotifGraftMover, protocols::pose_length_moves::NearNativeLoopCloser, protocols::rna::denovo::RNA_FragmentMonteCarlo, protocols::indexed_structure_store::movers::DirectSegmentLookupMover, protocols::pose_creation::MergePDBMover, protocols::pose_creation::MakeJunctionsMover, protocols::rosetta_scripts::ParsedProtocol, protocols::rosetta_scripts::MultiplePoseMover, protocols::rosetta_scripts::AdditionalOutputWrapper, protocols::rosetta_scripts::MultipleOutputWrapper, protocols::moves::IfMover, protocols::pose_length_moves::InsertResMover, protocols::loophash::LoopHashMoverWrapper, and protocols::ligand_docking::ga_ligand_dock::GALigandDock.

Referenced by protocols::monte_carlo::GenericSimulatedAnnealer::apply().

jobdist::BasicJobCOP protocols::moves::Mover::get_current_job ( ) const
std::string protocols::moves::Mover::get_current_tag ( ) const
inline

A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

References current_tag_.

Referenced by protocols::comparative_modeling::LoopRelaxThreadingMover::apply(), protocols::hybridization::MRMover::apply(), protocols::abinitio::AbrelaxMover::apply(), protocols::loops::loop_mover::IndependentLoopMover::apply(), protocols::abinitio::KinematicAbinitio::apply(), protocols::relax::ClassicRelax::apply(), protocols::comparative_modeling::LoopRelaxMover::apply(), protocols::abinitio::ConstraintFragmentSampler::apply(), protocols::abinitio::FragmentSampler::apply(), protocols::relax::FastRelax::apply(), protocols::abinitio::ClassicAbinitio::apply(), protocols::abinitio::abscript::AbscriptLoopCloserCM::attempt_ccd(), protocols::abinitio::MembraneAbinitio::checkpoint(), protocols::abinitio::FragmentSampler::checkpointed_cycle_block(), protocols::abinitio::FragmentSampler::do_stage3_cycles(), protocols::abinitio::ClassicAbinitio::do_stage3_cycles(), protocols::abinitio::FragmentSampler::do_stage4_cycles(), protocols::abinitio::ClassicAbinitio::do_stage4_cycles(), protocols::abinitio::KinematicAbinitio::dump_jump_log(), protocols::abinitio::AbrelaxApplication::fold(), protocols::loop_build::LoopMover_SlidingWindow::model_loop(), protocols::moves::operator<<(), protocols::abinitio::Protocol::output_debug_structure(), protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure::output_debug_structure(), protocols::relax::RelaxProtocolBase::output_debug_structure(), protocols::abinitio::MembraneAbinitio::output_debug_structure(), protocols::abinitio::ClassicAbinitio::output_debug_structure(), protocols::abinitio::MembraneAbinitio::recover_checkpoint(), protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure::select_final_loop(), protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure::select_final_loop(), and show().

PoseCOP protocols::moves::Mover::get_input_pose ( ) const
MoverStatus protocols::moves::Mover::get_last_move_status ( ) const

end parser interface, start Job Distributor interface/////////////

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say "that run was no good, skip it" then use the protected last_move_status(MoverStatus) to change the value that this function will return.

start Job Distributor interface//////////////////////////////////

used by job distributor to get status

References last_status_.

Referenced by protocols::loop_build::LoopBuildMover::apply(), protocols::protein_interface_design::movers::VLB::apply(), protocols::environment::EnvMover::apply(), protocols::splice::SpliceOutAntibody::apply(), protocols::abinitio::AbrelaxMover::apply(), protocols::sewing::movers::LigandBindingAssemblyMover::apply(), protocols::generalized_kinematic_closure::GeneralizedKIC::apply(), protocols::protein_interface_design::movers::LoopRemodel::apply(), protocols::rosetta_scripts::ParsedProtocol::apply(), protocols::abinitio::KinematicAbinitio::apply(), protocols::moves::RandomMover::apply(), protocols::abinitio::JumpingFoldConstraintsWrapper::apply(), protocols::moves::CycleMover::apply(), protocols::forge::components::VarLengthBuild::apply(), protocols::monte_carlo::GenericSimulatedAnnealer::apply_mover(), protocols::protein_interface_design::movers::PlaceStubMover::final_cleanup(), protocols::abinitio::AbrelaxApplication::fold(), and protocols::protein_interface_design::movers::PlaceOnLoop::minimize_toward_stub().

virtual std::string protocols::moves::Mover::get_name ( ) const
pure virtual

Each derived class must specify its name. The class name.

Implemented in protocols::rigid::RigidBodyDofSeqPerturbMover, protocols::rigid::RigidBodyDofPerturbMover, protocols::rigid::RigidBodyDofRandomTransMover, protocols::rigid::RigidBodyDofSeqTransMover, protocols::rigid::RigidBodyDofTransMover, protocols::rigid::RigidBodyDofSeqRandomizeMover, protocols::rigid::RigidBodyDofRandomizeMover, protocols::hbnet::HBNet, protocols::rigid::UniformSphereTransMover, protocols::forge::remodel::RemodelMover, protocols::loop_grower::LoopGrower, protocols::rigid::RigidBodyTransMover, protocols::frags::TorsionFragmentMover, protocols::analysis::InterfaceAnalyzerMover, protocols::generalized_kinematic_closure::GeneralizedKIC, protocols::forge::components::VarLengthBuild, protocols::rigid::RigidBodyTiltMover, protocols::rbsegment_relax::StrandTwistingMover, protocols::motif_grafting::movers::MotifGraftMover, protocols::moves::PyMOLMover, protocols::rigid::RigidBodyDeterministicSpinMover, protocols::backrub::BackrubMover, protocols::forge::remodel::RemodelLoopMover, protocols::rigid::RigidBodySpinMover, protocols::rbsegment_relax::GaussianRBSegmentMover, protocols::simple_moves::ShearMover, protocols::cryst::MakeLatticeMover, protocols::monte_carlo::GenericMonteCarloMover, protocols::denovo_design::movers::SetPoseSecstructFromStructureDataMover, protocols::membrane::TranslationRotationMover, protocols::flxbb::FlxbbDesignPack, protocols::cluster::AssignToClustersMover, protocols::rigid::RigidBodyRandomizeMover, protocols::forge::components::BDR, protocols::docking::SlideIntoContact, protocols::simple_moves::LoggedFragmentMover, protocols::rbsegment_relax::SequenceShiftMover, protocols::cluster::ClusterPhilStyle_PoseReporter, protocols::cryst::SetRefinementOptionsMover, protocols::simple_moves::SmallMover, protocols::electron_density::DockIntoDensityMover, protocols::enzdes::UpdateEnzdesHeaderMover, protocols::rigid::RigidBodyPerturbNoCenterMover, protocols::loop_modeling::LoopProtocol, protocols::cluster::ClusterPhilStyle_Loop, protocols::moves::SwitchMover, protocols::anchored_design::AnchoredRefineMover, protocols::helical_bundle::BackboneGridSampler, protocols::simple_moves::sidechain_moves::SidechainMover, protocols::canonical_sampling::MetropolisHastingsMover, protocols::cryst::TagPoseWithRefinementStatsMover, protocols::LoopRefine, protocols::cluster::ClusterPhilStyle, protocols::docking::FaDockingSlideIntoContact, protocols::loops::loop_closure::ccd::CCDLoopClosureMover, protocols::antibody::design::AntibodyDesignMover, protocols::fldsgn::BluePrintBDR, protocols::moves::CycleMover, protocols::fold_from_loops::NubInitioMover, protocols::helical_bundle::BundleGridSampler, protocols::cryst::UpdateSolventMover, protocols::simple_moves::BBG8T3AMover, protocols::enzdes::RepackLigandSiteWithoutLigandMover, protocols::membrane::RotationMover, protocols::features::ReportToDB, protocols::simple_moves::WaterBoxMover, protocols::splice::Splice, protocols::cryst::DockLatticeMover, protocols::denovo_design::DisulfidizeMover, protocols::forge::remodel::ResidueVicinityRCG, protocols::backrub::BackrubSidechainMover, protocols::docking::DockingProtocol, protocols::antibody_legacy::LoopRlxMover, protocols::minimization_packing::GreenPacker, protocols::docking::DockingSlideIntoContact, protocols::membrane::SetMembraneCenterMover, protocols::rigid::RigidBodyPerturbRandomJumpMover, protocols::canonical_sampling::FixedTemperatureController, protocols::helical_bundle::MakeBundle, protocols::flxbb::FlxbbDesign, protocols::symmetry::ExtractAsymmetricPoseMover, protocols::canonical_sampling::MetricRecorder, protocols::comparative_modeling::LoopRelaxMover, protocols::rbsegment_relax::HelicalGaussianMover, protocols::abinitio::JumpingFoldConstraintsWrapper, protocols::grafting::AnchoredGraftMover, protocols::carbohydrates::GlycanTreeModeler, protocols::cluster::ClusterBase, protocols::moves::RandomMover, protocols::enzdes::DiversifyStoredRBConfs, protocols::cryst::FitBfactorsMover, protocols::antibody::AntibodyCDRGrafter, protocols::anchored_design::AnchoredPerturbMover, protocols::carbohydrates::CreateGlycanSequonMover, protocols::enzdes::PredesignPerturbMover, protocols::minimization_packing::EnergyCutRotamerTrialsMinMover, protocols::minimization_packing::EnergyCutRotamerTrialsMover, protocols::moves::RampingMover, protocols::rigid::RigidBodyPerturbMover, protocols::simple_moves::sidechain_moves::SidechainMCMover, protocols::calc_taskop_movers::CreateSequenceMotifMover, protocols::forge::remodel::GenericRemodelConstraintGenerator, protocols::helical_bundle::FitSimpleHelix, protocols::membrane::AddMembraneMover, protocols::antibody_legacy::CloseOneMover, protocols::carbohydrates::GlycanTreeSampler, protocols::helical_bundle::MakeBundleHelix, protocols::symmetric_docking::SymDockProtocol, protocols::carbohydrates::SimpleGlycosylateMover, protocols::enzdes::MinimizeStoredRBConfs, protocols::carbohydrates::LinkageConformerMover, protocols::symmetry::ExtractAsymmetricUnitMover, protocols::cryst::LoadDensityMapMover, protocols::cryst::MakeLayerMover, protocols::abinitio::ClassicAbinitio, protocols::canonical_sampling::HamiltonianExchange, protocols::relax::FastRelax, protocols::simple_moves::ClassicFragmentMover, protocols::moves::SequenceMover, protocols::fldsgn::potentials::SetSecStructEnergies, protocols::legacy_sewing::LegacyAssemblyConstraintsMover, protocols::abinitio::MembraneAbinitio, protocols::membrane::SetMembraneNormalMover, protocols::hybridization::FoldTreeHybridize, protocols::moves::TrialMover, protocols::fldsgn::CircularPermutation, protocols::denovo_design::movers::BuildDeNovoBackboneMover, protocols::loop_modeler::LoopModeler, protocols::enzdes::ApplyRandomStoredRBConf, protocols::monte_carlo::GenericSimulatedAnnealer, protocols::abinitio::FragmentSampler, protocols::antibody::constraints::CDRDihedralConstraintMover, protocols::hybridization::HybridizeProtocol, protocols::canonical_sampling::ParallelTempering, protocols::simple_moves::CoupledMover, protocols::helical_bundle::PerturbBundle, protocols::simple_moves::bin_transitions::PerturbByBins, protocols::evolution::EvolutionaryDynamicsMover, protocols::matdes::MatDesGreedyOptMutationMover, protocols::simple_moves::SetTorsion, protocols::cryst::RecomputeDensityMapMover, protocols::cryst::CrystRMS, protocols::ligand_docking::LigandDockMain, protocols::rosetta_scripts::ParsedProtocol, protocols::pose_length_moves::NearNativeLoopCloser, protocols::antibody_legacy::GraftOneMover, protocols::simple_moves::ChangeAndResetFoldTreeMover, protocols::cluster::EnsembleConstraints_Simple, protocols::docking::DockingInitialPerturbation, protocols::docking::membrane::MPDockingMover, protocols::membrane::FlipMover, protocols::membrane::RandomPositionTranslationMover, protocols::simple_moves::UniformTranslationMover, protocols::symmetry::SetupNCSMover, protocols::loophash::LoopHashDiversifier, protocols::simple_moves::BBGaussianMover, protocols::canonical_sampling::SimulatedTempering, protocols::idealize::IdealizeMover, protocols::loop_modeling::LoopMover, protocols::membrane::symmetry::SymmetricAddMembraneMover, protocols::membrane::TransformIntoMembraneMover, protocols::minimization_packing::MinPackMover, protocols::minimization_packing::BoltzmannRotamerMover, protocols::rna::movers::RNAThreadAndMinimizeMover, protocols::membrane::TranslationMover, protocols::minimization_packing::MinMover, protocols::simple_moves::CopyRotamerMover, protocols::enzdes::GenerateStoredRBConfs, protocols::helical_bundle::PerturbBundleHelix, protocols::loops::loop_mover::refine::LoopMover_Refine_CCD, protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover, protocols::antibody::design::AntibodyDesignProtocol, protocols::dna::DnaInterfacePacker, protocols::rna::movers::ErraserMinimizerMover, protocols::rotamer_recovery::RotamerRecoveryMover, protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler, protocols::denovo_design::movers::BridgeChainsMover, protocols::fldsgn::potentials::SetAACompositionPotential, protocols::loop_grower::SheetSampler, protocols::normalmode::NormalModeRelaxMover, protocols::simple_moves::MutateResidue, protocols::antibody::constraints::ParatopeEpitopeSiteConstraintMover, protocols::contact_map::ContactMap, protocols::fold_from_loops::movers::SplitAndMixPoseMover, protocols::recces::sampler::rna::MC_RNA_Suite, protocols::symmetry::FaSymDockingSlideTogether, protocols::backrub::BackrubProtocol, protocols::nonlocal::SingleFragmentMover, protocols::abinitio::ConstraintFragmentSampler, protocols::legacy_sewing::LegacyRepeatAssemblyMover, protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD, protocols::ncbb::SecStructMinimizeMover, protocols::docking::membrane::MPDockingSetupMover, protocols::protein_interface_design::movers::PlaceStubMover, protocols::simple_moves::PeriodicBoxMover, protocols::carbohydrates::GlycanTreeMinMover, protocols::comparative_modeling::ThreadingMover, protocols::design_opt::GreedyOptMutationMover, protocols::ligand_docking::ProtLigEnsemble, protocols::recces::scratch::ThermalSamplingMover, protocols::kinematic_closure::KicMover, protocols::hbnet::HBNetStapleInterface, protocols::loop_modeling::LoopBuilder, protocols::cluster::EnsembleConstraints, protocols::loop_build::LoopMover_SlidingWindow, protocols::md::CartesianMD, protocols::forge::constraints::InverseRotamersRCG, protocols::membrane::visualize::VisualizeMembraneMover, protocols::coupled_moves::CoupledMovesProtocol, protocols::cyclic_peptide::CrosslinkerMover, protocols::docking::DockingHighResLegacy, protocols::simple_moves::sidechain_moves::SidechainMoverBase, protocols::docking::DockingHighRes, protocols::simple_moves::SimpleThreadingMover, protocols::abinitio::FoldConstraints, protocols::docking::TemperedDocking, protocols::legacy_sewing::LegacyMonteCarloAssemblyMover, protocols::membrane::TiltMover, protocols::minimization_packing::RotamerTrialsMinMover, protocols::analysis::simple_metrics::RunSimpleMetricsMover, protocols::denovo_design::movers::FastDesign, protocols::fold_from_loops::movers::NubInitioLoopClosureMover, protocols::match::MatcherMover, protocols::membrane::AddMPLigandMover, protocols::minimization_packing::PackRotamersMover, protocols::minimization_packing::RotamerTrialsMover, protocols::simple_moves::SmoothSymmetricFragmentMover, protocols::analysis::GlycanInfoMover, protocols::ddg::ddGMover, protocols::recces::scratch::ThermalMinimizer, protocols::simple_moves::bin_transitions::InitializeByBins, protocols::symmetric_docking::membrane::MPSymDockMover, protocols::antibody::AntibodyNumberingConverterMover, protocols::cyclic_peptide::PeptideStubMover, protocols::membrane::SpinAroundPartnerMover, protocols::cyclic_peptide::TryDisulfPermutations, protocols::ligand_docking::HighResEnsemble, protocols::ligand_docking::TransformEnsemble, protocols::ncbb::oop::OopCreatorMover, protocols::antibody::constraints::ParatopeSiteConstraintMover, protocols::forge::remodel::RemodelDesignMover, protocols::grafting::CCDEndsGraftMover, protocols::hybridization::CartesianSampler, protocols::loops::loop_mover::refine::LoopMover_Refine_KIC, protocols::relax::membrane::MPFastRelaxMover, protocols::simple_moves::DisulfideInsertionMover, protocols::simple_moves::sidechain_moves::PerturbChiSidechainMover, protocols::simple_moves::StorePoseSnapshot, protocols::antibody::GraftCDRLoopsProtocol, protocols::electron_density::BfactorFittingMover, protocols::flxbb::InterlockAroma, protocols::enzdes::PackRotamersMoverPartGreedy, protocols::farnesyl::InstallFarnesylMover, protocols::features::TrajectoryReportToDB, protocols::hybridization::BackboneTorsionPerturbation, protocols::hybridization::BackboneTorsionSampler, protocols::membrane::MPQuickRelaxMover, protocols::membrane::SetMembranePositionMover, protocols::moves::MCShowMover, protocols::protein_interface_design::movers::PlaceSimultaneouslyMover, protocols::relax::RangeRelaxMover, protocols::simple_moves::DeleteChainsMover, protocols::abinitio::Protocol, protocols::antibody::snugdock::SnugDock, protocols::docking::InterfaceSidechainMinMover, protocols::pose_creation::MergePDBMover, protocols::sewing::hashing::AlignmentFileGeneratorMover, protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler, protocols::calc_taskop_movers::ConsensusDesignMover, protocols::cryst::UpdateCrystInfo, protocols::docking::DockingLowRes, protocols::docking::DockMCMProtocol, protocols::enzdes::EnzRepackMinimize, protocols::hybridization::CartesianHybridize, protocols::ligand_docking::LigandBaseProtocol, protocols::membrane::MembranePositionFromTopologyMover, protocols::antibody_legacy::CDRH3Modeler, protocols::chemically_conjugated_docking::UBQ_GTPaseMover, protocols::farnesyl::SampleFarnesylMover, protocols::grafting::simple_movers::KeepRegionMover, protocols::abinitio::LoopJumpFoldCst, protocols::membrane::OptimizeMembranePositionMover, protocols::cryst::SetCrystWeightMover, protocols::docking::DockMCMCycle, protocols::fold_from_loops::movers::DisplayPoseLabelsMover, protocols::rbsegment_relax::CCDMoveWrapper, protocols::relax::membrane::MPRangeRelaxMover, protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover, protocols::symmetric_docking::SymInterfaceSidechainMinMover, protocols::abinitio::abscript::AbscriptMover, protocols::analysis::LoopAnalyzerMover, protocols::backbone_moves::local_backbone_mover::LocalBackboneMover, protocols::constraint_movers::CstInfoMover, protocols::docking::DockSetupMover, protocols::forge::constraints::InvrotTreeRCG, protocols::membrane::MPLipidAccessibility, protocols::recces::sampler::MC_OneTorsion, protocols::rigid::WholeBodyRotationMover, protocols::simple_moves::ReportEffectivePKA, protocols::symmetric_docking::SymDockingHiRes, protocols::comparative_modeling::MultiThreadingMover, protocols::denovo_design::movers::DeclareStructureDataCovalentBondMover, protocols::docking::membrane::MPFindInterfaceMover, protocols::ligand_docking::StartFrom, protocols::moves::FilterReportAsPoseExtraScoresMover, protocols::moves::MonteCarloUtil, protocols::rna::movers::RNAIdealizeMover, protocols::stepwise::sampler::StepWiseSamplerSizedComb, protocols::aa_composition::AddMHCEpitopeConstraintMover, protocols::indexed_structure_store::movers::SegmentSequenceProfileMover, protocols::ligand_docking::Rotate, protocols::minimization_packing::DisulfideOptimizationMover, protocols::rigid::RigidBodyMover, protocols::simple_moves::BBDihedralSamplerMover, protocols::simple_moves::DumpSingleResidueRotamers, protocols::aa_composition::AddCompositionConstraintMover, protocols::cyclic_peptide::SymmetricCycpepAlign, protocols::forge::remodel::RemodelGlobalFrame, protocols::membrane::AddMembraneSpanConstraint, protocols::membrane::AddMembraneSpanTermZConstraint, protocols::ncbb::oop::OopDockDesignProtocol, protocols::relax::ClassicRelax, protocols::sewing::movers::AssemblyMover, protocols::symmetry::SymDockingSlideIntoContact, protocols::aa_composition::AddHelixSequenceConstraintsMover, protocols::abinitio::KinematicAbinitio, protocols::antibody::RefineOneCDRLoop, protocols::membrane::visualize::VisualizeEmbeddingMover, protocols::monte_carlo::MonteCarloTest, protocols::ncbb::NcbbDockDesignProtocol, protocols::relax::LocalRelax, protocols::simple_moves::MSDMover, protocols::stepwise::sampler::rna::RNA_ChiStepWiseSampler, protocols::abinitio::abscript::RigidChunkCM, protocols::canonical_sampling::TrialCounterObserver, protocols::docking::membrane::QuickRelaxPartnersSeparately, protocols::forge::remodel::RemodelAccumulator, protocols::indexed_structure_store::movers::DirectSegmentLookupMover, protocols::monte_carlo::MonteCarloRecover, protocols::recces::sampler::rna::MC_RNA_KIC_Sampler, protocols::simple_moves::PoseFromPoseResourceMover, protocols::aa_composition::AddNetChargeConstraintMover, protocols::abinitio::abscript::ConstraintPreparer, protocols::denovo_design::movers::AlignResiduesMover, protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCD, protocols::membrane::benchmark::SampleTiltAngles, protocols::monte_carlo::MonteCarloReset, protocols::simple_moves::ScoreMover, protocols::denovo_design::movers::ExtendChainMover, protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure, protocols::loops::loop_mover::refine::SmallMinCCDTrial, protocols::pose_creation::ExtendedPoseMover, protocols::protein_interface_design::movers::DisulfideMover, protocols::rigid::UniformRigidBodyCM, protocols::simple_ddg::ddG, protocols::antibody_legacy::GraftMover, protocols::canonical_sampling::PDBTrajectoryRecorder, protocols::canonical_sampling::TemperatureController, protocols::evolution::NucleotideMutation, protocols::loophash::LoopHashMoverWrapper, protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC, protocols::mean_field::GenMeanFieldMover, protocols::membrane::OptimizeProteinEmbeddingMover, protocols::protein_interface_design::movers::TryRotamers, protocols::membrane::MPMutateRelaxMover, protocols::simple_moves::ShortBackrubMover, protocols::simple_moves::SmoothFragmentMover, protocols::antibody::H3RefineCCD, protocols::canonical_sampling::SilentTrajectoryRecorder, protocols::docking::ConformerSwitchMover, protocols::environment::CoMTrackerCM, protocols::ligand_docking::HighResDocker, protocols::matdes::SymDofMover, protocols::moves::ProfilerMover, protocols::simple_moves::ConvertRealToVirtualMover, protocols::splice::AlignEndsMover, protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMover, protocols::abinitio::DoubleLayerKinematicAbinitio, protocols::fldsgn::MatchResiduesMover, protocols::ligand_docking::Translate, protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer, protocols::moves::IteratedConvergenceMover, protocols::normalmode::NormalModeMinimizer, protocols::protein_interface_design::movers::PlacementAuctionMover, protocols::simple_moves::ConvertVirtualToRealMover, protocols::symmetry::SetupForSymmetryMover, protocols::canonical_sampling::CanonicalSamplingMover, protocols::legacy_sewing::LegacyAppendAssemblyMover, protocols::loops::loop_mover::refine::ShearMinCCDTrial, protocols::minimization_packing::TaskAwareMinMover, protocols::rigid::UniformRigidBodyMover, protocols::simple_moves::ShakeStructureMover, protocols::stepwise::sampler::StepWiseSamplerOneValue, protocols::task_operations::StoreCompoundTaskMover, protocols::loophash::LoopHashLibrary, protocols::stepwise::sampler::rna::RNA_SugarStepWiseSampler, protocols::abinitio::KinematicTaskControl, protocols::hotspot_hashing::movers::PlaceSurfaceProbe, protocols::minimization_packing::PertMinMover, protocols::rigid::WholeBodyTranslationMover, protocols::simple_moves::WriteFiltersToPose, protocols::abinitio::abscript::FragmentJumpCM, protocols::docking::DockMinMover, protocols::grafting::simple_movers::ReplaceRegionMover, protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure, protocols::simple_moves::BackboneMover, protocols::simple_moves::Tumble, protocols::abinitio::abscript::AbscriptLoopCloserCM, protocols::canonical_sampling::SidechainMetropolisHastingsMover, protocols::denovo_design::movers::AddSegmentDataMover, protocols::denovo_design::movers::MakeAsymmetricStructureDataMover, protocols::enzdes::AddOrRemoveMatchCsts, protocols::ligand_docking::Transform, protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure, protocols::sewing::movers::LigandBindingAssemblyMover, protocols::abinitio::abscript::FragmentCM, protocols::antibody::LHRepulsiveRampLegacy, protocols::constraint_movers::AddConstraintsToCurrentConformationMover, protocols::denovo_design::movers::SetResidueAliasMover, protocols::hybridization::DomainAssembly, protocols::loops::loop_mover::LoopMover, protocols::loops::loop_mover::refine::RepackTrial, protocols::membrane::RandomPositionRotationMover, protocols::sewing::movers::AppendAssemblyMover, protocols::surface_docking::SurfaceDockingProtocol, protocols::denovo_design::movers::FoldTreeFromFoldGraphMover, protocols::grafting::GraftMoverBase, protocols::hybridization::ChunkTrialMover, protocols::kinematic_closure::BalancedKicMover, protocols::loop_modeling::refiners::RepackingRefiner, protocols::splice::RBInMover, protocols::stepwise::modeler::StepWiseConnectionSampler, protocols::stepwise::sampler::rna::RNA_KIC_Sampler, protocols::electron_density::VoxelSpacingRefinementMover, protocols::flexpep_docking::FlexPepDockingProtocol, protocols::forge::constraints::RemoveRemodelCsts, protocols::loop_modeling::refiners::MinimizationRefiner, protocols::rosetta_scripts::MultiplePoseMover, protocols::stepwise::sampler::StepWiseSamplerRingConformer, protocols::struct_fragment::StructFragmentMover, protocols::aa_composition::ClearCompositionConstraintsMover, protocols::antibody::design::MutateFrameworkForCluster, protocols::constraint_generator::RemoveConstraints, protocols::environment::ScriptCM, protocols::grafting::simple_movers::InsertPoseIntoPoseMover, protocols::ligand_docking::InterfaceScoreCalculator, protocols::ligand_docking::LigandDockProtocol, protocols::loop_modeling::utilities::PrepareForFullatom, protocols::seeded_abinitio::SeedFoldTree, protocols::toolbox::SamplerPlusPlus, protocols::abinitio::abscript::StructPerturberCM, protocols::protein_interface_design::movers::LoopRemodel, protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover, protocols::rbsegment_relax::RBSegmentMover, protocols::simple_moves::UniformRotationMover, protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSamplerWithResidueList, protocols::symmetric_docking::SymFoldandDockRbTrialMover, protocols::carbohydrates::RingPlaneFlipMover, protocols::grafting::simple_movers::DeleteRegionMover, protocols::loop_grower::FragmentExtension, protocols::simple_moves::FindConsensusSequence, protocols::comparative_modeling::ExtraThreadingMover, protocols::constraint_generator::AddConstraints, protocols::fold_from_loops::movers::AlignByResidueSelectorMover, protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMover, protocols::membrane::benchmark::MakeCanonicalHelix, protocols::minimization_packing::RotamerizeMover, protocols::minimization_packing::symmetry::SymEnergyCutRotamerTrialsMover, protocols::minimization_packing::symmetry::TaskAwareSymMinMover, protocols::protein_interface_design::movers::LoopMoverFromCommandLine, protocols::simple_moves::WobbleMover, protocols::canonical_sampling::DbTrajectoryRecorder, protocols::forge::remodel::RemodelLigandHandler, protocols::hybridization::InsertChunkMover, protocols::loops::loop_mover::refine::LoopMover_Refine_Backrub, protocols::LoopRebuild, protocols::pose_creation::MakePolyXMover, protocols::rigid::RollMover, protocols::simple_moves::MembraneTopology, protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSamplerWithResidueAlternatives, protocols::stepwise::sampler::rna::RNA_NucleosideStepWiseSampler, protocols::calc_taskop_movers::DesignRepackMover, protocols::canonical_sampling::TemperingBase, protocols::forge::constraints::NtoCConstraintGenerator, protocols::loops::loop_mover::refine::LoopRefineInnerCycle, protocols::nonlocal::BiasedFragmentMover, protocols::pose_length_moves::ConnectChainsMover, protocols::protein_interface_design::movers::DockWithHotspotMover, protocols::protein_interface_design::movers::SaveAndRetrieveSidechains, protocols::rna::denovo::movers::RNA_FragmentMover, protocols::simple_filters::EvaluatedTrialMover, protocols::simple_moves::asym_fold_and_dock::AsymFoldandDockRbTrialMover, protocols::simple_moves::SymmetricFragmentMover, protocols::stepwise::sampler::StepWiseSamplerSizedAny, protocols::docking::SidechainMinMover, protocols::enzymatic_movers::GlycosyltransferaseMover, protocols::flexpep_docking::FlexPepDockingAbInitio, protocols::floppy_tail::FloppyTailMover, protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMover, protocols::loops::loop_closure::kinematic_closure::KinematicMover, protocols::simple_moves::oop::OopDPuckMinusMover, protocols::noesy_assign::DistanceScoreMover, protocols::simple_moves::RingConformationMover, protocols::stepwise::sampler::StepWiseSamplerOneTorsion, protocols::dna::DnaInterfaceMultiStateDesign, protocols::pb_potential::SetupPoissonBoltzmannPotential, protocols::recces::sampler::rna::MC_RNA_Sugar, protocols::rigid::MembraneNormalPerturbationMover, protocols::rigid::RigidBodyMotionMover, protocols::simple_moves::sidechain_moves::SetChiMover, protocols::simple_moves::SwitchResidueTypeSetMover, protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSampler, protocols::docking::DockingPrepackProtocol, protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMover, protocols::legacy_sewing::LegacyGivenPathAssemblyMover, protocols::legacy_sewing::LegacyGreedyAssemblyMover, protocols::ligand_docking::MinimizeBackbone, protocols::moves::DsspMover, protocols::moves::FilterReporterMover, protocols::moves::IfMover, protocols::simple_moves::AddChainMover, protocols::simple_moves::ConstrainToIdealMover, protocols::stepwise::legacy::modeler::protein::StepWiseProteinPoseSetup, protocols::surface_docking::CentroidRelaxMover, protocols::symmetry::SymDockingInitialPerturbation, protocols::antibody::snugdock::SnugDockProtocol, protocols::canonical_sampling::TrajectoryRecorder, protocols::denovo_design::movers::RotateSegmentMover, protocols::flexpep_docking::FlexPepDockingLowRes, protocols::hydrate::Hydrate, protocols::moves::JumpOutMover, protocols::qsar::RenderGridsToKinemage, protocols::simple_moves::DME_FilterMover, protocols::simple_moves::ReturnSidechainMover, protocols::stepwise::sampler::StepWiseSamplerComb, protocols::antibody::LHRepulsiveRamp, protocols::antibody_legacy::AntibodyModeler, protocols::constraint_movers::ConstraintSetMover, protocols::constraint_movers::ResidueTypeConstraintMover, protocols::dna::DesignProteinBackboneAroundDNA, protocols::dna::SeparateDnaFromNonDna, protocols::docking::DockingEnsemblePrepackProtocol, protocols::ligand_docking::FinalMinimizer, protocols::ligand_docking::UnconstrainedTorsionsMover, protocols::loops::loop_closure::kinematic_closure::KinematicWrapper, protocols::loops::loop_mover::LoopCM, protocols::moves::ChangeFoldTreeMover, protocols::membrane::HelixFromSequence, protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover, protocols::protein_interface_design::movers::PlacementMinimizationMover, protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover, protocols::protein_interface_design::movers::SetAtomTree, protocols::rna::denovo::coarse::CoarseRNA_LoopCloser, protocols::rosetta_scripts::MultipleOutputWrapper, protocols::stepwise::monte_carlo::mover::AddMover, protocols::toolbox::match_enzdes_util::AlignPoseToInvrotTreeMover, protocols::ligand_docking::SlideTogether, protocols::minimization_packing::SaneMinMover, protocols::pose_creation::MakeJunctionsMover, protocols::protein_interface_design::movers::LoopFinder, protocols::protein_interface_design::movers::MapHotspot, protocols::rbsegment_relax::FragInsertAndAlignMover, protocols::rbsegment_relax::OptimizeThreadingMover, protocols::splice::RBOutMover, protocols::stepwise::monte_carlo::mover::DeleteMover, protocols::abinitio::abscript::AbscriptStageMover, protocols::antibody::H3PerturbCCD, protocols::antibody::RefineOneCDRLoopCentroid, protocols::cyclic_peptide::PeptideCyclizeMover, protocols::denovo_design::movers::SealFoldTreeMover, protocols::dna::DnaInterfaceMinMover, protocols::electron_density::SetupForDensityScoringMover, protocols::environment::EnvMover, protocols::fold_from_loops::movers::MoveMapFactoryToNamedMoveMapMover, protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD_Moves, protocols::network::UIMover, protocols::rna::setup::RNA_JobDistributor, protocols::rosetta_scripts::AdditionalOutputWrapper, protocols::splice::TailSegmentMover, protocols::symmetric_docking::SymDockingLowRes, protocols::cryst::ReportGradientsMover, protocols::enzdes::BackboneSampler, protocols::enzymatic_movers::EnzymaticMover, protocols::fold_from_loops::movers::SavePDBInfoMover, protocols::loop_modeling::refiners::RotamerTrialsRefiner, protocols::matdes::ExtractSubposeMover, protocols::minimization_packing::RepackSidechainsMover, protocols::ncbb::SecStructFinder, protocols::protein_interface_design::movers::LoopLengthChange, protocols::protein_interface_design::movers::RepackMinimize, protocols::rbsegment_relax::RBSegmentRelax, protocols::rna::denovo::movers::RNP_HighResMover, protocols::docking::EllipsoidalRandomizationMover, protocols::legacy_sewing::LegacyEnumerateAssemblyMover, protocols::ligand_docking::ComputeLigandRDF, protocols::md::MDBase, protocols::motifs::MotifDnaPacker, protocols::protein_interface_design::movers::DesignMinimizeHbonds, protocols::recces::sampler::MC_Sampler, protocols::rna::denovo::movers::RNA_DeNovoMasterMover, protocols::rna::denovo::movers::RNA_Relaxer, protocols::rna::denovo::RNA_FragmentMonteCarlo, protocols::simple_moves::ContingentAcceptMover, protocols::simple_moves::RandomTorsionMover, protocols::simple_moves::rational_mc::RationalMonteCarlo, protocols::simple_moves::StructProfileMover, protocols::simple_moves::TorsionDOFMover, protocols::splice::SpliceOutTail, protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler, protocols::stepwise::sampler::input_streams::InputStreamStepWiseSampler, protocols::symmetric_docking::SymSidechainMinMover, protocols::antibody::CDRsMinPackMin, protocols::antibody::ModelCDRH3, protocols::cyclic_peptide::FlipChiralityMover, protocols::ligand_docking::GrowLigand, protocols::loophash::FastGapMover, protocols::loophash::Mover_LoopHashRefine, protocols::pose_creation::MergePDBatOverlapMover, protocols::rna::denovo::coarse::MultipleDomainMover, protocols::rna::denovo::RNA_DeNovoProtocol, protocols::seeded_abinitio::SegmentHybridizer, protocols::simple_moves::AddCavitiesMover, protocols::simple_moves::ModifyVariantTypeMover, protocols::stepwise::modeler::StepWiseMinimizer, protocols::stepwise::monte_carlo::mover::AddOrDeleteMover, protocols::surface_docking::FullatomRelaxMover, protocols::antibody::LHSnugFitLegacy, protocols::legacy_sewing::LegacyAddStartnodeFragments, protocols::ligand_docking::AddHydrogens, protocols::ligand_docking::LigandDesign, protocols::minimization_packing::symmetry::SymMinMover, protocols::moves::PDBDumpMover, protocols::protein_interface_design::movers::BackrubDDMover, protocols::protein_interface_design::movers::SetupHotspotConstraintsMover, protocols::simple_moves::asym_fold_and_dock::AsymFoldandDockMoveRbJumpMover, protocols::simple_moves::SwitchChainOrderMover, protocols::splice::SpliceOut, protocols::stepwise::legacy::modeler::rna::StepWiseRNA_PoseSetup, protocols::stepwise::modeler::StepWiseModeler, protocols::enzdes::EnzdesFlexBBProtocol, protocols::moves::FilterMover, protocols::simple_moves::oop::OopDPuckPlusMover, protocols::pose_length_moves::AnalyzeLoopModeling, protocols::pose_length_moves::InsertResMover, protocols::protein_interface_design::movers::PlaceOnLoop, protocols::residue_selectors::StoreResidueSubsetMover, protocols::rna::denovo::movers::RNA_HelixMover, protocols::simple_moves::AlignChainMover, protocols::simple_moves::RandomOmegaFlipMover, protocols::simple_moves::SuperimposeMover, protocols::splice::SpliceInTail, protocols::stepwise::monte_carlo::mover::ResampleMover, protocols::stepwise::sampler::StepWiseSamplerSized, protocols::symmetric_docking::SymFoldandDockSlideTrialMover, protocols::abinitio::AbrelaxMover, protocols::abinitio::DomainAssembly, protocols::ligand_docking::Rotates, protocols::loophash::LoopHashRelaxProtocol, protocols::loops::loop_mover::IndependentLoopMover, protocols::simple_moves::LoadPDBMover, protocols::relax::CentroidRelax, protocols::relax::RepeatProteinRelax, protocols::splice::SpliceIn, protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_Closer, protocols::stepwise::monte_carlo::mover::FromScratchMover, protocols::stepwise::monte_carlo::mover::StepWiseMasterMover, protocols::stepwise::monte_carlo::rna::RNA_AddDeleteMonteCarlo, protocols::stepwise::sampler::copy_dofs::CopyDofStepWiseSampler, protocols::stepwise::sampler::rna::RNA_KinematicCloser, protocols::enzdes::ModifyStoredRBConfs, protocols::flexpack::FlexPacker, protocols::ligand_docking::ga_ligand_dock::GALigandDock, protocols::moves::WhileMover, protocols::protein_interface_design::movers::AddChainBreak, protocols::rbsegment_relax::IdealizeHelicesMover, protocols::seeded_abinitio::GrowPeptides, protocols::simple_moves::chiral::ChiralMover, protocols::simple_moves::DumpPdb, protocols::simple_moves::SetupMetalsMover, protocols::splice::SpliceInAntibody, protocols::stepwise::modeler::protein::StepWiseProteinBackboneSampler, protocols::stepwise::modeler::rna::sugar::VirtualSugarSampler, protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSamplerComb, protocols::task_operations::StoreCombinedStoredTasksMover, protocols::antibody::AntibodyModelerProtocol, protocols::antibody::RefineBetaBarrel, protocols::comparative_modeling::PartialThreadingMover, protocols::enzdes::SecondaryMatchProtocol, protocols::fibril::SetupForFibrilMover, protocols::indel::IndelOptimizationMover, protocols::matdes::SchemePlaceMotifsMover, protocols::moves::RepeatMover, protocols::protein_interface_design::movers::SpinMover, protocols::relax::AtomCoordinateCstMover, protocols::rna::denovo::movers::RNA_Minimizer, protocols::seeded_abinitio::SeedSetupMover, protocols::simple_moves::FavorSequenceProfile, protocols::simple_moves::FragmentMover, protocols::simple_moves::WriteSSEMover, protocols::stepwise::monte_carlo::mover::VaryLoopLengthMover, protocols::stepwise::sampler::jump::JumpStepWiseSampler, protocols::carbohydrates::IdealizeAnomericHydrogens, protocols::loops::FoldTreeFromLoops, protocols::nonlocal::HelixRotate, protocols::protein_interface_design::movers::BestHotspotCstMover, protocols::protein_interface_design::movers::InterfaceRecapitulationMover, protocols::protein_interface_design::movers::RandomMutation, protocols::rna::denovo::output::RNA_FragmentMonteCarloOutputter, protocols::seeded_abinitio::CloseFold, protocols::simple_moves::PSSM2BfactorMover, protocols::splice::SpliceOutAntibody, protocols::stepwise::modeler::rna::o2prime::O2PrimePacker, protocols::stepwise::modeler::rna::phosphate::PhosphateMover, protocols::task_operations::StoreTaskMover, protocols::anchored_design::AnchoredDesignMover, protocols::antibody::GraftedStemOptimizer, protocols::antibody::H3CterInsert, protocols::cluster::GatherPosesMover, protocols::cyclic_peptide::CreateTorsionConstraint, protocols::hybridization::WeightedFragmentSmoothTrialMover, protocols::magnesium::MgWaterHydrogenPacker, protocols::nonlocal::SheetTranslate, protocols::pose_length_moves::FixAllLoopsMover, protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots, protocols::protein_interface_design::movers::LoopOver, protocols::protein_interface_design::movers::PrepackMover, protocols::rigid::MembraneCenterPerturbationMover, protocols::seeded_abinitio::CAcstGenerator, protocols::simple_moves::LoadUnboundRotMover, protocols::simple_moves::MissingDensityToJumpMover, protocols::stepwise::legacy::modeler::protein::StepWiseProteinMinimizer, protocols::stepwise::sampler::protein::ProteinFragmentStepWiseSampler, protocols::symmetric_docking::SymFoldandDockMoveRbJumpMover, protocols::symmetry::SymShakeStructureMover, protocols::calc_taskop_movers::ForceDisulfidesMover, protocols::features::InterfaceDdGMover, protocols::fldsgn::SheetRemodelConstraintGenerator, protocols::loop_build::LoopmodelWrapper, protocols::metal_interface::ZincHeterodimerMover, protocols::moves::StructureRestrictor, protocols::rna::movers::RNA_LoopCloser, protocols::seeded_abinitio::SwapSegment, protocols::stepwise::legacy::modeler::rna::RNA_AnalyticLoopCloser, protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger, protocols::stepwise::monte_carlo::rna::RNA_O2PrimeMover, protocols::stepwise::sampler::protein::ProteinMainChainStepWiseSampler, protocols::canonical_sampling::ProgressBarObserver, protocols::cyclic_peptide::CreateDistanceConstraint, protocols::legacy_sewing::LegacyAssemblyMover, protocols::magnesium::MgHydrater, protocols::magnesium::MgMonteCarlo, protocols::medal::MedalMover, protocols::minimization_packing::symmetry::SymRotamerTrialsMover, protocols::rigid::RotateJumpAxisMover, protocols::simple_moves::CyclizationMover, protocols::simple_moves::DeleteChainMover, protocols::stepwise::sampler::copy_dofs::ResidueListStepWiseSampler, protocols::abinitio::ResolutionSwitcher, protocols::cyclic_peptide::DeclareBond, protocols::ligand_docking::CompoundTranslate, protocols::make_rot_lib::MakeRotLibMover, protocols::medal::MedalExchangeMover, protocols::protein_interface_design::movers::HotspotHasherMover, protocols::rbsegment_relax::MakeStarTopologyMover, protocols::seeded_abinitio::CoordinateCst, protocols::simple_moves::PDBReloadMover, protocols::stepwise::modeler::packer::SideChainCopier, protocols::stepwise::modeler::packer::StepWisePacker, protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser, protocols::stepwise::sampler::StepWiseSamplerOneValueComb, protocols::symmetry::SymmetricRMSMover, protocols::topology_broker::RigidBodyRandomTMHMover, protocols::cutoutdomain::CutOutDomain, protocols::electron_density::ReportFSC, protocols::enzdes::EnzdesFixBBProtocol, protocols::hybridization::MRMover, protocols::ligand_docking::TetherLigand, protocols::loop_modeling::samplers::LegacyKicSampler, protocols::protein_interface_design::movers::FavorNativeResiduePreCycle, protocols::protein_interface_design::movers::SetTemperatureFactor, protocols::protein_interface_design::movers::TaskAwareCsts, protocols::protein_interface_design::movers::VLB, protocols::recces::RECCES_Mover, protocols::rna::setup::RNA_MonteCarloJobDistributor, protocols::simple_moves::BBConRotMover, protocols::simple_moves::RepulsiveOnlyMover, protocols::simple_moves::SequenceProfileMover, protocols::simple_moves::TailsScoreMover, protocols::simple_moves::VirtualRootMover, protocols::star::StarAbinitio, protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker, protocols::stepwise::monte_carlo::StepWiseMonteCarlo, protocols::electron_density::ScaleMapIntensities, protocols::frag_picker::nonlocal::NonlocalFrags, protocols::ligand_docking::MinimizeLigand, protocols::ligand_docking::RandomConformers, protocols::minimization_packing::symmetry::SymPackRotamersMover, protocols::monte_carlo::ResetBaselineMover, protocols::moves::CyclicMover, protocols::protein_interface_design::movers::BuildAlaPose, protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle, protocols::protein_interface_design::movers::ShoveResidueMover, protocols::protein_interface_design::movers::SubroutineMover, protocols::protein_interface_design::movers::TopologyBrokerMover, protocols::seeded_abinitio::DefineMovableLoops, protocols::simple_moves::AddJobPairData, protocols::stepwise::modeler::precomputed::PrecomputedLibraryMover, protocols::stepwise::modeler::rna::checker::RNA_ChainClosureChecker, protocols::stepwise::modeler::rna::sugar::VirtualSugarJustInTimeInstantiator, protocols::surface_docking::SurfaceOrientMover, protocols::symmetry::DetectSymmetry, protocols::antibody::GraftOneCDRLoop, protocols::ub_e2c::ubi_e2c_modeler, protocols::ligand_docking::AddHydrogen, protocols::minimization_packing::SetReturningPackRotamersMover, protocols::simple_moves::oop::OopPuckMinusMover, protocols::simple_moves::oop::OopRandomSmallMover, protocols::simple_moves::triazolamer::TriazolamerRandomSmallMover, protocols::simple_moves::RepeatPropagationMover, protocols::protein_interface_design::movers::PeptideStapleDesignMover, protocols::qsar::qsarMover, protocols::rna::movers::RNA_DeNovoOptimizer, protocols::simple_moves::CombinePoseMover, protocols::simple_moves::TorsionSetMover, protocols::stepwise::monte_carlo::rna::RNA_TorsionMover, protocols::domain_assembly::AssembleLinkerMover, protocols::ligand_docking::RigidSearchMover, protocols::ligand_docking::WriteLigandMolFile, protocols::loop_modeling::utilities::AcceptanceCheck, protocols::loop_modeling::utilities::LoopMoverGroup, protocols::protein_interface_design::movers::PatchdockTransform, protocols::stepwise::modeler::rna::sugar::VirtualSugarSamplerFromStringList, protocols::simple_moves::a3b_hbs::A3BHbsPatcher, protocols::simple_moves::oop::OopRandomPuckMover, protocols::simple_moves::AddPDBInfoMover, protocols::simple_moves::CopyDofMover, protocols::simple_moves::ProlineFixMover, protocols::simple_moves::ReportXYZ, protocols::comparative_modeling::StealLigandMover, protocols::enzdes::EnzdesBaseProtocol, protocols::magnesium::MgMinimizer, protocols::simple_moves::PeptideStapleMover, protocols::protein_interface_design::movers::DockAndRetrieveSidechains, protocols::rosetta_scripts::SavePoseMover, protocols::stepwise::modeler::rna::bulge::BulgeUnApplyMover, protocols::symmetric_docking::SymDockBaseProtocol, protocols::magnesium::MgScanner, protocols::moves::CompositionMover, protocols::stepwise::modeler::rna::bulge::BulgeApplyMover, protocols::vardist_solaccess::LoadVarSolDistSasaCalculatorMover, protocols::analysis::PackStatMover, protocols::antibody::CloseOneCDRLoop, protocols::comparative_modeling::LoopRelaxThreadingMover, protocols::cyclic_peptide::CreateAngleConstraint, protocols::domain_assembly::PostDockAssemblyScorer, protocols::ligand_docking::RandomConformerMover, protocols::magnesium::MgOrbitalFrameFinder, protocols::moves::VectorPoseMover, protocols::simple_moves::oop::OopMover, protocols::simple_moves::oop::OopPatcher, protocols::simple_moves::triazolamer::TriazolamerMover, protocols::rbsegment_relax::AutoRBMover, protocols::rigid::MovePoseToMembraneCenterMover, protocols::simple_moves::ChainSplitMover, protocols::simple_moves::FavorSymmetricSequence, protocols::stepwise::modeler::rna::sugar::SugarInstantiateMover, protocols::stepwise::modeler::rna::sugar::SugarVirtualizeMover, protocols::stepwise::sampler::protein::ProteinBetaAntiParallelStepWiseSampler, protocols::hybridization::WeightedFragmentTrialMover, protocols::moves::NullMover, protocols::simple_moves::hbs::HbsPatcher, protocols::simple_moves::ResetFoldTree, protocols::simple_moves::SaveSequenceToCommentsMover, protocols::comparative_modeling::StealSideChainsMover, protocols::mpi_refinement::StructAvrgMover, protocols::loop_modeling::utilities::LoopFilter, protocols::relax::MiniRelax, protocols::splice::RotLibOut, protocols::canonical_sampling::WTEBiasEnergy, protocols::RotamerDump::RotamerDumpMover, protocols::simple_moves::CutChainMover, protocols::constraint_movers::ClearConstraintsMover, protocols::loop_modeling::utilities::PrepareForCentroid, protocols::simple_moves::oop::OopPuckPlusMover, protocols::simple_moves::AddResidueLabelMover, protocols::comparative_modeling::RecoverSideChainsMover, protocols::domain_assembly::AddAssemblyConstraints, protocols::domain_assembly::CombineChainsMover, protocols::docking::stateless::SaneDockingProtocol, protocols::loop_build::LoopBuildMover, and protocols::RBSegmentRelaxImpl.

Referenced by protocols::forge::remodel::RemodelConstraintGenerator::clear_stored_constraints(), protocols::environment::ClientMover::initialize(), protocols::moves::operator<<(), protocols::forge::remodel::RemodelConstraintGenerator::parse_my_tag(), protocols::environment::ClientMover::passport(), protocols::environment::ClientMover::pop_passport(), protocols::environment::ClientMover::push_passport(), protocols::forge::remodel::RemodelConstraintGenerator::remove_remodel_constraints_from_pose(), protocols::environment::ClientMover::sandboxed_copy(), show(), and protocols::environment::ClientMover::state_check().

PoseCOP protocols::moves::Mover::get_native_pose ( ) const

References native_pose_.

Referenced by protocols::flexpep_docking::FlexPepDockingProtocol::addLowResStatistics(), protocols::rna::denovo::RNA_FragmentMonteCarlo::align_pose(), protocols::stepwise::legacy::modeler::protein::StepWiseProteinPoseSetup::align_poses(), protocols::docking::stateless::SaneDockingProtocol::apply(), protocols::symmetry::SymmetricRMSMover::apply(), protocols::cluster::GatherPosesMover::apply(), protocols::antibody::GraftCDRLoopsProtocol::apply(), protocols::rna::setup::RNA_MonteCarloJobDistributor::apply(), protocols::rna::denovo::RNA_DeNovoProtocol::apply(), protocols::rna::denovo::RNA_FragmentMonteCarlo::apply(), protocols::antibody::ModelCDRH3::apply(), protocols::antibody_legacy::AntibodyModeler::apply(), protocols::flexpep_docking::FlexPepDockingProtocol::apply(), protocols::loops::loop_mover::refine::LoopMover_Refine_KIC::apply(), protocols::simple_moves::ScoreMover::apply(), protocols::antibody::RefineOneCDRLoop::apply(), protocols::antibody_legacy::GraftMover::apply(), protocols::loops::loop_mover::refine::LoopMover_Refine_CCD::apply(), protocols::relax::ClassicRelax::apply(), protocols::relax::FastRelax::apply(), protocols::symmetric_docking::SymDockProtocol::apply(), protocols::docking::DockingProtocol::apply(), protocols::rosetta_scripts::ParsedProtocol::apply_mover(), protocols::relax::FastRelax::batch_apply(), protocols::symmetric_docking::SymDockProtocol::calc_rms(), protocols::relax::FastRelax::cmd_accept_to_best(), protocols::loops::loop_mover::refine::SmallMinCCDTrial::debug_five(), protocols::loops::loop_mover::refine::SmallMinCCDTrial::debug_four(), protocols::loops::loop_mover::refine::SmallMinCCDTrial::debug_one(), protocols::loops::loop_mover::refine::SmallMinCCDTrial::debug_three(), protocols::loops::loop_mover::refine::SmallMinCCDTrial::debug_two(), protocols::loops::loop_mover::refine::SmallMinCCDTrial::debug_zero(), protocols::stepwise::monte_carlo::StepWiseMonteCarlo::do_main_loop(), protocols::abinitio::KinematicAbinitio::dump_jump_log(), protocols::antibody::AntibodyModelerProtocol::echo_metrics_to_output(), protocols::enzdes::EnzdesBaseProtocol::enzdes_pack(), protocols::stepwise::modeler::protein::StepWiseProteinBackboneSampler::filter_and_save(), protocols::stepwise::modeler::protein::StepWiseProteinBackboneSampler::filter_native_BIG_BINS(), protocols::antibody::GraftCDRLoopsProtocol::finalize_setup(), protocols::antibody::AntibodyModelerProtocol::finalize_setup(), protocols::rna::denovo::RNA_FragmentMonteCarlo::get_rmsd_no_superimpose(), protocols::rna::denovo::RNA_FragmentMonteCarlo::get_rmsd_stems_no_superimpose(), protocols::stepwise::monte_carlo::StepWiseMonteCarlo::initialize(), protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::initialize(), protocols::rna::denovo::RNA_FragmentMonteCarlo::initialize_parameters(), protocols::stepwise::legacy::modeler::protein::StepWiseProteinPoseSetup::initialize_pose_from_streams(), protocols::stepwise::modeler::StepWiseConnectionSampler::initialize_pose_level_screeners(), protocols::stepwise::modeler::StepWiseModeler::initialize_working_parameters_and_root(), protocols::flexpep_docking::FlexPepDockingProtocol::markInterfaceBySideChainContacts(), protocols::flexpep_docking::FlexPepDockingProtocol::markNativeInterface(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCD::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC::model_loop(), protocols::stepwise::monte_carlo::StepWiseMonteCarlo::output_checkpoint_file(), protocols::magnesium::MgScanner::output_mg_to_silent_file(), protocols::stepwise::modeler::StepWiseMinimizer::output_minimized_pose_list(), protocols::stepwise::monte_carlo::StepWiseMonteCarlo::output_movie(), protocols::stepwise::monte_carlo::rna::RNA_AddDeleteMonteCarlo::output_silent_file(), protocols::rna::denovo::RNA_DeNovoProtocol::output_silent_struct(), protocols::stepwise::modeler::protein::StepWiseProteinBackboneSampler::prepare_ghost_pose(), protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure::process_fragments(), protocols::stepwise::monte_carlo::mover::ResampleMover::ResampleMover(), protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure::select_final_loop(), protocols::stepwise::legacy::modeler::rna::StepWiseRNA_PoseSetup::setup_native_pose(), protocols::stepwise::legacy::modeler::protein::StepWiseProteinPoseSetup::setup_working_native_pose(), protocols::flexpep_docking::FlexPepDockingProtocol::storeJobStatistics(), and protocols::rna::setup::RNA_CSA_JobDistributor::update_bank().

MoverCOP protocols::moves::Mover::get_self_ptr ( ) const
inline
MoverOP protocols::moves::Mover::get_self_ptr ( )
inline
MoverCAP protocols::moves::Mover::get_self_weak_ptr ( ) const
inline
MoverAP protocols::moves::Mover::get_self_weak_ptr ( )
inline
std::string protocols::moves::Mover::get_type ( ) const
inline
virtual Strings& protocols::moves::Mover::info ( )
inlinevirtual

non-const accessor

References info_.

Referenced by protocols::rna::movers::ErraserMinimizerMover::add_virtual_res(), protocols::pose_creation::ExtendedPoseMover::apply(), protocols::protein_interface_design::movers::LoopOver::apply(), protocols::environment::EnvMover::apply(), protocols::dna::DnaInterfacePacker::apply(), protocols::rna::movers::RNAThreadAndMinimizeMover::apply(), protocols::rosetta_scripts::ParsedProtocol::apply_filter(), protocols::analysis::GlycanInfoMover::get_attachment_point_string(), protocols::moves::PyMOLMover::get_PyMOL_model_name(), protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover::initialize(), protocols::dna::DnaInterfaceMultiStateDesign::initialize(), protocols::dna::DnaInterfacePacker::measure_bp_specificities(), protocols::minimization_packing::PackRotamersMover::note_packertask_settings(), protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover::output_results(), protocols::dna::DnaInterfaceMultiStateDesign::output_results(), protocols::dna::DnaInterfacePacker::post_packing(), protocols::moves::PyMOLMover::send_any(), protocols::moves::PyMOLMover::send_energy(), protocols::moves::PyMOLMover::send_hbonds(), protocols::moves::PyMOLMover::send_RAW_Energies(), protocols::toolbox::match_enzdes_util::AlignPoseToInvrotTreeMover::set_geomcst_for_superposition_from_enz_io(), protocols::dna::DesignProteinBackboneAroundDNA::set_loop_info(), and protocols::carbohydrates::RingPlaneFlipMover::setup_movable_torsion_pairs().

virtual Strings const& protocols::moves::Mover::info ( ) const
inlinevirtual

const accessor

References info_.

virtual core::Real protocols::moves::Mover::last_proposal_density_ratio ( )
inlinevirtual
static std::string protocols::moves::Mover::name ( )
inlinestatic

Referenced by protocols::dna::DnaInterfaceMultiStateDesign::add_dna_states(), protocols::RBSegmentRelaxImpl::apply(), protocols::loop_build::LoopBuildMover::apply(), protocols::simple_moves::DumpPdb::apply(), protocols::protein_interface_design::movers::DisulfideMover::apply(), protocols::recces::scratch::ThermalSamplingMover::apply(), protocols::loops::loop_mover::refine::LoopMover_Refine_KIC::apply(), protocols::moves::StructureRestrictor::apply(), protocols::canonical_sampling::CanonicalSamplingMover::apply(), protocols::moves::PyMOLMover::apply(), protocols::ligand_docking::HighResDocker::enable_ligand_rotamer_packing(), protocols::ligand_docking::ProtLigEnsemble::enable_ligand_rotamer_packing(), protocols::fold_from_loops::movers::NubInitioLoopClosureMover::fragments_id(), protocols::fold_from_loops::NubInitioMover::fragments_id(), protocols::ligand_docking::LigandDesign::fragments_to_string(), protocols::cluster::GatherPosesMover::get_distance_measure(), protocols::stepwise::sampler::StepWiseSamplerOneValue::get_name(), protocols::moves::RandomMover::get_name_individual_mover(), protocols::ncbb::SecStructFinder::initialize_rtype_vector(), protocols::indexed_structure_store::movers::DirectSegmentLookupMover::label_insertion(), protocols::ligand_docking::LigandDockMain::LigandDockMain(), protocols::pose_creation::MakeJunctionsMover::line_to_design(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC::model_loop(), protocols::ligand_docking::LigandDockProtocol::optimize_orientation3(), protocols::indexed_structure_store::movers::DirectSegmentLookupMover::output_lookup_count(), protocols::indexed_structure_store::movers::DirectSegmentLookupMover::output_lookup_length(), protocols::ligand_docking::CompoundTranslate::parse_my_tag(), protocols::cyclic_peptide::PeptideCyclizeMover::parse_my_tag(), protocols::ligand_docking::StartFrom::parse_my_tag(), protocols::simple_moves::FavorSequenceProfile::parse_my_tag(), protocols::cyclic_peptide::FlipChiralityMover::parse_my_tag(), protocols::rosetta_scripts::MultipleOutputWrapper::parse_my_tag(), protocols::ligand_docking::InterfaceScoreCalculator::parse_my_tag(), protocols::rosetta_scripts::AdditionalOutputWrapper::parse_my_tag(), protocols::canonical_sampling::MetricRecorder::parse_my_tag(), protocols::abinitio::abscript::AbscriptMover::parse_my_tag(), protocols::ligand_docking::StartFrom::parse_pdb_file(), protocols::moves::StructureRestrictor::pose_name(), protocols::recces::RECCES_Mover::prepare_output_torsion_ids(), protocols::simple_moves::RingConformationMover::provide_xml_schema(), protocols::carbohydrates::RingPlaneFlipMover::provide_xml_schema(), protocols::nonlocal::SingleFragmentMover::provide_xml_schema(), protocols::normalmode::NormalModeRelaxMover::provide_xml_schema(), protocols::flxbb::FlxbbDesign::read_options(), protocols::moves::PyMOLMover::send_any(), protocols::moves::PyMOLMover::send_energy(), protocols::moves::PyMOLMover::send_hbonds(), protocols::moves::PyMOLMover::send_membrane_planes(), protocols::moves::PyMOLMover::send_RAW_Energies(), protocols::simple_moves::bin_transitions::InitializeByBins::set_binfile_and_load(), protocols::simple_moves::bin_transitions::PerturbByBins::set_binfile_and_load(), protocols::dna::DnaInterfacePacker::set_filename_root(), protocols::moves::PyMOLMover::set_PyMOL_model_name(), protocols::residue_selectors::StoreResidueSubsetMover::set_subset(), protocols::cutoutdomain::CutOutDomain::source_pdb_name(), and protocols::indexed_structure_store::movers::DirectSegmentLookupMover::stored_subset_name().

Mover & protocols::moves::Mover::operator= ( Mover const &  other)
void protocols::moves::Mover::parse_my_tag ( TagCOP  tag,
basic::datacache::DataMap &  data,
Filters_map const &  filters,
Movers_map const &  movers,
Pose const &  pose 
)
virtual

Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing.

Some movers need not be parsed, so we shouldn't stop executions. This, however, calls attention to the lack of this method, which could be due to something as silly as a wrong parameters definition.

Reimplemented in protocols::forge::remodel::RemodelMover, protocols::rigid::RigidBodyTransMover, protocols::rigid::RigidBodyTiltMover, protocols::moves::PyMOLMover, protocols::hbnet::HBNet, protocols::cryst::MakeLatticeMover, protocols::membrane::TranslationRotationMover, protocols::cryst::SetRefinementOptionsMover, protocols::monte_carlo::GenericMonteCarloMover, protocols::moves::SwitchMover, protocols::rigid::RigidBodyPerturbNoCenterMover, protocols::cryst::TagPoseWithRefinementStatsMover, protocols::analysis::InterfaceAnalyzerMover, protocols::membrane::SetMembraneCenterMover, protocols::fldsgn::BluePrintBDR, protocols::simple_moves::WaterBoxMover, protocols::cryst::UpdateSolventMover, protocols::fold_from_loops::NubInitioMover, protocols::docking::DockingProtocol, protocols::motif_grafting::movers::MotifGraftMover, protocols::cryst::DockLatticeMover, protocols::membrane::RotationMover, protocols::flxbb::FlxbbDesign, protocols::comparative_modeling::LoopRelaxMover, protocols::moves::TrialMover, protocols::symmetry::ExtractAsymmetricPoseMover, protocols::docking::DockingSlideIntoContact, protocols::moves::RandomMover, protocols::cryst::FitBfactorsMover, protocols::forge::remodel::ResidueVicinityRCG, protocols::carbohydrates::GlycanTreeModeler, protocols::features::ReportToDB, protocols::antibody::AntibodyCDRGrafter, protocols::simple_moves::BackboneMover, protocols::enzdes::PredesignPerturbMover, protocols::membrane::SetMembraneNormalMover, protocols::carbohydrates::CreateGlycanSequonMover, protocols::moves::RampingMover, protocols::simple_moves::BBGaussianMover, protocols::membrane::AddMembraneMover, protocols::cryst::LoadDensityMapMover, protocols::cryst::MakeLayerMover, protocols::symmetric_docking::SymDockProtocol, protocols::calc_taskop_movers::CreateSequenceMotifMover, protocols::fldsgn::potentials::SetSecStructEnergies, protocols::carbohydrates::SimpleGlycosylateMover, protocols::legacy_sewing::LegacyAssemblyConstraintsMover, protocols::sewing::movers::LigandBindingAssemblyMover, protocols::carbohydrates::GlycanTreeSampler, protocols::fldsgn::CircularPermutation, protocols::symmetry::ExtractAsymmetricUnitMover, protocols::carbohydrates::LinkageConformerMover, protocols::minimization_packing::MinMover, protocols::docking::TemperedDocking, protocols::relax::FastRelax, protocols::rna::movers::RNAThreadAndMinimizeMover, protocols::canonical_sampling::BiasEnergy, protocols::pose_length_moves::NearNativeLoopCloser, protocols::hybridization::HybridizeProtocol, protocols::cryst::RecomputeDensityMapMover, protocols::cryst::CrystRMS, protocols::fold_from_loops::movers::SplitAndMixPoseMover, protocols::docking::DockingInitialPerturbation, protocols::cyclic_peptide::CrosslinkerMover, protocols::idealize::IdealizeMover, protocols::minimization_packing::BoltzmannRotamerMover, protocols::legacy_sewing::LegacyAssemblyMover, protocols::rosetta_scripts::ParsedProtocol, protocols::grafting::AnchoredGraftMover, protocols::minimization_packing::PackRotamersMover, protocols::fldsgn::potentials::SetAACompositionPotential, protocols::loop_modeling::LoopMover, protocols::loops::loop_closure::ccd::CCDLoopClosureMover, protocols::membrane::TranslationMover, protocols::backrub::BackrubProtocol, protocols::protein_interface_design::movers::PlaceStubMover, protocols::evolution::EvolutionaryDynamicsMover, protocols::simple_moves::PeriodicBoxMover, protocols::canonical_sampling::MetropolisHastingsMover, protocols::nonlocal::SingleFragmentMover, protocols::membrane::symmetry::SymmetricAddMembraneMover, protocols::sewing::hashing::AlignmentFileGeneratorMover, protocols::sewing::movers::AppendAssemblyMover, protocols::membrane::TransformIntoMembraneMover, protocols::symmetry::SetupNCSMover, protocols::docking::membrane::MPDockingMover, protocols::legacy_sewing::LegacyRepeatAssemblyMover, protocols::indexed_structure_store::movers::SegmentSequenceProfileMover, protocols::ncbb::oop::OopCreatorMover, protocols::sewing::movers::AssemblyMover, protocols::electron_density::BfactorFittingMover, protocols::indexed_structure_store::movers::DirectSegmentLookupMover, protocols::legacy_sewing::LegacyMonteCarloAssemblyMover, protocols::membrane::FlipMover, protocols::minimization_packing::RotamerTrialsMover, protocols::monte_carlo::GenericSimulatedAnnealer, protocols::ligand_docking::ProtLigEnsemble, protocols::antibody::design::AntibodyDesignMover, protocols::calc_taskop_movers::ConsensusDesignMover, protocols::simple_moves::BBDihedralSamplerMover, protocols::flxbb::InterlockAroma, protocols::minimization_packing::RotamerTrialsMinMover, protocols::fold_from_loops::movers::NubInitioLoopClosureMover, protocols::simple_moves::SimpleThreadingMover, protocols::ligand_docking::HighResEnsemble, protocols::membrane::SetMembranePositionMover, protocols::pose_creation::MergePDBMover, protocols::simple_moves::ReportEffectivePKA, protocols::canonical_sampling::SidechainMetropolisHastingsMover, protocols::cryst::UpdateCrystInfo, protocols::helical_bundle::BundleGridSampler, protocols::membrane::visualize::VisualizeMembraneMover, protocols::simple_moves::bin_transitions::InitializeByBins, protocols::simple_moves::bin_transitions::PerturbByBins, protocols::grafting::simple_movers::KeepRegionMover, protocols::helical_bundle::PerturbBundle, protocols::loophash::LoopHashDiversifier, protocols::membrane::TiltMover, protocols::simple_moves::ConvertRealToVirtualMover, protocols::simple_moves::DeleteChainsMover, protocols::analysis::simple_metrics::RunSimpleMetricsMover, protocols::helical_bundle::MakeBundle, protocols::membrane::AddMPLigandMover, protocols::membrane::SpinAroundPartnerMover, protocols::ncbb::oop::OopDockDesignProtocol, protocols::simple_moves::ConvertVirtualToRealMover, protocols::splice::Splice, protocols::cryst::SetCrystWeightMover, protocols::md::CartesianMD, protocols::membrane::MPQuickRelaxMover, protocols::ncbb::NcbbDockDesignProtocol, protocols::simple_moves::StorePoseSnapshot, protocols::hybridization::BackboneTorsionPerturbation, protocols::hybridization::BackboneTorsionSampler, protocols::antibody::AntibodyNumberingConverterMover, protocols::denovo_design::movers::BuildDeNovoBackboneMover, protocols::docking::DockSetupMover, protocols::antibody::design::MutateFrameworkForCluster, protocols::coupled_moves::CoupledMovesProtocol, protocols::dna::DnaInterfacePacker, protocols::hbnet::HBNetStapleInterface, protocols::loop_modeling::LoopProtocol, protocols::minimization_packing::PertMinMover, protocols::protein_interface_design::movers::PlaceSimultaneouslyMover, protocols::simple_moves::CopyRotamerMover, protocols::symmetric_docking::membrane::MPSymDockMover, protocols::abinitio::abscript::AbscriptMover, protocols::canonical_sampling::ParallelTempering, protocols::carbohydrates::RingPlaneFlipMover, protocols::denovo_design::movers::FastDesign, protocols::loops::loop_mover::refine::LoopMover_Refine_CCD, protocols::moves::MonteCarloUtil, protocols::pose_creation::MakeJunctionsMover, protocols::relax::membrane::MPFastRelaxMover, protocols::farnesyl::InstallFarnesylMover, protocols::loop_modeling::LoopBuilder, protocols::recces::scratch::ThermalMinimizer, protocols::simple_moves::SetTorsion, protocols::denovo_design::movers::FoldTreeFromFoldGraphMover, protocols::ligand_docking::Rotate, protocols::monte_carlo::MonteCarloTest, protocols::recces::scratch::ThermalSamplingMover, protocols::simple_moves::sidechain_moves::SidechainMCMover, protocols::docking::membrane::MPDockingSetupMover, protocols::docking::membrane::MPFindInterfaceMover, protocols::helical_bundle::BackboneGridSampler, protocols::mean_field::GenMeanFieldMover, protocols::minimization_packing::MinPackMover, protocols::simple_moves::WriteFiltersToPose, protocols::canonical_sampling::MetricRecorder, protocols::chemically_conjugated_docking::UBQ_GTPaseMover, protocols::farnesyl::SampleFarnesylMover, protocols::membrane::OptimizeMembranePositionMover, protocols::monte_carlo::MonteCarloReset, protocols::rotamer_recovery::RotamerRecoveryMover, protocols::simple_moves::RingConformationMover, protocols::simple_moves::ShortBackrubMover, protocols::canonical_sampling::TemperingBase, protocols::carbohydrates::GlycanTreeMinMover, protocols::forge::constraints::InverseRotamersRCG, protocols::match::MatcherMover, protocols::matdes::MatDesGreedyOptMutationMover, protocols::monte_carlo::MonteCarloRecover, protocols::relax::membrane::MPRangeRelaxMover, protocols::backbone_moves::local_backbone_mover::LocalBackboneMover, protocols::constraint_movers::CstInfoMover, protocols::docking::membrane::QuickRelaxPartnersSeparately, protocols::hybridization::CartesianSampler, protocols::pose_creation::ExtendedPoseMover, protocols::simple_moves::DumpSingleResidueRotamers, protocols::splice::TailSegmentMover, protocols::denovo_design::movers::DeclareStructureDataCovalentBondMover, protocols::enzdes::BackboneSampler, protocols::fldsgn::MatchResiduesMover, protocols::loop_grower::FragmentExtension, protocols::matdes::SymDofMover, protocols::membrane::MembranePositionFromTopologyMover, protocols::membrane::MPLipidAccessibility, protocols::analysis::GlycanInfoMover, protocols::backrub::BackrubSidechainMover, protocols::legacy_sewing::LegacyAppendAssemblyMover, protocols::minimization_packing::DisulfideOptimizationMover, protocols::relax::LocalRelax, protocols::simple_moves::sidechain_moves::SidechainMover, protocols::task_operations::StoreCompoundTaskMover, protocols::backrub::BackrubMover, protocols::cyclic_peptide::SymmetricCycpepAlign, protocols::denovo_design::movers::RotateSegmentMover, protocols::electron_density::VoxelSpacingRefinementMover, protocols::protein_interface_design::movers::BackrubDDMover, protocols::protein_interface_design::movers::TryRotamers, protocols::membrane::MPMutateRelaxMover, protocols::aa_composition::AddCompositionConstraintMover, protocols::aa_composition::AddHelixSequenceConstraintsMover, protocols::aa_composition::ClearCompositionConstraintsMover, protocols::features::TrajectoryReportToDB, protocols::ligand_docking::HighResDocker, protocols::loop_modeler::LoopModeler, protocols::membrane::AddMembraneSpanConstraint, protocols::membrane::AddMembraneSpanTermZConstraint, protocols::normalmode::NormalModeMinimizer, protocols::membrane::HelixFromSequence, protocols::rna::movers::ErraserMinimizerMover, protocols::simple_moves::sidechain_moves::SidechainMoverBase, protocols::abinitio::abscript::RigidChunkCM, protocols::design_opt::GreedyOptMutationMover, protocols::grafting::simple_movers::ReplaceRegionMover, protocols::hotspot_hashing::movers::PlaceSurfaceProbe, protocols::membrane::benchmark::SampleTiltAngles, protocols::normalmode::NormalModeRelaxMover, protocols::protein_interface_design::movers::DisulfideMover, protocols::rna::movers::RNAIdealizeMover, protocols::simple_moves::PoseFromPoseResourceMover, protocols::abinitio::abscript::AbscriptLoopCloserCM, protocols::ligand_docking::TransformEnsemble, protocols::protein_interface_design::movers::LoopRemodel, protocols::rigid::UniformRigidBodyCM, protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover, protocols::simple_moves::sidechain_moves::PerturbChiSidechainMover, protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover, protocols::aa_composition::AddMHCEpitopeConstraintMover, protocols::aa_composition::AddNetChargeConstraintMover, protocols::abinitio::abscript::FragmentJumpCM, protocols::antibody::design::AntibodyDesignProtocol, protocols::canonical_sampling::TrajectoryRecorder, protocols::simple_moves::DisulfideInsertionMover, protocols::environment::CoMTrackerCM, protocols::enzymatic_movers::EnzymaticMover, protocols::ligand_docking::Transform, protocols::membrane::OptimizeProteinEmbeddingMover, protocols::pose_creation::MakePolyXMover, protocols::protein_interface_design::movers::LoopMoverFromCommandLine, protocols::protein_interface_design::movers::PlacementAuctionMover, protocols::simple_ddg::ddG, protocols::canonical_sampling::HamiltonianExchange, protocols::denovo_design::movers::SealFoldTreeMover, protocols::enzdes::EnzRepackMinimize, protocols::flexpep_docking::FlexPepDockingProtocol, protocols::generalized_kinematic_closure::GeneralizedKIC, protocols::ligand_docking::Translate, protocols::moves::FilterReportAsPoseExtraScoresMover, protocols::pose_length_moves::ConnectChainsMover, protocols::rosetta_scripts::MultiplePoseMover, protocols::canonical_sampling::SimulatedTempering, protocols::cyclic_peptide::TryDisulfPermutations, protocols::grafting::simple_movers::InsertPoseIntoPoseMover, protocols::simple_moves::MutateResidue, protocols::simple_moves::Tumble, protocols::symmetric_docking::SymFoldandDockRbTrialMover, protocols::abinitio::abscript::StructPerturberCM, protocols::canonical_sampling::PDBTrajectoryRecorder, protocols::denovo_design::movers::BridgeChainsMover, protocols::grafting::simple_movers::DeleteRegionMover, protocols::minimization_packing::PackRotamersMoverLazy, protocols::minimization_packing::RepackSidechainsMover, protocols::ncbb::SecStructFinder, protocols::rosetta_scripts::AdditionalOutputWrapper, protocols::ligand_docking::InterfaceScoreCalculator, protocols::minimization_packing::symmetry::TaskAwareSymMinMover, protocols::moves::DsspMover, protocols::moves::IfMover, protocols::ncbb::SecStructMinimizeMover, protocols::protein_interface_design::movers::DockWithHotspotMover, protocols::rigid::RollMover, protocols::constraint_movers::ResidueTypeConstraintMover, protocols::denovo_design::movers::AlignResiduesMover, protocols::enzdes::PackRotamersMoverPartGreedy, protocols::protein_interface_design::movers::SaveAndRetrieveSidechains, protocols::relax::AtomCoordinateCstMover, protocols::rosetta_scripts::MultipleOutputWrapper, protocols::simple_moves::asym_fold_and_dock::AsymFoldandDockRbTrialMover, protocols::simple_moves::MembraneTopology, protocols::simple_moves::SetupMetalsMover, protocols::splice::SpliceOut, protocols::stepwise::monte_carlo::mover::AddMover, protocols::struct_fragment::StructFragmentMover, protocols::symmetry::SetupForSymmetryMover, protocols::denovo_design::movers::AddSegmentDataMover, protocols::denovo_design::movers::MakeAsymmetricStructureDataMover, protocols::enzymatic_movers::GlycosyltransferaseMover, protocols::forge::constraints::InvrotTreeRCG, protocols::protein_interface_design::movers::LoopFinder, protocols::splice::SpliceInTail, protocols::stepwise::monte_carlo::mover::DeleteMover, protocols::denovo_design::movers::SetResidueAliasMover, protocols::enzdes::AddOrRemoveMatchCsts, protocols::evolution::NucleotideMutation, protocols::minimization_packing::TaskAwareMinMover, protocols::simple_moves::ScoreMover, protocols::simple_moves::SwitchResidueTypeSetMover, protocols::splice::SpliceIn, protocols::constraint_movers::ConstraintSetMover, protocols::features::InterfaceDdGMover, protocols::forge::constraints::RemoveRemodelCsts, protocols::pb_potential::SetupPoissonBoltzmannPotential, protocols::protein_interface_design::movers::RepackMinimize, protocols::splice::SpliceInAntibody, protocols::environment::ScriptCM, protocols::forge::remodel::RemodelConstraintGenerator, protocols::helical_bundle::FitSimpleHelix, protocols::legacy_sewing::LegacyGivenPathAssemblyMover, protocols::legacy_sewing::LegacyGreedyAssemblyMover, protocols::ligand_docking::MinimizeBackbone, protocols::protein_interface_design::movers::DesignMinimizeHbonds, protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover, protocols::qsar::RenderGridsToKinemage, protocols::simple_moves::RandomTorsionMover, protocols::simple_moves::StructProfileMover, protocols::antibody::constraints::ParatopeEpitopeSiteConstraintMover, protocols::contact_map::ContactMap, protocols::denovo_design::DisulfidizeMover, protocols::moves::StructureRestrictor, protocols::splice::SpliceOutAntibody, protocols::antibody::constraints::CDRDihedralConstraintMover, protocols::canonical_sampling::SilentTrajectoryRecorder, protocols::dna::DnaInterfaceMultiStateDesign, protocols::ligand_docking::FinalMinimizer, protocols::membrane::benchmark::MakeCanonicalHelix, protocols::moves::IteratedConvergenceMover, protocols::rbsegment_relax::OptimizeThreadingMover, protocols::relax::RepeatProteinRelax, protocols::constraint_generator::RemoveConstraints, protocols::electron_density::SetupForDensityScoringMover, protocols::ligand_docking::SlideTogether, protocols::pose_length_moves::AnalyzeLoopModeling, protocols::protein_interface_design::movers::SetupHotspotConstraintsMover, protocols::rigid::UniformRigidBodyMover, protocols::seeded_abinitio::SeedFoldTree, protocols::splice::RotLibOut, protocols::stepwise::monte_carlo::mover::ResampleMover, protocols::canonical_sampling::TrialCounterObserver, protocols::cryst::ReportGradientsMover, protocols::matdes::ExtractSubposeMover, protocols::pose_length_moves::InsertResMover, protocols::simple_moves::sidechain_moves::SetChiMover, protocols::simple_moves::WriteSSEMover, protocols::stepwise::monte_carlo::mover::FromScratchMover, protocols::abinitio::abscript::FragmentCM, protocols::calc_taskop_movers::DesignRepackMover, protocols::cyclic_peptide::FlipChiralityMover, protocols::dna::DesignProteinBackboneAroundDNA, protocols::dna::SeparateDnaFromNonDna, protocols::fold_from_loops::movers::DisplayPoseLabelsMover, protocols::forge::constraints::NtoCConstraintGenerator, protocols::loop_modeling::utilities::PrepareForFullatom, protocols::loophash::LoopHashMoverWrapper, protocols::pose_creation::MergePDBatOverlapMover, protocols::simple_moves::ModifyVariantTypeMover, protocols::simple_moves::RandomOmegaFlipMover, protocols::constraint_generator::AddConstraints, protocols::denovo_design::movers::ExtendChainMover, protocols::legacy_sewing::LegacyEnumerateAssemblyMover, protocols::protein_interface_design::movers::MapHotspot, protocols::protein_interface_design::movers::PlacementMinimizationMover, protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover, protocols::simple_moves::MSDMover, protocols::simple_moves::SuperimposeMover, protocols::abinitio::abscript::ConstraintPreparer, protocols::analysis::LoopAnalyzerMover, protocols::constraint_movers::AddConstraintsToCurrentConformationMover, protocols::ligand_docking::ComputeLigandRDF, protocols::ligand_docking::GrowLigand, protocols::simple_moves::asym_fold_and_dock::AsymFoldandDockMoveRbJumpMover, protocols::simple_moves::FavorSequenceProfile, protocols::cyclic_peptide::CreateTorsionConstraint, protocols::dna::DnaInterfaceMinMover, protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMover, protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMover, protocols::legacy_sewing::LegacyAddStartnodeFragments, protocols::ligand_docking::AddHydrogens, protocols::ligand_docking::LigandDesign, protocols::loops::loop_mover::LoopCM, protocols::pose_length_moves::FixAllLoopsMover, protocols::protein_interface_design::movers::BestHotspotCstMover, protocols::protein_interface_design::movers::InterfaceRecapitulationMover, protocols::symmetric_docking::SymFoldandDockSlideTrialMover, protocols::vardist_solaccess::LoadVarSolDistSasaCalculatorMover, protocols::antibody::constraints::ParatopeSiteConstraintMover, protocols::fold_from_loops::movers::AlignByResidueSelectorMover, protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMover, protocols::protein_interface_design::movers::LoopOver, protocols::residue_selectors::StoreResidueSubsetMover, protocols::rosetta_scripts::SavePoseMover, protocols::simple_moves::DumpPdb, protocols::abinitio::DomainAssembly, protocols::cyclic_peptide::CreateDistanceConstraint, protocols::fold_from_loops::movers::MoveMapFactoryToNamedMoveMapMover, protocols::ligand_docking::ga_ligand_dock::GALigandDock, protocols::protein_interface_design::movers::PlaceOnLoop, protocols::rbsegment_relax::IdealizeHelicesMover, protocols::seeded_abinitio::SegmentHybridizer, protocols::simple_moves::SwitchChainOrderMover, protocols::cyclic_peptide::PeptideCyclizeMover, protocols::fold_from_loops::movers::SavePDBInfoMover, protocols::ligand_docking::StartFrom, protocols::protein_interface_design::movers::HotspotHasherMover, protocols::seeded_abinitio::CloseFold, protocols::task_operations::StoreCombinedStoredTasksMover, protocols::cutoutdomain::CutOutDomain, protocols::electron_density::ReportFSC, protocols::ligand_docking::Rotates, protocols::matdes::SchemePlaceMotifsMover, protocols::simple_moves::RepeatPropagationMover, protocols::protein_interface_design::movers::VLB, protocols::cyclic_peptide::PeptideStubMover, protocols::electron_density::ScaleMapIntensities, protocols::loop_modeling::refiners::RepackingRefiner, protocols::protein_interface_design::movers::FavorNativeResiduePreCycle, protocols::simple_moves::LoadUnboundRotMover, protocols::symmetric_docking::SymFoldandDockMoveRbJumpMover, protocols::symmetry::DetectSymmetry, protocols::task_operations::StoreTaskMover, protocols::fldsgn::SheetRemodelConstraintGenerator, protocols::loop_modeling::refiners::MinimizationRefiner, protocols::protein_interface_design::movers::BuildAlaPose, protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle, protocols::protein_interface_design::movers::PeptideStapleDesignMover, protocols::protein_interface_design::movers::PrepackMover, protocols::protein_interface_design::movers::RandomMutation, protocols::protein_interface_design::movers::SetAtomTree, protocols::protein_interface_design::movers::SpinMover, protocols::protein_interface_design::movers::TopologyBrokerMover, protocols::seeded_abinitio::CAcstGenerator, protocols::simple_moves::PDBReloadMover, protocols::simple_moves::LoadPDBMover, protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover, protocols::seeded_abinitio::GrowPeptides, protocols::seeded_abinitio::SeedSetupMover, protocols::simple_moves::FindConsensusSequence, protocols::splice::RBOutMover, protocols::environment::EnvMover, protocols::protein_interface_design::movers::LoopLengthChange, protocols::protein_interface_design::movers::SetTemperatureFactor, protocols::rbsegment_relax::MakeStarTopologyMover, protocols::seeded_abinitio::SwapSegment, protocols::simple_moves::AddResidueLabelMover, protocols::simple_moves::DeleteChainMover, protocols::calc_taskop_movers::ForceDisulfidesMover, protocols::qsar::qsarMover, protocols::seeded_abinitio::CoordinateCst, protocols::seeded_abinitio::DefineMovableLoops, protocols::simple_moves::AddPDBInfoMover, protocols::simple_moves::AlignChainMover, protocols::protein_interface_design::movers::AddChainBreak, protocols::protein_interface_design::movers::DockAndRetrieveSidechains, protocols::protein_interface_design::movers::PatchdockTransform, protocols::protein_interface_design::movers::SubroutineMover, protocols::simple_moves::AddJobPairData, protocols::simple_moves::CutChainMover, protocols::cyclic_peptide::CreateAngleConstraint, protocols::ligand_docking::CompoundTranslate, protocols::splice::RBInMover, protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots, protocols::protein_interface_design::movers::ShoveResidueMover, protocols::protein_interface_design::movers::TaskAwareCsts, protocols::simple_moves::AddChainMover, protocols::simple_moves::ContingentAcceptMover, protocols::simple_moves::SequenceProfileMover, protocols::simple_moves::VirtualRootMover, protocols::splice::AlignEndsMover, protocols::ligand_docking::RandomConformers, protocols::loops::FoldTreeFromLoops, protocols::monte_carlo::ResetBaselineMover, protocols::simple_moves::ReportXYZ, protocols::loop_modeling::refiners::RotamerTrialsRefiner, protocols::simple_moves::PSSM2BfactorMover, protocols::cyclic_peptide::DeclareBond, protocols::ligand_docking::WriteLigandMolFile, protocols::simple_moves::SaveSequenceToCommentsMover, protocols::constraint_movers::ClearConstraintsMover, protocols::loop_build::LoopmodelWrapper, protocols::simple_moves::FavorSymmetricSequence, and protocols::simple_moves::ResetFoldTree.

References protocols::moves::TR().

Referenced by protocols::canonical_sampling::SimulatedTempering::parse_my_tag().

static void protocols::moves::Mover::register_options ( )
inlinestatic
bool protocols::moves::Mover::reinitialize_for_each_job ( ) const
virtual
bool protocols::moves::Mover::reinitialize_for_new_input ( ) const
virtual
void protocols::moves::Mover::reset_status ( )

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

References last_status_, and protocols::moves::MS_SUCCESS.

Referenced by protocols::carbohydrates::LinkageConformerMover::apply(), protocols::abinitio::Protocol::apply(), and protocols::denovo_design::movers::FastDesign::apply().

void protocols::moves::Mover::set_current_job ( protocols::jobdist::BasicJobCOP  job)
virtual void protocols::moves::Mover::set_current_tag ( std::string const &  new_tag)
inlinevirtual
void protocols::moves::Mover::set_input_pose ( PoseCOP  pose)
virtual
void protocols::moves::Mover::set_last_move_status ( MoverStatus  status)
protected

nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says.

use this function for implementing filtering in your protocol - failed jobs should set the status to something other than "SUCCESS".

References last_status_.

Referenced by protocols::chemically_conjugated_docking::UBQ_GTPaseMover::analyze_and_filter(), protocols::loop_build::LoopBuildMover::apply(), protocols::protein_interface_design::movers::DockAndRetrieveSidechains::apply(), protocols::protein_interface_design::movers::VLB::apply(), protocols::rosetta_scripts::SavePoseMover::apply(), protocols::protein_interface_design::movers::PlaceOnLoop::apply(), protocols::protein_interface_design::movers::MapHotspot::apply(), protocols::pose_creation::MergePDBatOverlapMover::apply(), protocols::protein_interface_design::movers::LoopOver::apply(), protocols::pose_length_moves::FixAllLoopsMover::apply(), protocols::environment::EnvMover::apply(), protocols::loophash::LoopHashMoverWrapper::apply(), protocols::fold_from_loops::movers::NubInitioLoopClosureMover::apply(), protocols::pose_length_moves::InsertResMover::apply(), protocols::antibody::AntibodyModelerProtocol::apply(), protocols::splice::SpliceOutAntibody::apply(), protocols::fold_from_loops::NubInitioMover::apply(), protocols::protein_interface_design::movers::PlacementAuctionMover::apply(), protocols::moves::IfMover::apply(), protocols::protein_interface_design::movers::DockWithHotspotMover::apply(), protocols::legacy_sewing::LegacyAssemblyMover::apply(), protocols::abinitio::AbrelaxMover::apply(), protocols::splice::SpliceInAntibody::apply(), protocols::splice::SpliceIn::apply(), protocols::splice::SpliceInTail::apply(), protocols::moves::FilterMover::apply(), protocols::splice::SpliceOut::apply(), protocols::simple_moves::BBDihedralSamplerMover::apply(), protocols::simple_moves::DisulfideInsertionMover::apply(), protocols::sewing::movers::AppendAssemblyMover::apply(), protocols::antibody::constraints::ParatopeSiteConstraintMover::apply(), protocols::splice::TailSegmentMover::apply(), protocols::cyclic_peptide::SymmetricCycpepAlign::apply(), protocols::sewing::movers::LigandBindingAssemblyMover::apply(), protocols::floppy_tail::FloppyTailMover::apply(), protocols::generalized_kinematic_closure::GeneralizedKIC::apply(), protocols::rosetta_scripts::MultiplePoseMover::apply(), protocols::loops::loop_closure::kinematic_closure::KinematicWrapper::apply(), protocols::abinitio::abscript::AbscriptLoopCloserCM::apply(), protocols::protein_interface_design::movers::LoopRemodel::apply(), protocols::antibody::constraints::ParatopeEpitopeSiteConstraintMover::apply(), protocols::protein_interface_design::movers::TryRotamers::apply(), protocols::sewing::movers::AssemblyMover::apply(), protocols::ligand_docking::Transform::apply(), protocols::helical_bundle::BackboneGridSampler::apply(), protocols::simple_moves::BackboneMover::apply(), protocols::rosetta_scripts::ParsedProtocol::apply(), protocols::denovo_design::movers::BuildDeNovoBackboneMover::apply(), protocols::fldsgn::MatchResiduesMover::apply(), protocols::indexed_structure_store::movers::DirectSegmentLookupMover::apply(), protocols::splice::Splice::apply(), protocols::loophash::LoopHashDiversifier::apply(), protocols::helical_bundle::BundleGridSampler::apply(), protocols::simple_moves::RingConformationMover::apply(), protocols::carbohydrates::LinkageConformerMover::apply(), protocols::abinitio::KinematicAbinitio::apply(), protocols::carbohydrates::RingPlaneFlipMover::apply(), protocols::monte_carlo::GenericSimulatedAnnealer::apply(), protocols::comparative_modeling::LoopRelaxMover::apply(), protocols::membrane::MPQuickRelaxMover::apply(), protocols::protein_interface_design::movers::PlaceStubMover::apply(), protocols::carbohydrates::GlycanTreeModeler::apply(), protocols::monte_carlo::GenericMonteCarloMover::apply(), protocols::abinitio::FragmentSampler::apply(), protocols::moves::SequenceMover::apply(), protocols::abinitio::ClassicAbinitio::apply(), protocols::docking::DockingProtocol::apply(), protocols::moves::RandomMover::apply(), protocols::motif_grafting::movers::MotifGraftMover::apply(), protocols::abinitio::JumpingFoldConstraintsWrapper::apply(), protocols::fldsgn::BluePrintBDR::apply(), protocols::moves::CycleMover::apply(), protocols::moves::SwitchMover::apply(), protocols::forge::components::BDR::apply(), protocols::forge::remodel::RemodelMover::apply(), protocols::forge::remodel::RemodelLoopMover::apply(), protocols::hbnet::HBNet::apply(), protocols::forge::components::VarLengthBuild::apply(), protocols::rosetta_scripts::ParsedProtocol::apply_filter(), protocols::cyclic_peptide::CrosslinkerMover::asymmetric_apply(), protocols::abinitio::abscript::AbscriptLoopCloserCM::attempt_ccd(), protocols::splice::Splice::chainbreak_check(), protocols::anchored_design::AnchoredDesignMover::filter(), protocols::rosetta_scripts::ParsedProtocol::finish_protocol(), protocols::sewing::movers::LigandBindingAssemblyMover::generate_assembly(), protocols::rosetta_scripts::AdditionalOutputWrapper::generate_pose(), protocols::rosetta_scripts::MultipleOutputWrapper::generate_pose(), protocols::motif_grafting::movers::MotifGraftMover::generate_scaffold_matches(), protocols::pose_length_moves::InsertResMover::get_additional_output(), protocols::rosetta_scripts::ParsedProtocol::get_additional_output(), protocols::pose_creation::MakeJunctionsMover::get_additional_output(), protocols::pose_creation::MergePDBMover::get_additional_output(), protocols::motif_grafting::movers::MotifGraftMover::get_additional_output(), protocols::pose_length_moves::NearNativeLoopCloser::get_additional_output_with_rmsd(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC::model_loop(), protocols::match::MatcherMover::process_pose(), protocols::splice::SpliceOut::SpliceOutFilter(), protocols::splice::SpliceOut::SpliceOutRMSDFilter(), and protocols::cyclic_peptide::CrosslinkerMover::symmetric_apply().

void protocols::moves::Mover::set_native_pose ( PoseCOP  pose)
virtual

setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe

Reimplemented in protocols::moves::TrialMover, protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer, protocols::moves::MoverContainer, and protocols::stepwise::monte_carlo::StepWiseMonteCarlo.

References native_pose_.

Referenced by protocols::docking::stateless::SaneDockingProtocol::apply(), protocols::enzdes::EnzdesFixBBProtocol::apply(), protocols::loophash::Mover_LoopHashRefine::apply(), protocols::protein_interface_design::movers::BackrubDDMover::apply(), protocols::enzdes::EnzdesFlexBBProtocol::apply(), protocols::flexpep_docking::FlexPepDockingProtocol::apply(), protocols::protein_interface_design::movers::LoopMoverFromCommandLine::apply(), protocols::protein_interface_design::movers::LoopRemodel::apply(), protocols::antibody::RefineOneCDRLoop::apply(), protocols::loops::loop_mover::refine::LoopMover_Refine_CCD::apply(), protocols::comparative_modeling::LoopRelaxMover::apply(), protocols::relax::FastRelax::apply(), protocols::docking::DockingProtocol::apply(), protocols::LoopRefine::apply(), protocols::enzdes::EnzdesBaseProtocol::EnzdesBaseProtocol(), protocols::antibody::GraftCDRLoopsProtocol::finalize_setup(), protocols::antibody::AntibodyModelerProtocol::finalize_setup(), protocols::stepwise::sampler::protein::get_basic_protein_sampler(), protocols::antibody::GraftCDRLoopsProtocol::init_from_options(), protocols::antibody::AntibodyModelerProtocol::init_from_options(), protocols::docking::DockingProtocol::init_from_options(), protocols::jobdist::main_plain_mover(), protocols::flexpep_docking::FlexPepDockingProtocol::parse_my_tag(), protocols::symmetric_docking::SymDockProtocol::register_options(), protocols::relax::WorkUnit_BatchRelax::run(), protocols::jd2::set_native_in_mover(), protocols::moves::MoverContainer::set_native_pose(), protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer::set_native_pose(), protocols::moves::TrialMover::set_native_pose(), protocols::abinitio::AbrelaxApplication::setup_fold(), protocols::stepwise::modeler::StepWiseConnectionSampler::StepWiseConnectionSampler(), protocols::stepwise::modeler::StepWiseMinimizer::StepWiseMinimizer(), and protocols::jobdist::universal_main().

void protocols::moves::Mover::set_type ( std::string const &  setting)
inline

References type_.

void protocols::moves::Mover::show ( std::ostream &  output = std::cout) const
virtual

Outputs details about the Mover, including current settings.

Ideally, a child Mover should call Mover.show() and add additional information particular to that Mover.

Reimplemented in protocols::moves::PyMOLMover, protocols::rigid::RigidBodyRandomizeMover, protocols::simple_moves::LoggedFragmentMover, protocols::docking::SlideIntoContact, protocols::docking::FaDockingSlideIntoContact, protocols::antibody::design::AntibodyDesignMover, protocols::docking::DockingProtocol, protocols::docking::DockingSlideIntoContact, protocols::rigid::RigidBodyPerturbMover, protocols::carbohydrates::GlycanTreeModeler, protocols::carbohydrates::CreateGlycanSequonMover, protocols::simple_moves::ClassicFragmentMover, protocols::calc_taskop_movers::CreateSequenceMotifMover, protocols::carbohydrates::SimpleGlycosylateMover, protocols::carbohydrates::GlycanTreeSampler, protocols::antibody::AntibodyModelerProtocol, protocols::carbohydrates::LinkageConformerMover, protocols::docking::DockingLowRes, protocols::docking::TemperedDocking, protocols::minimization_packing::MinMover, protocols::rna::movers::RNAThreadAndMinimizeMover, protocols::rotamer_recovery::RotamerRecoveryMover, protocols::antibody::GraftCDRLoopsProtocol, protocols::rna::denovo::RNA_FragmentMonteCarlo, protocols::minimization_packing::PackRotamersMover, protocols::cyclic_peptide::CrosslinkerMover, protocols::canonical_sampling::HamiltonianExchange, protocols::loops::loop_closure::ccd::CCDLoopClosureMover, protocols::docking::DockMCMCycle, protocols::antibody::snugdock::SnugDock, protocols::sewing::hashing::AlignmentFileGeneratorMover, protocols::rigid::RigidBodyMover, protocols::simple_moves::BBDihedralSamplerMover, protocols::minimization_packing::RotamerTrialsMover, protocols::sewing::movers::AssemblyMover, protocols::antibody::snugdock::SnugDockProtocol, protocols::loops::loop_mover::refine::LoopMover_Refine_CCD, protocols::minimization_packing::BoltzmannRotamerMover, protocols::minimization_packing::RotamerTrialsMinMover, protocols::simple_moves::BackboneMover, protocols::simple_moves::ConvertRealToVirtualMover, protocols::docking::DockSetupMover, protocols::loops::loop_mover::refine::LoopRefineInnerCycle, protocols::simple_moves::ConvertVirtualToRealMover, protocols::loops::loop_mover::refine::ShearMinCCDTrial, protocols::antibody::CDRsMinPackMin, protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCD, protocols::minimization_packing::PertMinMover, protocols::antibody::AntibodyNumberingConverterMover, protocols::loops::loop_mover::refine::SmallMinCCDTrial, protocols::loops::loop_mover::refine::RepackTrial, protocols::sewing::movers::LigandBindingAssemblyMover, protocols::denovo_design::movers::FoldTreeFromFoldGraphMover, protocols::docking::DockingLowResEnsemble, protocols::farnesyl::InstallFarnesylMover, protocols::sewing::movers::AppendAssemblyMover, protocols::simple_moves::CopyRotamerMover, protocols::loops::loop_mover::refine::LoopMover_Refine_KIC, protocols::constraint_movers::CstInfoMover, protocols::recces::scratch::ThermalMinimizer, protocols::chemically_conjugated_docking::UBQ_GTPaseMover, protocols::farnesyl::SampleFarnesylMover, protocols::recces::scratch::ThermalSamplingMover, protocols::backbone_moves::local_backbone_mover::LocalBackboneMover, protocols::docking::ConformerSwitchMover, protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer, protocols::simple_moves::DumpSingleResidueRotamers, protocols::surface_docking::SurfaceDockingProtocol, protocols::membrane::benchmark::SampleTiltAngles, protocols::simple_moves::ReturnSidechainMover, protocols::analysis::GlycanInfoMover, protocols::minimization_packing::DisulfideOptimizationMover, protocols::rna::movers::RNAIdealizeMover, protocols::carbohydrates::RingPlaneFlipMover, protocols::cyclic_peptide::SymmetricCycpepAlign, protocols::denovo_design::movers::DeclareStructureDataCovalentBondMover, protocols::membrane::MPLipidAccessibility, protocols::aa_composition::AddHelixSequenceConstraintsMover, protocols::docking::EllipsoidalRandomizationMover, protocols::simple_moves::PoseFromPoseResourceMover, protocols::moves::FilterReportAsPoseExtraScoresMover, protocols::rna::denovo::RNA_DeNovoProtocol, protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC, protocols::membrane::HelixFromSequence, protocols::simple_moves::RingConformationMover, protocols::denovo_design::movers::BridgeChainsMover, protocols::denovo_design::movers::SealFoldTreeMover, protocols::surface_docking::CentroidRelaxMover, protocols::denovo_design::movers::AlignResiduesMover, protocols::enzymatic_movers::EnzymaticMover, protocols::rna::denovo::movers::RNA_Minimizer, protocols::simple_moves::SetupMetalsMover, protocols::denovo_design::movers::AddSegmentDataMover, protocols::denovo_design::movers::MakeAsymmetricStructureDataMover, protocols::denovo_design::movers::SetResidueAliasMover, protocols::simple_moves::SwitchResidueTypeSetMover, and protocols::membrane::benchmark::MakeCanonicalHelix.

References get_current_tag(), get_name(), and get_type().

Referenced by protocols::abinitio::AbrelaxMover::apply(), protocols::membrane::benchmark::MakeCanonicalHelix::show(), protocols::simple_moves::SwitchResidueTypeSetMover::show(), protocols::denovo_design::movers::SetResidueAliasMover::show(), protocols::denovo_design::movers::AddSegmentDataMover::show(), protocols::denovo_design::movers::MakeAsymmetricStructureDataMover::show(), protocols::denovo_design::movers::AlignResiduesMover::show(), protocols::enzymatic_movers::EnzymaticMover::show(), protocols::simple_moves::SetupMetalsMover::show(), protocols::denovo_design::movers::BridgeChainsMover::show(), protocols::denovo_design::movers::SealFoldTreeMover::show(), protocols::surface_docking::CentroidRelaxMover::show(), protocols::membrane::HelixFromSequence::show(), protocols::simple_moves::RingConformationMover::show(), protocols::moves::FilterReportAsPoseExtraScoresMover::show(), protocols::simple_moves::PoseFromPoseResourceMover::show(), protocols::aa_composition::AddHelixSequenceConstraintsMover::show(), protocols::membrane::MPLipidAccessibility::show(), protocols::cyclic_peptide::SymmetricCycpepAlign::show(), protocols::denovo_design::movers::DeclareStructureDataCovalentBondMover::show(), protocols::carbohydrates::RingPlaneFlipMover::show(), protocols::minimization_packing::DisulfideOptimizationMover::show(), protocols::rna::movers::RNAIdealizeMover::show(), protocols::analysis::GlycanInfoMover::show(), protocols::simple_moves::ReturnSidechainMover::show(), protocols::membrane::benchmark::SampleTiltAngles::show(), protocols::backbone_moves::local_backbone_mover::LocalBackboneMover::show(), protocols::simple_moves::DumpSingleResidueRotamers::show(), protocols::surface_docking::SurfaceDockingProtocol::show(), protocols::recces::scratch::ThermalSamplingMover::show(), protocols::farnesyl::SampleFarnesylMover::show(), protocols::chemically_conjugated_docking::UBQ_GTPaseMover::show(), protocols::recces::scratch::ThermalMinimizer::show(), protocols::constraint_movers::CstInfoMover::show(), protocols::sewing::movers::AppendAssemblyMover::show(), protocols::denovo_design::movers::FoldTreeFromFoldGraphMover::show(), protocols::simple_moves::CopyRotamerMover::show(), protocols::farnesyl::InstallFarnesylMover::show(), protocols::sewing::movers::LigandBindingAssemblyMover::show(), protocols::antibody::AntibodyNumberingConverterMover::show(), protocols::minimization_packing::PertMinMover::show(), protocols::simple_moves::ConvertVirtualToRealMover::show(), protocols::simple_moves::ConvertRealToVirtualMover::show(), protocols::simple_moves::BackboneMover::show(), core::fragment::SecstructSRFD::show(), protocols::sewing::movers::AssemblyMover::show(), protocols::simple_moves::BBDihedralSamplerMover::show(), protocols::sewing::hashing::AlignmentFileGeneratorMover::show(), protocols::cyclic_peptide::CrosslinkerMover::show(), protocols::rna::movers::RNAThreadAndMinimizeMover::show(), protocols::carbohydrates::LinkageConformerMover::show(), protocols::carbohydrates::GlycanTreeSampler::show(), protocols::carbohydrates::SimpleGlycosylateMover::show(), protocols::calc_taskop_movers::CreateSequenceMotifMover::show(), protocols::simple_moves::ClassicFragmentMover::show(), protocols::carbohydrates::CreateGlycanSequonMover::show(), protocols::carbohydrates::GlycanTreeModeler::show(), core::fragment::DownJumpSRFD::show(), protocols::moves::PyMOLMover::show(), and protocols::splice::SpliceOut::tail_mover().

virtual void protocols::moves::Mover::test_move ( Pose pose)
inlinevirtual

: Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying

Reimplemented in protocols::simple_moves::sidechain_moves::SidechainMover, protocols::simple_moves::BackboneMover, protocols::simple_moves::ScoreMover, protocols::contact_map::ContactMap, and protocols::moves::NullMover.

References apply().

std::string const& protocols::moves::Mover::type ( ) const
inline

References type_.

Referenced by protocols::simple_moves::a3b_hbs::A3BHbsPatcher::A3BHbsPatcher(), protocols::dna::DnaInterfacePacker::add_complementary_sequence(), protocols::sewing::hashing::AlignmentFileGeneratorMover::add_pose_segments_to_segment_vector(), protocols::anchored_design::AnchoredDesignMover::AnchoredDesignMover(), protocols::anchored_design::AnchoredPerturbMover::AnchoredPerturbMover(), protocols::anchored_design::AnchoredRefineMover::AnchoredRefineMover(), protocols::simple_moves::BackboneMover::angle_max(), protocols::antibody::design::AntibodyDesignProtocol::AntibodyDesignProtocol(), protocols::antibody_legacy::AntibodyModeler::AntibodyModeler(), protocols::enzdes::BackboneSampler::apply(), protocols::protein_interface_design::movers::BackrubDDMover::apply(), protocols::md::CartesianMD::apply(), protocols::moves::JumpOutMover::apply(), protocols::simple_moves::BackboneMover::apply(), protocols::minimization_packing::BoltzmannRotamerMover::apply(), protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMover::apply(), protocols::simple_moves::sidechain_moves::SidechainMCMover::apply(), protocols::moves::SequenceMover::apply(), protocols::moves::RandomMover::apply(), protocols::simple_moves::BackboneMover::BackboneMover(), protocols::simple_moves::BBConRotMover::BBConRotMover(), protocols::simple_moves::BBG8T3AMover::BBG8T3AMover(), protocols::minimization_packing::BoltzmannRotamerMover::BoltzmannRotamerMover(), protocols::simple_moves::chiral::ChiralMover::ChiralMover(), protocols::hybridization::ChunkTrialMover::ChunkTrialMover(), protocols::abinitio::ClassicAbinitio::ClassicAbinitio(), protocols::ligand_docking::ComputeLigandRDF::compute_rdf(), protocols::docking::ConformerSwitchMover::ConformerSwitchMover(), protocols::abinitio::ConstraintFragmentSampler::ConstraintFragmentSampler(), protocols::simple_moves::CoupledMover::CoupledMover(), protocols::denovo_design::movers::BuildDeNovoBackboneMover::create_loops(), protocols::protein_interface_design::movers::TaskAwareCsts::cst_type(), protocols::docking::DockingHighResLegacy::DockingHighResLegacy(), protocols::docking::DockingLowResEnsemble::DockingLowResEnsemble(), protocols::docking::DockMCMCycle::DockMCMCycle(), protocols::minimization_packing::EnergyCutRotamerTrialsMinMover::EnergyCutRotamerTrialsMinMover(), protocols::minimization_packing::EnergyCutRotamerTrialsMover::EnergyCutRotamerTrialsMover(), protocols::enzdes::EnzdesBaseProtocol::EnzdesBaseProtocol(), protocols::symmetry::FaSymDockingSlideTogether::FaSymDockingSlideTogether(), protocols::floppy_tail::FloppyTailMover::FloppyTailMover(), protocols::abinitio::FoldConstraints::FoldConstraints(), protocols::simple_moves::FragmentMover::FragmentMover(), protocols::abinitio::FragmentSampler::FragmentSampler(), protocols::simple_moves::AddCavitiesMover::get_closest_heavy_atom(), protocols::antibody::snugdock::SnugDockProtocol::get_name(), protocols::hydrate::Hydrate::get_name(), protocols::loops::loop_mover::refine::LoopRefineInnerCycle::get_name(), protocols::docking::DockingLowRes::get_name(), protocols::simple_moves::hbs::HbsPatcher::HbsPatcher(), protocols::hydrate::Hydrate::Hydrate(), protocols::loops::loop_mover::refine::LoopMover_Refine_KIC::init(), protocols::antibody::H3CterInsert::init(), protocols::docking::DockMCMProtocol::init(), protocols::simple_moves::BBGaussianMover::init(), protocols::surface_docking::CentroidRelaxMover::init(), protocols::surface_docking::SurfaceDockingProtocol::init(), protocols::enzymatic_movers::GlycosyltransferaseMover::init(), protocols::loops::loop_mover::refine::RepackTrial::init(), protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer::init(), protocols::antibody::snugdock::SnugDockProtocol::init(), protocols::loops::loop_mover::refine::ShearMinCCDTrial::init(), protocols::loops::loop_mover::refine::SmallMinCCDTrial::init(), protocols::loops::loop_mover::refine::LoopRefineInnerCycle::init(), protocols::simple_moves::RingConformationMover::init(), protocols::antibody::snugdock::SnugDock::init(), protocols::antibody::GraftCDRLoopsProtocol::init(), protocols::carbohydrates::RingPlaneFlipMover::init(), protocols::antibody::ModelCDRH3::init(), protocols::docking::DockingHighRes::init(), protocols::docking::DockingLowRes::init(), protocols::antibody::AntibodyModelerProtocol::init(), protocols::enzymatic_movers::EnzymaticMover::init(), protocols::loops::loop_closure::ccd::CCDLoopClosureMover::init(), protocols::hybridization::InsertChunkMover::InsertChunkMover(), protocols::analysis::InterfaceAnalyzerMover::InterfaceAnalyzerMover(), protocols::abinitio::JumpingFoldConstraintsWrapper::JumpingFoldConstraintsWrapper(), protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMover::JumpRotamerSidechainMover(), protocols::abinitio::KinematicAbinitio::KinematicAbinitio(), protocols::analysis::LoopAnalyzerMover::LoopAnalyzerMover(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCD::LoopMover_Perturb_CCD(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC::LoopMover_Perturb_KIC(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD::LoopMover_Perturb_QuickCCD(), protocols::loops::loop_mover::refine::LoopMover_Refine_Backrub::LoopMover_Refine_Backrub(), protocols::loops::loop_mover::refine::LoopMover_Refine_CCD::LoopMover_Refine_CCD(), protocols::loop_build::LoopMover_SlidingWindow::LoopMover_SlidingWindow(), protocols::ligand_docking::HighResDocker::make_packer_task_from_vector(), protocols::moves::MCShowMover::MCShowMover(), protocols::dna::DnaInterfacePacker::measure_bp_specificities(), protocols::abinitio::MembraneAbinitio::MembraneAbinitio(), protocols::canonical_sampling::TrialCounterObserver::observe_after_metropolis(), protocols::simple_moves::oop::OopDPuckMinusMover::OopDPuckMinusMover(), protocols::simple_moves::oop::OopDPuckPlusMover::OopDPuckPlusMover(), protocols::simple_moves::oop::OopMover::OopMover(), protocols::simple_moves::oop::OopPatcher::OopPatcher(), protocols::simple_moves::oop::OopPuckMinusMover::OopPuckMinusMover(), protocols::simple_moves::oop::OopPuckPlusMover::OopPuckPlusMover(), protocols::simple_moves::oop::OopRandomPuckMover::OopRandomPuckMover(), protocols::simple_moves::oop::OopRandomSmallMover::OopRandomSmallMover(), protocols::denovo_design::movers::BuildDeNovoBackboneMover::parse_filters(), protocols::denovo_design::movers::BuildDeNovoBackboneMover::parse_movers(), protocols::canonical_sampling::MetricRecorder::parse_my_tag(), protocols::moves::PDBDumpMover::PDBDumpMover(), protocols::simple_moves::PeptideStapleMover::PeptideStapleMover(), protocols::simple_moves::sidechain_moves::PerturbChiSidechainMover::PerturbChiSidechainMover(), protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMover::PerturbRotamerSidechainMover(), protocols::moves::ProfilerMover::ProfilerMover(), protocols::rna::denovo::movers::RNA_FragmentMover::random_fragment_insertion(), protocols::anchored_design::AnchoredDesignMover::randomize_input_sequence(), protocols::ligand_docking::MinimizeBackbone::restrain_protein_Calphas(), protocols::ligand_docking::restrict_to_protein_residues(), protocols::simple_moves::ReturnSidechainMover::ReturnSidechainMover(), protocols::rigid::RigidBodyDeterministicSpinMover::RigidBodyDeterministicSpinMover(), protocols::rigid::RigidBodyDofPerturbMover::RigidBodyDofPerturbMover(), protocols::rigid::RigidBodyDofRandomizeMover::RigidBodyDofRandomizeMover(), protocols::rigid::RigidBodyDofRandomTransMover::RigidBodyDofRandomTransMover(), protocols::rigid::RigidBodyDofSeqPerturbMover::RigidBodyDofSeqPerturbMover(), protocols::rigid::RigidBodyDofSeqRandomizeMover::RigidBodyDofSeqRandomizeMover(), protocols::rigid::RigidBodyDofSeqTransMover::RigidBodyDofSeqTransMover(), protocols::rigid::RigidBodyDofTransMover::RigidBodyDofTransMover(), protocols::rigid::RigidBodyPerturbNoCenterMover::RigidBodyPerturbNoCenterMover(), protocols::rigid::RigidBodyRandomizeMover::RigidBodyRandomizeMover(), protocols::rigid::RigidBodySpinMover::RigidBodySpinMover(), protocols::rigid::RigidBodyTiltMover::RigidBodyTiltMover(), protocols::rigid::RigidBodyTransMover::RigidBodyTransMover(), protocols::rigid::RollMover::RollMover(), protocols::minimization_packing::RotamerTrialsMinMover::RotamerTrialsMinMover(), protocols::minimization_packing::RotamerTrialsMover::RotamerTrialsMover(), protocols::rigid::RotateJumpAxisMover::RotateJumpAxisMover(), protocols::cyclic_peptide::TryDisulfPermutations::set_mintype(), protocols::abinitio::abscript::FragmentCM::set_mover(), protocols::monte_carlo::GenericMonteCarloMover::set_sampletype(), protocols::surface_docking::FullatomRelaxMover::setup_defaults(), protocols::carbohydrates::RingPlaneFlipMover::setup_movable_torsion_pairs(), protocols::simple_moves::ShearMover::ShearMover(), protocols::simple_moves::ShortBackrubMover::ShortBackrubMover(), protocols::docking::SidechainMinMover::SidechainMinMover(), protocols::simple_moves::SmallMover::SmallMover(), protocols::surface_docking::SurfaceOrientMover::SurfaceOrientMover(), protocols::symmetric_docking::SymDockingHiRes::SymDockingHiRes(), protocols::symmetry::SymDockingInitialPerturbation::SymDockingInitialPerturbation(), protocols::symmetric_docking::SymDockingLowRes::SymDockingLowRes(), protocols::symmetry::SymDockingSlideIntoContact::SymDockingSlideIntoContact(), protocols::splice::TailSegmentMover::TailSegmentMover(), protocols::minimization_packing::TaskAwareMinMover::TaskAwareMinMover(), protocols::simple_moves::TorsionDOFMover::TorsionDOFMover(), protocols::simple_moves::triazolamer::TriazolamerMover::TriazolamerMover(), protocols::simple_moves::triazolamer::TriazolamerRandomSmallMover::TriazolamerRandomSmallMover(), protocols::rigid::UniformSphereTransMover::UniformSphereTransMover(), protocols::backrub::BackrubSidechainMover::update_type(), protocols::simple_moves::sidechain_moves::SidechainMover::update_type(), protocols::hybridization::WeightedFragmentSmoothTrialMover::WeightedFragmentSmoothTrialMover(), and protocols::hybridization::WeightedFragmentTrialMover::WeightedFragmentTrialMover().

void protocols::moves::Mover::type ( const std::string &  type_in)
inline

References type_.

Member Data Documentation

jobdist::BasicJobCOP protocols::moves::Mover::current_job_
private

this field can be NULL or it refers to the current JOB this mover is working on.

Referenced by get_current_job(), operator=(), and set_current_job().

std::string protocols::moves::Mover::current_tag_
private
Strings protocols::moves::Mover::info_
private

miscellaneous info: optional notes about mover results. Fed to Job by JobDistributor (jd2), allowing JobOutputters to optionally report this information in some way.

Referenced by clear_info(), and info().

PoseCOP protocols::moves::Mover::input_pose_
private
MoverStatus protocols::moves::Mover::last_status_
private

used to track if movers fail their filters - jobdist::BasicJob Distributor queries for this value

Referenced by get_last_move_status(), operator=(), reset_status(), and set_last_move_status().

PoseCOP protocols::moves::Mover::native_pose_
private
std::string protocols::moves::Mover::type_
private

Referenced by get_type(), operator=(), set_type(), and type().


The documentation for this class was generated from the following files: