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protocols::protein_interface_design::filters::AverageDegreeFilter Class Reference

#include <AverageDegreeFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::AverageDegreeFilter:
Inheritance graph
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Public Member Functions

 AverageDegreeFilter ()
 default ctor More...
 
bool apply (core::pose::Pose const &pose) const override
 Constructor with a single target residue. More...
 
void report (std::ostream &out, core::pose::Pose const &pose) const override
 
core::Real report_sm (core::pose::Pose const &pose) const override
 used to report filter internals through a score or silent file More...
 
protocols::filters::FilterOP clone () const override
 
protocols::filters::FilterOP fresh_instance () const override
 
core::Real compute (core::pose::Pose const &pose) const
 
 ~AverageDegreeFilter () override
 
core::pack::task::TaskFactoryOP task_factory () const
 
void task_factory (core::pack::task::TaskFactoryOP task_factory)
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
 Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
 
core::Real threshold () const
 
void threshold (core::Real threshold)
 
core::Real distance_threshold () const
 
void distance_threshold (core::Real const d)
 
std::string name () const override
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
 ~Filter () override
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual bool filter_provides_citation_info () const
 Does this filter provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool filter_is_unpublished () const
 Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static std::string class_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Private Types

typedef protocols::filters::Filter parent
 

Private Attributes

core::pack::task::TaskFactoryOP task_factory_
 
core::Real threshold_
 
core::Real distance_threshold_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::AverageDegreeFilter::AverageDegreeFilter ( )

default ctor

protocols::protein_interface_design::filters::AverageDegreeFilter::~AverageDegreeFilter ( )
overridedefault

Member Function Documentation

bool protocols::protein_interface_design::filters::AverageDegreeFilter::apply ( core::pose::Pose const &  pose) const
overridevirtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

References compute(), and threshold().

std::string protocols::protein_interface_design::filters::AverageDegreeFilter::class_name ( )
static
protocols::filters::FilterOP protocols::protein_interface_design::filters::AverageDegreeFilter::clone ( ) const
overridevirtual
core::Real protocols::protein_interface_design::filters::AverageDegreeFilter::compute ( core::pose::Pose const &  pose) const
core::Real protocols::protein_interface_design::filters::AverageDegreeFilter::distance_threshold ( ) const

References distance_threshold_.

Referenced by compute(), and parse_my_tag().

void protocols::protein_interface_design::filters::AverageDegreeFilter::distance_threshold ( core::Real const  d)

References distance_threshold_.

protocols::filters::FilterOP protocols::protein_interface_design::filters::AverageDegreeFilter::fresh_instance ( ) const
overridevirtual
std::string protocols::protein_interface_design::filters::AverageDegreeFilter::name ( ) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::protein_interface_design::filters::AverageDegreeFilter::parse_my_tag ( utility::tag::TagCOP  ,
basic::datacache::DataMap &   
)
overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References distance_threshold(), core::pack::task::parse_task_operations(), task_factory(), threshold(), and protocols::protein_interface_design::filters::TR().

void protocols::protein_interface_design::filters::AverageDegreeFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::protein_interface_design::filters::AverageDegreeFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::protein_interface_design::filters::AverageDegreeFilter::report_sm ( core::pose::Pose const &  ) const
overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::AverageDegreeFilter::task_factory ( ) const

References task_factory_.

Referenced by compute(), parse_my_tag(), and task_factory().

void protocols::protein_interface_design::filters::AverageDegreeFilter::task_factory ( core::pack::task::TaskFactoryOP  task_factory)

References task_factory(), and task_factory_.

core::Real protocols::protein_interface_design::filters::AverageDegreeFilter::threshold ( ) const

References threshold_.

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::filters::AverageDegreeFilter::threshold ( core::Real  threshold)

Member Data Documentation

core::Real protocols::protein_interface_design::filters::AverageDegreeFilter::distance_threshold_
private

Referenced by distance_threshold().

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::AverageDegreeFilter::task_factory_
private

Referenced by task_factory().

core::Real protocols::protein_interface_design::filters::AverageDegreeFilter::threshold_
private

Referenced by threshold().


The documentation for this class was generated from the following files: