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Public Member Functions | Private Attributes | List of all members
protocols::rotamer_recovery::RotamerRecovery Class Reference

#include <RotamerRecovery.hh>

Inheritance diagram for protocols::rotamer_recovery::RotamerRecovery:
Inheritance graph
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Public Member Functions

 RotamerRecovery ()
 default constructor More...
 
 RotamerRecovery (RRProtocolOP protocol, RRComparerOP comparer, RRReporterOP reporter)
 specify comparer and reporter More...
 
 ~RotamerRecovery () override
 destructor More...
 
 RotamerRecovery (RotamerRecovery const &src)
 copy constructor More...
 
virtual void reset_recovery ()
 
virtual void register_options () const
 
core::Real run (core::pose::Pose const &pose, core::scoring::ScoreFunction const &score_function, core::pack::task::PackerTask const &packer_task)
 
void init_rotamer_recovery_with_options (RotamerRecovery &rotamer_recovery)
 
void init_with_options ()
 
void set_ignore_unrecognized_res (bool const ignore_unrecognized_res)
 
bool get_ignore_unrecognized_res ()
 
virtual void show (std::ostream &out) const
 
virtual void show ()
 
virtual core::Real recovery_rate () const
 

Private Attributes

RRProtocolOP protocol_
 
RRComparerOP comparer_
 
RRReporterOP reporter_
 
bool ignore_unrecognized_res_
 

Constructor & Destructor Documentation

protocols::rotamer_recovery::RotamerRecovery::RotamerRecovery ( )

default constructor

protocols::rotamer_recovery::RotamerRecovery::RotamerRecovery ( RRProtocolOP  protocol,
RRComparerOP  comparer,
RRReporterOP  reporter 
)

specify comparer and reporter

References comparer_, protocol_, and reporter_.

protocols::rotamer_recovery::RotamerRecovery::~RotamerRecovery ( )
overridedefault

destructor

protocols::rotamer_recovery::RotamerRecovery::RotamerRecovery ( RotamerRecovery const &  src)

copy constructor

Member Function Documentation

bool protocols::rotamer_recovery::RotamerRecovery::get_ignore_unrecognized_res ( )
void protocols::rotamer_recovery::RotamerRecovery::init_rotamer_recovery_with_options ( RotamerRecovery rotamer_recovery)
void protocols::rotamer_recovery::RotamerRecovery::init_with_options ( )
Real protocols::rotamer_recovery::RotamerRecovery::recovery_rate ( ) const
virtual

References reporter_.

void protocols::rotamer_recovery::RotamerRecovery::register_options ( ) const
virtual
void protocols::rotamer_recovery::RotamerRecovery::reset_recovery ( )
virtual

References reporter_.

Real protocols::rotamer_recovery::RotamerRecovery::run ( core::pose::Pose const &  pose,
core::scoring::ScoreFunction const &  score_function,
core::pack::task::PackerTask const &  packer_task 
)
void protocols::rotamer_recovery::RotamerRecovery::set_ignore_unrecognized_res ( bool const  ignore_unrecognized_res)
void protocols::rotamer_recovery::RotamerRecovery::show ( std::ostream &  out) const
virtual

References reporter_.

void protocols::rotamer_recovery::RotamerRecovery::show ( )
virtual

References reporter_.

Member Data Documentation

RRComparerOP protocols::rotamer_recovery::RotamerRecovery::comparer_
private

Referenced by RotamerRecovery(), and run().

bool protocols::rotamer_recovery::RotamerRecovery::ignore_unrecognized_res_
private
RRProtocolOP protocols::rotamer_recovery::RotamerRecovery::protocol_
private

Referenced by RotamerRecovery(), and run().

RRReporterOP protocols::rotamer_recovery::RotamerRecovery::reporter_
private

The documentation for this class was generated from the following files: