protocols::stepwise::modeler::protein::loop_close Namespace Reference

Classes
class	StepWiseProteinCCD_Closer
class	StepWiseProteinCCD_MultiPoseCloser
class	StepWiseProteinKIC_LoopBridger

Typedefs
typedef utility::pointer::shared_ptr< StepWiseProteinCCD_Closer >	StepWiseProteinCCD_CloserOP
typedef utility::pointer::shared_ptr< StepWiseProteinCCD_Closer const >	StepWiseProteinCCD_CloserCOP
typedef utility::pointer::shared_ptr< StepWiseProteinCCD_MultiPoseCloser >	StepWiseProteinCCD_MultiPoseCloserOP
typedef utility::pointer::shared_ptr< StepWiseProteinCCD_MultiPoseCloser const >	StepWiseProteinCCD_MultiPoseCloserCOP

Functions
void	kic_close_loops_in_samples (sampler::StepWiseSamplerSizedOP &sampler, core::pose::Pose const &pose, working_parameters::StepWiseWorkingParametersCOP working_parameters_, options::StepWiseModelerOptionsCOP options_)
void	enable_sampling_of_loop_takeoff (sampler::StepWiseSamplerSizedOP &sampler, pose::Pose &pose, working_parameters::StepWiseWorkingParametersCOP working_parameters_, options::StepWiseModelerOptionsCOP options_)

Typedef Documentation

StepWiseProteinCCD_CloserCOP

typedef utility::pointer::shared_ptr< StepWiseProteinCCD_Closer const > protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_CloserCOP

StepWiseProteinCCD_CloserOP

typedef utility::pointer::shared_ptr< StepWiseProteinCCD_Closer > protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_CloserOP

StepWiseProteinCCD_MultiPoseCloserCOP

typedef utility::pointer::shared_ptr< StepWiseProteinCCD_MultiPoseCloser const > protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloserCOP

StepWiseProteinCCD_MultiPoseCloserOP

typedef utility::pointer::shared_ptr< StepWiseProteinCCD_MultiPoseCloser > protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloserOP

Function Documentation

enable_sampling_of_loop_takeoff()

void protocols::stepwise::modeler::protein::loop_close::enable_sampling_of_loop_takeoff	(	sampler::StepWiseSamplerSizedOP &	sampler,
		pose::Pose &	pose,
		working_parameters::StepWiseWorkingParametersCOP	working_parameters_,
		options::StepWiseModelerOptionsCOP	options_
	)

References protocols::stepwise::modeler::protein::StepWiseProteinBackboneSampler::apply(), protocols::stepwise::modeler::protein::StepWiseProteinBackboneSampler::main_chain_torsion_set_lists_real(), protocols::stepwise::modeler::protein::StepWiseProteinBackboneSampler::set_fixed_residues(), protocols::stepwise::modeler::protein::StepWiseProteinBackboneSampler::set_moving_residues(), protocols::stepwise::modeler::protein::StepWiseProteinBackboneSampler::set_n_sample(), core::pose::Pose::size(), protocols::TR(), and protocols::stepwise::modeler::protein::StepWiseProteinBackboneSampler::which_torsions().

Referenced by kic_close_loops_in_samples().

kic_close_loops_in_samples()

void protocols::stepwise::modeler::protein::loop_close::kic_close_loops_in_samples	(	sampler::StepWiseSamplerSizedOP &	sampler,
		core::pose::Pose const &	pose,
		working_parameters::StepWiseWorkingParametersCOP	working_parameters_,
		options::StepWiseModelerOptionsCOP	options_
	)

References protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger::apply(), core::pose::Pose::dump_pdb(), enable_sampling_of_loop_takeoff(), core::scoring::loop_close, protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger::main_chain_torsion_set_lists(), protocols::TR(), and protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger::which_torsions().

Referenced by protocols::stepwise::modeler::StepWiseConnectionSampler::initialize_protein_bond_sampler().