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protocols::stepwise::modeler::packer Namespace Reference

Classes

class  SideChainCopier
 
class  StepWiseMasterPacker
 
class  StepWisePacker
 

Typedefs

typedef
utility::pointer::shared_ptr
< SideChainCopier
SideChainCopierOP
 
typedef
utility::pointer::shared_ptr
< SideChainCopier const > 
SideChainCopierCOP
 
typedef
utility::pointer::shared_ptr
< StepWiseMasterPacker
StepWiseMasterPackerOP
 
typedef
utility::pointer::shared_ptr
< StepWiseMasterPacker const > 
StepWiseMasterPackerCOP
 
typedef
utility::pointer::shared_ptr
< StepWisePacker
StepWisePackerOP
 
typedef
utility::pointer::shared_ptr
< StepWisePacker const > 
StepWisePackerCOP
 

Functions

StepWisePackerOP get_packer (core::scoring::ScoreFunctionCOP pack_scorefxn, utility::vector1< core::Size > const &moving_res_list, protocols::stepwise::modeler::options::StepWiseModelerOptionsCOP options)
 
utility::vector1< core::Sizefigure_out_working_interface_res (core::pose::Pose const &pose, core::Size const working_moving_res, bool const pack_protein_side_chains)
 
utility::vector1< core::Sizefigure_out_working_interface_res (core::pose::Pose const &pose, utility::vector1< core::Size > const &working_moving_res_list, bool const pack_protein_side_chains)
 
bool check_o2prime_contact (pose::Pose const &pose, core::Size const i, core::Size const j)
 
void figure_out_working_interface_res (core::pose::Pose const &pose, core::Size const working_moving_res, utility::vector1< bool > &interface_res, utility::vector1< utility::vector1< bool > > &checked_pair, bool const pack_protein_side_chains)
 

Typedef Documentation

typedef utility::pointer::shared_ptr< SideChainCopier const > protocols::stepwise::modeler::packer::SideChainCopierCOP
typedef utility::pointer::shared_ptr< StepWisePacker const > protocols::stepwise::modeler::packer::StepWisePackerCOP

Function Documentation

bool protocols::stepwise::modeler::packer::check_o2prime_contact ( pose::Pose const &  pose,
core::Size const  i,
core::Size const  j 
)
utility::vector1< core::Size > protocols::stepwise::modeler::packer::figure_out_working_interface_res ( core::pose::Pose const &  pose,
core::Size const  working_moving_res,
bool const  pack_protein_side_chains 
)
utility::vector1< core::Size > protocols::stepwise::modeler::packer::figure_out_working_interface_res ( core::pose::Pose const &  pose,
utility::vector1< core::Size > const &  working_moving_res_list,
bool const  pack_protein_side_chains 
)
void protocols::stepwise::modeler::packer::figure_out_working_interface_res ( core::pose::Pose const &  pose,
core::Size const  working_moving_res,
utility::vector1< bool > &  interface_res,
utility::vector1< utility::vector1< bool > > &  checked_pair,
bool const  pack_protein_side_chains 
)
StepWisePackerOP protocols::stepwise::modeler::packer::get_packer ( core::scoring::ScoreFunctionCOP  pack_scorefxn,
utility::vector1< core::Size > const &  moving_res_list,
protocols::stepwise::modeler::options::StepWiseModelerOptionsCOP  options 
)