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protocols::antibody::task_operations::DisableCDRsOperation Class Reference

TaskOperation to Disable Packing and/or design of a set of CDRs. By default, disables both Packing and Design of all CDRs. More...

#include <DisableCDRsOperation.hh>

Inheritance diagram for protocols::antibody::task_operations::DisableCDRsOperation:
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Public Member Functions

 DisableCDRsOperation ()
 Default Constructor. More...
 
 DisableCDRsOperation (AntibodyInfoCOP ab_info)
 Regular Constructor. More...
 
 DisableCDRsOperation (AntibodyInfoCOP ab_info, utility::vector1< bool > const &cdrs)
 Constructor Specifying set of cdrs to use. More...
 
 DisableCDRsOperation (AntibodyInfoCOP ab_info, utility::vector1< bool > const &cdrs, bool disable_packing_and_design)
 Constructor Specifying set of cdrs and what to disable. More...
 
 ~DisableCDRsOperation () override
 
 DisableCDRsOperation (DisableCDRsOperation const &src)
 
core::pack::task::operation::TaskOperationOP clone () const override
 Create another task operation of the type matching the most-derived version of the class. More...
 
void parse_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
 Configure from a RosettaScripts XML tag. More...
 
void apply (core::pose::Pose const &pose, core::pack::task::PackerTask &task) const override
 Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
 
void set_cdrs (utility::vector1< bool > const &cdrs)
 Set the CDRs we will be disabling - 6/8 long vector corresponding to Enum. More...
 
void set_cdr_only (CDRNameEnum cdr)
 Set only a single CDR to disable. More...
 
void set_disable_packing_and_design (bool disable_packing_and_design)
 Set to disable packing and design, or only just design. More...
 
void set_defaults ()
 
- Public Member Functions inherited from core::pack::task::operation::TaskOperation
 ~TaskOperation () override
 
virtual void provide_citation_info (basic::citation_manager::CitationCollectionList &) const
 Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...
 

Static Public Member Functions

static std::string keyname ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Private Attributes

AntibodyInfoCOP ab_info_
 
utility::vector1< boolcdrs_
 
bool disable_packing_and_design_
 
AntibodyNumberingSchemeEnum numbering_scheme_
 Needed for default and RS constructor. More...
 
CDRDefinitionEnum cdr_definition_
 

Additional Inherited Members

- Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP TagCOP
 
typedef basic::datacache::DataMap DataMap
 
typedef pose::Pose Pose
 

Detailed Description

TaskOperation to Disable Packing and/or design of a set of CDRs. By default, disables both Packing and Design of all CDRs.

See options for setting specific CDRs and whether to only disable design.

Constructor & Destructor Documentation

protocols::antibody::task_operations::DisableCDRsOperation::DisableCDRsOperation ( )

Default Constructor.

References set_defaults().

protocols::antibody::task_operations::DisableCDRsOperation::DisableCDRsOperation ( AntibodyInfoCOP  ab_info)

Regular Constructor.

References set_defaults().

protocols::antibody::task_operations::DisableCDRsOperation::DisableCDRsOperation ( AntibodyInfoCOP  ab_info,
utility::vector1< bool > const &  cdrs 
)

Constructor Specifying set of cdrs to use.

References set_cdrs(), and set_defaults().

protocols::antibody::task_operations::DisableCDRsOperation::DisableCDRsOperation ( AntibodyInfoCOP  ab_info,
utility::vector1< bool > const &  cdrs,
bool  disable_packing_and_design 
)

Constructor Specifying set of cdrs and what to disable.

References disable_packing_and_design_, set_cdrs(), and set_defaults().

protocols::antibody::task_operations::DisableCDRsOperation::~DisableCDRsOperation ( )
overridedefault
protocols::antibody::task_operations::DisableCDRsOperation::DisableCDRsOperation ( DisableCDRsOperation const &  src)

References ab_info_.

Member Function Documentation

void protocols::antibody::task_operations::DisableCDRsOperation::apply ( core::pose::Pose const &  ,
core::pack::task::PackerTask  
) const
overridevirtual
core::pack::task::operation::TaskOperationOP protocols::antibody::task_operations::DisableCDRsOperation::clone ( ) const
overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

std::string protocols::antibody::task_operations::DisableCDRsOperation::keyname ( )
static
void protocols::antibody::task_operations::DisableCDRsOperation::parse_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap &   
)
overridevirtual
void protocols::antibody::task_operations::DisableCDRsOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::antibody::task_operations::DisableCDRsOperation::set_cdr_only ( CDRNameEnum  cdr)

Set only a single CDR to disable.

References protocols::antibody::CDRNameEnum_proto_total, and cdrs_.

void protocols::antibody::task_operations::DisableCDRsOperation::set_cdrs ( utility::vector1< bool > const &  cdrs)

Set the CDRs we will be disabling - 6/8 long vector corresponding to Enum.

References protocols::antibody::CDRNameEnum_proto_total, and cdrs_.

Referenced by DisableCDRsOperation().

void protocols::antibody::task_operations::DisableCDRsOperation::set_defaults ( )
void protocols::antibody::task_operations::DisableCDRsOperation::set_disable_packing_and_design ( bool  disable_packing_and_design)

Set to disable packing and design, or only just design.

References disable_packing_and_design_.

Member Data Documentation

AntibodyInfoCOP protocols::antibody::task_operations::DisableCDRsOperation::ab_info_
private

Referenced by apply(), and DisableCDRsOperation().

CDRDefinitionEnum protocols::antibody::task_operations::DisableCDRsOperation::cdr_definition_
private

Referenced by apply(), parse_tag(), and set_defaults().

utility::vector1<bool> protocols::antibody::task_operations::DisableCDRsOperation::cdrs_
private
bool protocols::antibody::task_operations::DisableCDRsOperation::disable_packing_and_design_
private
AntibodyNumberingSchemeEnum protocols::antibody::task_operations::DisableCDRsOperation::numbering_scheme_
private

Needed for default and RS constructor.

Referenced by apply(), parse_tag(), and set_defaults().


The documentation for this class was generated from the following files: