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protocols::task_operations::PreventResiduesFromRepackingOperation Class Reference

#include <PreventResiduesFromRepackingOperation.hh>

Inheritance diagram for protocols::task_operations::PreventResiduesFromRepackingOperation:
Inheritance graph
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Public Types

typedef RestrictOperationsBase parent
 
- Public Types inherited from protocols::task_operations::RestrictOperationsBase
typedef
core::pack::task::operation::TaskOperation 
TaskOperation
 
typedef
core::pack::task::operation::TaskOperationOP 
TaskOperationOP
 
typedef TaskOperation parent
 
- Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP TagCOP
 
typedef basic::datacache::DataMap DataMap
 
typedef pose::Pose Pose
 

Public Member Functions

 PreventResiduesFromRepackingOperation ()
 
 PreventResiduesFromRepackingOperation (utility::vector1< core::Size > const &residues)
 
utility::vector1< core::Sizeget_residues () const
 
void set_residues (utility::vector1< core::Size > residues_vec)
 
 ~PreventResiduesFromRepackingOperation () override
 
TaskOperationOP clone () const override
 Create another task operation of the type matching the most-derived version of the class. More...
 
void apply (core::pose::Pose const &, core::pack::task::PackerTask &) const override
 Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
 
void parse_tag (TagCOP, DataMap &) override
 Used to parse an xml-like tag to load parameters and properties. More...
 
std::string reference_pdb_id () const
 
void reference_pdb_id (std::string const &s)
 
- Public Member Functions inherited from protocols::task_operations::RestrictOperationsBase
 RestrictOperationsBase ()
 
 ~RestrictOperationsBase () override
 
- Public Member Functions inherited from core::pack::task::operation::TaskOperation
 ~TaskOperation () override
 
virtual bool task_operation_provides_citation_info () const
 Does this task operation provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool task_operation_is_unpublished () const
 Does this task_operation indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 
static std::string keyname ()
 

Private Attributes

std::string unparsed_residues_
 
utility::vector1< core::Sizeresidues_
 
std::string reference_pdb_id_
 

Additional Inherited Members

- Protected Member Functions inherited from protocols::task_operations::RestrictOperationsBase
void run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
 this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...
 

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::task_operations::PreventResiduesFromRepackingOperation::PreventResiduesFromRepackingOperation ( )
default
protocols::task_operations::PreventResiduesFromRepackingOperation::PreventResiduesFromRepackingOperation ( utility::vector1< core::Size > const &  residues)
protocols::task_operations::PreventResiduesFromRepackingOperation::~PreventResiduesFromRepackingOperation ( )
overridedefault

Member Function Documentation

void protocols::task_operations::PreventResiduesFromRepackingOperation::apply ( core::pose::Pose const &  ,
core::pack::task::PackerTask  
) const
overridevirtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements protocols::task_operations::RestrictOperationsBase.

References core::pack::task::operation::PreventRepacking::apply(), core::pack::task::operation::PreventRepacking::include_residue(), and residues_.

core::pack::task::operation::TaskOperationOP protocols::task_operations::PreventResiduesFromRepackingOperation::clone ( ) const
overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements protocols::task_operations::RestrictOperationsBase.

utility::vector1< core::Size > protocols::task_operations::PreventResiduesFromRepackingOperation::get_residues ( ) const

References residues_.

static std::string protocols::task_operations::PreventResiduesFromRepackingOperation::keyname ( )
inlinestatic
void protocols::task_operations::PreventResiduesFromRepackingOperation::parse_tag ( TagCOP  tag,
DataMap  
)
overridevirtual
void protocols::task_operations::PreventResiduesFromRepackingOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
std::string protocols::task_operations::PreventResiduesFromRepackingOperation::reference_pdb_id ( ) const
inline

References reference_pdb_id_.

void protocols::task_operations::PreventResiduesFromRepackingOperation::reference_pdb_id ( std::string const &  s)
inline

References reference_pdb_id_.

void protocols::task_operations::PreventResiduesFromRepackingOperation::set_residues ( utility::vector1< core::Size residues_vec)

References residues_.

Member Data Documentation

std::string protocols::task_operations::PreventResiduesFromRepackingOperation::reference_pdb_id_
private

Referenced by parse_tag(), and reference_pdb_id().

utility::vector1<core::Size> protocols::task_operations::PreventResiduesFromRepackingOperation::residues_
private
std::string protocols::task_operations::PreventResiduesFromRepackingOperation::unparsed_residues_
private

Referenced by parse_tag().


The documentation for this class was generated from the following files: