Rosetta
Classes | Typedefs | Enumerations | Functions
protocols::task_operations Namespace Reference

Classes

class  AlignedThreadOperation
 
class  AlignedThreadOperationCreator
 
class  ConservativeDesignOperation
 A TaskOperation that sets the allowed amino acids of designable residues to the native amino acid's conservative mutations. More...
 
class  ConservativeDesignOperationCreator
 
class  CrystalContactsOperation
 
class  CrystalContactsOperationCreator
 
class  DatabaseThread
 
class  DatabaseThreadCreator
 
class  DesignAroundOperation
 
class  DesignAroundOperationCreator
 
class  DsspDesignOperation
 TaskOperation that can be used to restrict AAs allowed at each position based on DSSP-assigned secondary structure. More...
 
class  DsspDesignOperationCreator
 
class  ImportUnboundRotamersOperation
 
class  ImportUnboundRotamersOperationCreator
 
class  InteractingRotamerExplosion
 : taskop to oversample rotamers that make good interactions with a (set of) specified target residue(s) similar to Rosetta 2.x rotamer explosion More...
 
class  InteractingRotamerExplosionCreator
 
class  JointSequenceOperation
 
class  JointSequenceOperationCreator
 
class  LimitAromaChi2_RotamerSetOperation
 
class  LimitAromaChi2Operation
 
class  LimitAromaChi2OperationCreator
 
class  LinkResidues
 
class  LinkResiduesCreator
 
class  ModifyAnnealer
 
class  ModifyAnnealerCreator
 
class  MutationSetDesignOperation
 Sample a set of mutations each time packer is generated. A MutationSet is a simple map of resnum:aa. Each apply will sample a set either at random, or with a set of weights. More...
 
class  pHVariantTaskOperation
 During repacking, allow interchangeability of protonated and deprotonated variants. More...
 
class  pHVariantTaskOperationCreator
 
class  PreventChainFromRepackingOperation
 
class  PreventChainFromRepackingOperationCreator
 
class  PreventResiduesFromRepackingOperation
 
class  PreventResiduesFromRepackingOperationCreator
 
class  ProteinCore
 
class  ProteinCoreFilterCreator
 
class  ProteinInterfaceDesignOperation
 
class  ProteinInterfaceDesignOperationCreator
 
class  PruneBuriedUnsats_RotamerSetsOperation
 
class  PruneBuriedUnsatsOperation
 
class  PruneBuriedUnsatsOperationCreator
 
class  ReadResfileFromDB
 
class  ReadResfileFromDBCreator
 
class  ResfileCommandOperation
 Applies the equivalent of a resfile line (without the resnums) to residues specified in a residue selector. More...
 
class  ResfileCommandOperationCreator
 
class  ResidueProbDesignOperation
 A TaskOperation that allows amino acids at designable positions through a set of aa probabilities (aa profile). More...
 
class  ResidueProbDesignOperationCreator
 
class  RestrictByCalculatorsOperation
 
class  RestrictByCalculatorsOperationCreator
 
class  RestrictChainToRepackingOperation
 
class  RestrictChainToRepackingOperationCreator
 
class  RestrictIdentitiesAtAlignedPositionsOperation
 
class  RestrictIdentitiesAtAlignedPositionsOperationCreator
 
class  RestrictIdentitiesOperation
 
class  RestrictIdentitiesOperationCreator
 
class  RestrictInterGroupVectorOperation
 
class  RestrictInterGroupVectorOperationCreator
 
class  RestrictNativeResiduesOperation
 
class  RestrictNativeResiduesOperationCreator
 
class  RestrictNonSurfaceToRepackingOperation
 
class  RestrictNonSurfaceToRepackingOperationCreator
 
class  RestrictOperationsBase
 
class  RestrictResiduesToRepackingOperation
 
class  RestrictResiduesToRepackingOperationCreator
 
class  RestrictToAlignedSegmentsOperation
 
class  RestrictToAlignedSegmentsOperationCreator
 
class  RestrictToCDRH3Loop
 
class  RestrictToCDRH3LoopCreator
 
class  RestrictToInterfaceOperation
 
class  RestrictToInterfaceOperationCreator
 
class  RestrictToInterfaceVectorOperation
 
class  RestrictToInterfaceVectorOperationCreator
 
class  RestrictToMoveMapChiOperation
 A TaskOperation that accepts a movemap and restricts chi that are false to either packing or design. Does not turn anything on, just like the rest of the RestrictTo operations. More...
 
class  RestrictToNeighborhoodOperation
 
class  RestrictToNeighborhoodOperationCreator
 
class  RestrictToTerminiOperation
 
class  RestrictToTerminiOperationCreator
 
class  RetrieveStoredTaskOperation
 
class  RetrieveStoredTaskOperationCreator
 
class  SelectByDeltaScoreOperation
 
class  SelectByDeltaScoreOperationCreator
 
class  SelectByDensityFitOperation
 
class  SelectByDensityFitOperationCreator
 
class  SelectBySASAOperation
 
class  SelectBySASAOperationCreator
 
class  SelectResiduesWithinChainOperation
 
class  SelectResiduesWithinChainOperationCreator
 
class  SeqprofConsensusOperation
 
class  RestrictConservedLowDdgOperation
 a Task operation that will check whether the amino acid at a position is conserved in the sequence profile and has an unfavorable ddG when mutated to ala. all positions that match this criterion will get set to repacking. More...
 
class  SeqprofConsensusOperationCreator
 
class  RestrictConservedLowDdgOperationCreator
 
class  SequenceMotifTaskOperation
 A TaskOp that takes a regex-like pattern and turns it into a set of design residues. The string should identify what to do for each position. More...
 
class  SequenceMotifTaskOperationCreator
 
class  SetIGTypeOperation
 
class  SetIGTypeOperationCreator
 
class  STMStoredTask
 
class  StoreCombinedStoredTasksMover
 mover that can be used to save or restore a task at an arbitrary point during a rosetta scripts protocol. other task operations, movers, or filters can be set up to access tasks saved by this mover during their apply calls. More...
 
class  StoreCombinedStoredTasksMoverCreator
 
class  StoreCompoundTaskMover
 
class  StoreCompoundTaskMoverCreator
 
class  StoreTaskMover
 mover that can be used to save or restore a task at an arbitrary point during a rosetta scripts protocol. other task operations, movers, or filters can be set up to access tasks saved by this mover during their apply calls. More...
 
class  StoreTaskMoverCreator
 
class  ThreadSequenceOperation
 
class  ThreadSequenceOperationCreator
 

Typedefs

typedef utility::pointer::shared_ptr< AlignedThreadOperationAlignedThreadOperationOP
 
typedef utility::pointer::shared_ptr< AlignedThreadOperation const > AlignedThreadOperationCOP
 
typedef utility::pointer::shared_ptr< ConservativeDesignOperationConservativeDesignOperationOP
 
typedef utility::pointer::shared_ptr< ConservativeDesignOperation const > ConservativeDesignOperationCOP
 
typedef utility::pointer::shared_ptr< CrystalContactsOperationCrystalContactsOperationOP
 
typedef utility::pointer::shared_ptr< CrystalContactsOperation const > CrystalContactsOperationCOP
 
typedef utility::pointer::shared_ptr< DatabaseThreadDatabaseThreadOP
 
typedef utility::pointer::shared_ptr< DatabaseThread const > DatabaseThreadCOP
 
typedef utility::pointer::shared_ptr< DesignAroundOperationDesignAroundOperationOP
 
typedef utility::pointer::shared_ptr< DesignAroundOperation const > DesignAroundOperationCOP
 
typedef utility::pointer::shared_ptr< DsspDesignOperationDsspDesignOperationOP
 
typedef utility::pointer::shared_ptr< ImportUnboundRotamersOperationImportUnboundRotamersOperationOP
 
typedef utility::pointer::shared_ptr< ImportUnboundRotamersOperation const > ImportUnboundRotamersOperationCOP
 
typedef utility::pointer::shared_ptr< InteractingRotamerOperation > InteractingRotamerOperationOP
 
typedef utility::pointer::shared_ptr< InteractingRotamerOperation const > InteractingRotamerOperationCOP
 
typedef utility::pointer::shared_ptr< JointSequenceOperationJointSequenceOperationOP
 
typedef utility::pointer::shared_ptr< LimitAromaChi2_RotamerSetOperationLimitAromaChi2_RotamerSetOperationOP
 
typedef utility::pointer::shared_ptr< LimitAromaChi2_RotamerSetOperation const > LimitAromaChi2_RotamerSetOperationCOP
 
typedef utility::pointer::shared_ptr< LimitAromaChi2OperationLimitAromaChi2OperationOP
 
typedef utility::pointer::shared_ptr< LimitAromaChi2Operation const > LimitAromaChi2OperationCOP
 
typedef utility::pointer::shared_ptr< LinkResiduesLinkResiduesOP
 
typedef utility::pointer::shared_ptr< LinkResidues const > LinkResiduesCOP
 
typedef utility::pointer::shared_ptr< ModifyAnnealerModifyAnnealerOP
 
typedef utility::pointer::shared_ptr< ModifyAnnealer const > ModifyAnnealerCOP
 
typedef utility::pointer::shared_ptr< MutationSetDesignOperationMutationSetDesignOperationOP
 
typedef utility::pointer::shared_ptr< MutationSetDesignOperation const > MutationSetDesignOperationCOP
 
typedef std::map< core::Size, core::chemical::AAMutationSet
 
typedef utility::pointer::shared_ptr< pHVariantTaskOperationpHVariantTaskOperationOP
 
typedef utility::pointer::shared_ptr< pHVariantTaskOperation const > pHVariantTaskOperationCOP
 
typedef utility::pointer::shared_ptr< PreventChainFromRepackingOperationPreventChainFromRepackingOperationOP
 
typedef utility::pointer::shared_ptr< PreventChainFromRepackingOperation const > PreventChainFromRepackingOperationCOP
 
typedef utility::pointer::shared_ptr< PreventResiduesFromRepackingOperationPreventResiduesFromRepackingOperationOP
 
typedef utility::pointer::shared_ptr< PreventResiduesFromRepackingOperation const > PreventResiduesFromRepackingOperationCOP
 
typedef utility::pointer::shared_ptr< ProteinInterfaceDesignOperationProteinInterfaceDesignOperationOP
 
typedef utility::pointer::shared_ptr< ProteinInterfaceDesignOperation const > ProteinInterfaceDesignOperationCOP
 
typedef utility::pointer::shared_ptr< PruneBuriedUnsats_RotamerSetsOperationPruneBuriedUnsats_RotamerSetsOperationOP
 
typedef utility::pointer::shared_ptr< PruneBuriedUnsats_RotamerSetsOperation const > PruneBuriedUnsats_RotamerSetsOperationCOP
 
typedef utility::pointer::shared_ptr< PruneBuriedUnsatsOperationPruneBuriedUnsatsOperationOP
 
typedef utility::pointer::shared_ptr< PruneBuriedUnsatsOperation const > PruneBuriedUnsatsOperationCOP
 
typedef utility::pointer::shared_ptr< ReadResfileFromDBReadResfileFromDBOP
 
typedef utility::pointer::shared_ptr< ResfileCommandOperationResfileCommandOperationOP
 
typedef utility::pointer::shared_ptr< ResfileCommandOperation const > ResfileCommandOperationCOP
 
typedef std::map< core::chemical::AA, RealAAProbabilities
 
typedef std::map< core::Size, AAProbabilitiesPerResidueAAProbSet
 
typedef utility::pointer::shared_ptr< ResidueProbDesignOperationResidueProbDesignOperationOP
 
typedef utility::pointer::shared_ptr< ResidueProbDesignOperation const > ResidueProbDesignOperationCOP
 
typedef utility::pointer::shared_ptr< RestrictByCalculatorsOperationRestrictByCalculatorsOperationOP
 
typedef utility::pointer::shared_ptr< RestrictByCalculatorsOperation const > RestrictByCalculatorsOperationCOP
 
typedef utility::pointer::shared_ptr< RestrictChainToRepackingOperationRestrictChainToRepackingOperationOP
 
typedef utility::pointer::shared_ptr< RestrictChainToRepackingOperation const > RestrictChainToRepackingOperationCOP
 
typedef utility::pointer::shared_ptr< RestrictIdentitiesAtAlignedPositionsOperationRestrictIdentitiesAtAlignedPositionsOperationOP
 
typedef utility::pointer::shared_ptr< RestrictIdentitiesAtAlignedPositionsOperation const > RestrictIdentitiesAtAlignedPositionsOperationCOP
 
typedef utility::pointer::shared_ptr< RestrictIdentitiesOperationRestrictIdentitiesOperationOP
 
typedef utility::pointer::shared_ptr< RestrictIdentitiesOperation const > RestrictIdentitiesOperationCOP
 
typedef utility::pointer::shared_ptr< RestrictInterGroupVectorOperationRestrictInterGroupVectorOperationOP
 
typedef utility::pointer::shared_ptr< RestrictInterGroupVectorOperation const > RestrictInterGroupVectorOperationCOP
 
typedef utility::pointer::shared_ptr< RestrictNativeResiduesOperationRestrictNativeResiduesOperationOP
 
typedef utility::pointer::shared_ptr< RestrictNonSurfaceToRepackingOperationRestrictNonSurfaceToRepackingOperationOP
 
typedef utility::pointer::shared_ptr< RestrictOperationsBaseRestrictOperationsBaseOP
 
typedef utility::pointer::shared_ptr< RestrictOperationsBase const > RestrictOperationsBaseCOP
 
typedef utility::pointer::shared_ptr< RestrictResiduesToRepackingOperationRestrictResiduesToRepackingOperationOP
 
typedef utility::pointer::shared_ptr< RestrictResiduesToRepackingOperation const > RestrictResiduesToRepackingOperationCOP
 
typedef utility::pointer::shared_ptr< RestrictToAlignedSegmentsOperationRestrictToAlignedSegmentsOperationOP
 
typedef utility::pointer::shared_ptr< RestrictToAlignedSegmentsOperation const > RestrictToAlignedSegmentsOperationCOP
 
typedef utility::pointer::shared_ptr< RestrictToCDRH3LoopRestrictToCDRH3LoopOP
 
typedef utility::pointer::shared_ptr< RestrictToInterfaceOperationRestrictToInterfaceOperationOP
 
typedef utility::pointer::shared_ptr< RestrictToInterfaceOperation const > RestrictToInterfaceOperationCOP
 
typedef utility::pointer::shared_ptr< RestrictToInterfaceVectorOperationRestrictToInterfaceVectorOperationOP
 
typedef utility::pointer::shared_ptr< RestrictToInterfaceVectorOperation const > RestrictToInterfaceVectorOperationCOP
 
typedef utility::pointer::shared_ptr< RestrictToMoveMapChiOperationRestrictToMoveMapChiOperationOP
 
typedef utility::pointer::shared_ptr< RestrictToNeighborhoodOperationRestrictToNeighborhoodOperationOP
 
typedef utility::pointer::shared_ptr< RestrictToNeighborhoodOperation const > RestrictToNeighborhoodOperationCOP
 
typedef utility::pointer::shared_ptr< RestrictToTerminiOperationRestrictToTerminiOperationOP
 
typedef utility::pointer::shared_ptr< RestrictToTerminiOperation const > RestrictToTerminiOperationCOP
 
typedef utility::pointer::shared_ptr< RetrieveStoredTaskOperationRetrieveStoredTaskOperationOP
 
typedef utility::pointer::shared_ptr< RetrieveStoredTaskOperation const > RetrieveStoredTaskOperationCOP
 
typedef utility::pointer::shared_ptr< SelectByDeltaScoreOperationSelectByDeltaScoreOperationOP
 
typedef utility::pointer::shared_ptr< SelectByDensityFitOperationSelectByDensityFitOperationOP
 
typedef utility::pointer::shared_ptr< SelectByDensityFitOperation const > SelectByDensityFitOperationCOP
 
typedef utility::pointer::shared_ptr< SelectBySASAOperationSelectBySASAOperationOP
 
typedef utility::pointer::shared_ptr< SelectBySASAOperation const > SelectBySASAOperationCOP
 
typedef utility::pointer::shared_ptr< SelectResiduesWithinChainOperationSelectResiduesWithinChainOperationOP
 
typedef utility::pointer::shared_ptr< SelectResiduesWithinChainOperation const > SelectResiduesWithinChainOperationCOP
 
typedef utility::pointer::shared_ptr< SeqprofConsensusOperationSeqprofConsensusOperationOP
 
typedef utility::pointer::shared_ptr< RestrictConservedLowDdgOperationRestrictConservedLowDdgOperationOP
 
typedef utility::pointer::shared_ptr< SequenceMotifTaskOperationSequenceMotifTaskOperationOP
 
typedef utility::pointer::shared_ptr< SequenceMotifTaskOperation const > SequenceMotifTaskOperationCOP
 
typedef utility::pointer::shared_ptr< SetIGTypeOperationSetIGTypeOperationOP
 
typedef utility::pointer::shared_ptr< SetIGTypeOperation const > SetIGTypeOperationCOP
 
typedef utility::pointer::shared_ptr< STMStoredTaskSTMStoredTaskOP
 
typedef utility::pointer::shared_ptr< STMStoredTask const > STMStoredTaskCOP
 
typedef utility::pointer::shared_ptr< StoreCombinedStoredTasksMoverStoreCombinedStoredTasksMoverOP
 
typedef utility::pointer::shared_ptr< StoreCombinedStoredTasksMover const > StoreCombinedStoredTasksMoverCOP
 
typedef utility::pointer::shared_ptr< StoreCompoundTaskMoverStoreCompoundTaskMoverOP
 
typedef utility::pointer::shared_ptr< StoreCompoundTaskMover const > StoreCompoundTaskMoverCOP
 
typedef utility::pointer::shared_ptr< StoreTaskMoverStoreTaskMoverOP
 
typedef utility::pointer::shared_ptr< StoreTaskMover const > StoreTaskMoverCOP
 
typedef utility::pointer::shared_ptr< ThreadSequenceOperationThreadSequenceOperationOP
 
typedef utility::pointer::shared_ptr< ThreadSequenceOperation const > ThreadSequenceOperationCOP
 

Enumerations

enum  boolean_operations {
  AND =1 , OR , XOR , NOR ,
  NAND , ORNOT , ANDNOT , NOT
}
 

Functions

std::string dsspdo_subelement_ct_name (std::string const &name)
 
std::string dsspdo_group_name ()
 
std::string linkres_subelement_ctname (std::string const &name)
 
std::string linkres_subelement_group ()
 
static basic::Tracer TR ("protocols.toolbox.task_operations.ReadResfileFromDB")
 
std::string rtas_subelement_ct_naming_function (std::string const &name)
 
static basic::Tracer TR ("protocols.task_operations.STMStoredTask")
 

Typedef Documentation

◆ AAProbabilities

◆ AlignedThreadOperationCOP

◆ AlignedThreadOperationOP

◆ ConservativeDesignOperationCOP

◆ ConservativeDesignOperationOP

◆ CrystalContactsOperationCOP

◆ CrystalContactsOperationOP

◆ DatabaseThreadCOP

typedef utility::pointer::shared_ptr< DatabaseThread const > protocols::task_operations::DatabaseThreadCOP

◆ DatabaseThreadOP

typedef utility::pointer::shared_ptr< DatabaseThread > protocols::task_operations::DatabaseThreadOP

◆ DesignAroundOperationCOP

typedef utility::pointer::shared_ptr< DesignAroundOperation const > protocols::task_operations::DesignAroundOperationCOP

◆ DesignAroundOperationOP

◆ DsspDesignOperationOP

◆ ImportUnboundRotamersOperationCOP

◆ ImportUnboundRotamersOperationOP

◆ InteractingRotamerOperationCOP

typedef utility::pointer::shared_ptr< InteractingRotamerOperation const > protocols::task_operations::InteractingRotamerOperationCOP

◆ InteractingRotamerOperationOP

typedef utility::pointer::shared_ptr< InteractingRotamerOperation > protocols::task_operations::InteractingRotamerOperationOP

◆ JointSequenceOperationOP

◆ LimitAromaChi2_RotamerSetOperationCOP

◆ LimitAromaChi2_RotamerSetOperationOP

◆ LimitAromaChi2OperationCOP

◆ LimitAromaChi2OperationOP

◆ LinkResiduesCOP

typedef utility::pointer::shared_ptr< LinkResidues const > protocols::task_operations::LinkResiduesCOP

◆ LinkResiduesOP

typedef utility::pointer::shared_ptr< LinkResidues > protocols::task_operations::LinkResiduesOP

◆ ModifyAnnealerCOP

typedef utility::pointer::shared_ptr< ModifyAnnealer const > protocols::task_operations::ModifyAnnealerCOP

◆ ModifyAnnealerOP

typedef utility::pointer::shared_ptr< ModifyAnnealer > protocols::task_operations::ModifyAnnealerOP

◆ MutationSet

◆ MutationSetDesignOperationCOP

◆ MutationSetDesignOperationOP

◆ PerResidueAAProbSet

◆ pHVariantTaskOperationCOP

◆ pHVariantTaskOperationOP

◆ PreventChainFromRepackingOperationCOP

◆ PreventChainFromRepackingOperationOP

◆ PreventResiduesFromRepackingOperationCOP

◆ PreventResiduesFromRepackingOperationOP

◆ ProteinInterfaceDesignOperationCOP

◆ ProteinInterfaceDesignOperationOP

◆ PruneBuriedUnsats_RotamerSetsOperationCOP

◆ PruneBuriedUnsats_RotamerSetsOperationOP

◆ PruneBuriedUnsatsOperationCOP

◆ PruneBuriedUnsatsOperationOP

◆ ReadResfileFromDBOP

typedef utility::pointer::shared_ptr< ReadResfileFromDB > protocols::task_operations::ReadResfileFromDBOP

◆ ResfileCommandOperationCOP

◆ ResfileCommandOperationOP

◆ ResidueProbDesignOperationCOP

◆ ResidueProbDesignOperationOP

◆ RestrictByCalculatorsOperationCOP

◆ RestrictByCalculatorsOperationOP

◆ RestrictChainToRepackingOperationCOP

◆ RestrictChainToRepackingOperationOP

◆ RestrictConservedLowDdgOperationOP

◆ RestrictIdentitiesAtAlignedPositionsOperationCOP

◆ RestrictIdentitiesAtAlignedPositionsOperationOP

◆ RestrictIdentitiesOperationCOP

◆ RestrictIdentitiesOperationOP

◆ RestrictInterGroupVectorOperationCOP

◆ RestrictInterGroupVectorOperationOP

◆ RestrictNativeResiduesOperationOP

◆ RestrictNonSurfaceToRepackingOperationOP

◆ RestrictOperationsBaseCOP

◆ RestrictOperationsBaseOP

◆ RestrictResiduesToRepackingOperationCOP

◆ RestrictResiduesToRepackingOperationOP

◆ RestrictToAlignedSegmentsOperationCOP

◆ RestrictToAlignedSegmentsOperationOP

◆ RestrictToCDRH3LoopOP

◆ RestrictToInterfaceOperationCOP

◆ RestrictToInterfaceOperationOP

◆ RestrictToInterfaceVectorOperationCOP

◆ RestrictToInterfaceVectorOperationOP

◆ RestrictToMoveMapChiOperationOP

◆ RestrictToNeighborhoodOperationCOP

◆ RestrictToNeighborhoodOperationOP

◆ RestrictToTerminiOperationCOP

◆ RestrictToTerminiOperationOP

◆ RetrieveStoredTaskOperationCOP

◆ RetrieveStoredTaskOperationOP

◆ SelectByDeltaScoreOperationOP

◆ SelectByDensityFitOperationCOP

◆ SelectByDensityFitOperationOP

◆ SelectBySASAOperationCOP

typedef utility::pointer::shared_ptr< SelectBySASAOperation const > protocols::task_operations::SelectBySASAOperationCOP

◆ SelectBySASAOperationOP

◆ SelectResiduesWithinChainOperationCOP

◆ SelectResiduesWithinChainOperationOP

◆ SeqprofConsensusOperationOP

◆ SequenceMotifTaskOperationCOP

◆ SequenceMotifTaskOperationOP

◆ SetIGTypeOperationCOP

typedef utility::pointer::shared_ptr< SetIGTypeOperation const > protocols::task_operations::SetIGTypeOperationCOP

◆ SetIGTypeOperationOP

◆ STMStoredTaskCOP

typedef utility::pointer::shared_ptr< STMStoredTask const > protocols::task_operations::STMStoredTaskCOP

◆ STMStoredTaskOP

typedef utility::pointer::shared_ptr< STMStoredTask > protocols::task_operations::STMStoredTaskOP

◆ StoreCombinedStoredTasksMoverCOP

◆ StoreCombinedStoredTasksMoverOP

◆ StoreCompoundTaskMoverCOP

◆ StoreCompoundTaskMoverOP

◆ StoreTaskMoverCOP

typedef utility::pointer::shared_ptr< StoreTaskMover const > protocols::task_operations::StoreTaskMoverCOP

◆ StoreTaskMoverOP

typedef utility::pointer::shared_ptr< StoreTaskMover > protocols::task_operations::StoreTaskMoverOP

◆ ThreadSequenceOperationCOP

◆ ThreadSequenceOperationOP

Enumeration Type Documentation

◆ boolean_operations

Enumerator
AND 
OR 
XOR 
NOR 
NAND 
ORNOT 
ANDNOT 
NOT 

Function Documentation

◆ dsspdo_group_name()

std::string protocols::task_operations::dsspdo_group_name ( )

◆ dsspdo_subelement_ct_name()

std::string protocols::task_operations::dsspdo_subelement_ct_name ( std::string const &  name)

◆ linkres_subelement_ctname()

std::string protocols::task_operations::linkres_subelement_ctname ( std::string const &  name)

◆ linkres_subelement_group()

std::string protocols::task_operations::linkres_subelement_group ( )

◆ rtas_subelement_ct_naming_function()

std::string protocols::task_operations::rtas_subelement_ct_naming_function ( std::string const &  name)

◆ TR() [1/2]

static basic::Tracer protocols::task_operations::TR ( "protocols.task_operations.STMStoredTask"  )
static

◆ TR() [2/2]

static basic::Tracer protocols::task_operations::TR ( "protocols.toolbox.task_operations.ReadResfileFromDB"  )
static

Referenced by protocols::task_operations::JointSequenceOperation::add_pose(), protocols::task_operations::PruneBuriedUnsats_RotamerSetsOperation::alter_rotamer_sets(), protocols::task_operations::StoreCombinedStoredTasksMover::apply(), protocols::task_operations::AlignedThreadOperation::apply(), protocols::task_operations::CrystalContactsOperation::apply(), protocols::task_operations::DatabaseThread::apply(), protocols::task_operations::LinkResidues::apply(), protocols::task_operations::ProteinInterfaceDesignOperation::apply(), protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::apply(), protocols::task_operations::RestrictIdentitiesOperation::apply(), protocols::task_operations::RestrictResiduesToRepackingOperation::apply(), protocols::task_operations::RestrictToAlignedSegmentsOperation::apply(), protocols::task_operations::RestrictToInterfaceVectorOperation::apply(), protocols::task_operations::SelectByDeltaScoreOperation::apply(), protocols::task_operations::SelectByDensityFitOperation::apply(), protocols::task_operations::SelectBySASAOperation::apply(), protocols::task_operations::SelectResiduesWithinChainOperation::apply(), protocols::task_operations::ReadResfileFromDB::apply(), protocols::task_operations::ResidueProbDesignOperation::apply(), protocols::task_operations::SequenceMotifTaskOperation::apply(), protocols::task_operations::DsspDesignOperation::apply(), protocols::task_operations::JointSequenceOperation::apply(), protocols::task_operations::RestrictNativeResiduesOperation::apply(), protocols::task_operations::StoreCompoundTaskMover::CompoundDesignableTask(), protocols::task_operations::StoreCompoundTaskMover::CompoundPackableTask(), protocols::task_operations::DatabaseThread::find_length(), protocols::task_operations::CrystalContactsOperation::is_crystal_contact(), protocols::task_operations::ConservativeDesignOperation::load_data_from_db(), protocols::task_operations::RestrictToInterfaceOperation::make_calculator(), protocols::task_operations::RestrictToNeighborhoodOperation::make_calculator(), protocols::task_operations::StoreCompoundTaskMover::parse_my_tag(), protocols::task_operations::DsspDesignOperation::parse_tag(), protocols::task_operations::JointSequenceOperation::parse_tag(), protocols::task_operations::LinkResidues::parse_tag(), protocols::task_operations::RestrictNativeResiduesOperation::parse_tag(), protocols::task_operations::RestrictToInterfaceVectorOperation::parse_tag(), protocols::task_operations::ProteinCore::parse_tag(), protocols::task_operations::AlignedThreadOperation::parse_tag(), protocols::task_operations::DesignAroundOperation::parse_tag(), protocols::task_operations::PreventResiduesFromRepackingOperation::parse_tag(), protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::parse_tag(), protocols::task_operations::RestrictIdentitiesOperation::parse_tag(), protocols::task_operations::RestrictResiduesToRepackingOperation::parse_tag(), protocols::task_operations::SelectResiduesWithinChainOperation::parse_tag(), protocols::task_operations::ThreadSequenceOperation::parse_tag(), protocols::task_operations::DatabaseThread::pick_sequence_from_database(), protocols::task_operations::ResidueProbDesignOperation::set_aa_probabilities_from_file(), protocols::task_operations::DsspDesignOperation::set_default_sse_residues(), and protocols::task_operations::ConservativeDesignOperation::skip_resid().