protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver Class Reference

#include <EnzdesCacheableObserver.hh>

Inheritance diagram for protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver:

Public Member Functions
	EnzdesCacheableObserver ()
	EnzdesCacheableObserver (EnzdesCacheableObserver const &other)
	~EnzdesCacheableObserver () override
core::pose::datacache::CacheableObserverOP	clone () override
	clone this object More...
core::pose::datacache::CacheableObserverOP	create () override
	create a new instance of this object More...
bool	is_attached () const override
	is this observer attached to a Pose/Conformation? More...
void	set_cst_cache (toolbox::match_enzdes_util::EnzdesCstCacheOP cst_cache)
toolbox::match_enzdes_util::EnzdesCstCacheOP	cst_cache ()
toolbox::match_enzdes_util::EnzdesCstCacheCOP	cst_cache () const
std::map< core::Size, utility::vector1< core::conformation::ResidueCOP > > const &	lig_rigid_body_confs () const
void	set_rigid_body_confs_for_lig (core::Size seqpos, utility::vector1< core::conformation::ResidueCOP > const &rg_confs)
void	erase_rigid_body_confs_for_lig (core::Size seqpos)
void	set_seq_recovery_cache (EnzdesSeqRecoveryCacheOP seq_recovery_cache)
EnzdesSeqRecoveryCacheOP	get_seq_recovery_cache ()
EnzdesSeqRecoveryCacheCOP	get_seq_recovery_cache () const
void	set_enzdes_loops_file (EnzdesLoopsFileCOP loopfile_in)
EnzdesLoopsFileCOP	enzdes_loops_file () const
void	setup_favor_native_constraints (core::pose::Pose &pose, core::pack::task::PackerTaskCOP task, core::pose::Pose const &native_pose)
void	remove_favor_native_constraints (core::pose::Pose &pose)
Public Member Functions inherited from core::pose::datacache::CacheableObserver
	CacheableObserver ()
	default constructor More...
	CacheableObserver (CacheableObserver const &rval)
	copy constructor More...
	~CacheableObserver () override
	default destructor More...
CacheableObserver &	operator= (CacheableObserver const &rval)
	copy assignment More...
void	attach_to (Pose &pose)
	attach to Pose/Conformation Derived classes do not overload this method – see attach_impl() instead. More...
void	detach_from ()
	detach from Pose/Conformation More...

Protected Member Functions
void	attach_impl (core::pose::Pose &pose) override
	attach to Pose/Conformation More...
void	detach_impl () override
	detach from Pose/Conformation More...
void	on_length_change (core::conformation::signals::LengthEvent const &event)

Private Attributes
toolbox::match_enzdes_util::EnzdesCstCacheOP	cst_cache_
EnzdesSeqRecoveryCacheOP	seq_recovery_cache_
core::scoring::constraints::ConstraintCOPs	favor_native_constraints_
EnzdesLoopsFileCOP	enz_loops_file_
std::map< core::Size, utility::vector1< core::conformation::ResidueCOP > >	lig_rigid_body_confs_
utility::signals::Link	length_event_link_

Constructor & Destructor Documentation

EnzdesCacheableObserver() [1/2]

protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::EnzdesCacheableObserver

(

)

References favor_native_constraints_, and lig_rigid_body_confs_.

EnzdesCacheableObserver() [2/2]

protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::EnzdesCacheableObserver

(

EnzdesCacheableObserver const &

other

)

References cst_cache_, and seq_recovery_cache_.

~EnzdesCacheableObserver()

protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::~EnzdesCacheableObserver ( )

overridedefault

Member Function Documentation

attach_impl()

void protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::attach_impl ( core::pose::Pose &  pose )

overrideprotectedvirtual

attach to Pose/Conformation

Implements core::pose::datacache::CacheableObserver.

References core::conformation::Conformation::attach_length_obs(), core::pose::Pose::conformation(), length_event_link_, and on_length_change().

clone()

core::pose::datacache::CacheableObserverOP protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::clone ( )

overridevirtual

clone this object

Warning

Subject (represented by Link/pointer) is not copied!

Implements core::pose::datacache::CacheableObserver.

Referenced by set_rigid_body_confs_for_lig().

create()

core::pose::datacache::CacheableObserverOP protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::create ( )

overridevirtual

create a new instance of this object

Implements core::pose::datacache::CacheableObserver.

cst_cache() [1/2]

toolbox::match_enzdes_util::EnzdesCstCacheOP protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::cst_cache

(

)

References cst_cache_.

Referenced by set_cst_cache().

cst_cache() [2/2]

toolbox::match_enzdes_util::EnzdesCstCacheCOP protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::cst_cache

(

)

const

References cst_cache_.

detach_impl()

void protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::detach_impl ( )

overrideprotectedvirtual

detach from Pose/Conformation

Implements core::pose::datacache::CacheableObserver.

References length_event_link_.

enzdes_loops_file()

EnzdesLoopsFileCOP protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::enzdes_loops_file

(

)

const

References enz_loops_file_.

erase_rigid_body_confs_for_lig()

void protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::erase_rigid_body_confs_for_lig

(

core::Size

seqpos

)

References lig_rigid_body_confs_.

Referenced by set_rigid_body_confs_for_lig().

get_seq_recovery_cache() [1/2]

EnzdesSeqRecoveryCacheOP protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::get_seq_recovery_cache

(

)

References seq_recovery_cache_.

get_seq_recovery_cache() [2/2]

EnzdesSeqRecoveryCacheCOP protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::get_seq_recovery_cache

(

)

const

References seq_recovery_cache_.

is_attached()

bool protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::is_attached ( ) const

overridevirtual

is this observer attached to a Pose/Conformation?

Implements core::pose::datacache::CacheableObserver.

References length_event_link_.

lig_rigid_body_confs()

std::map< core::Size, utility::vector1< core::conformation::ResidueCOP > > const & protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::lig_rigid_body_confs

(

)

const

References lig_rigid_body_confs_.

on_length_change()

void protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::on_length_change ( core::conformation::signals::LengthEvent const &  event )

protected

References cst_cache_, favor_native_constraints_, core::conformation::signals::LengthEvent::INVALIDATE, seq_recovery_cache_, and core::conformation::signals::LengthEvent::tag.

Referenced by attach_impl().

remove_favor_native_constraints()

void protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::remove_favor_native_constraints

(

core::pose::Pose &

pose

)

References favor_native_constraints_, core::pose::Pose::remove_constraints(), and protocols::toolbox::match_enzdes_util::tr().

Referenced by setup_favor_native_constraints().

set_cst_cache()

void protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::set_cst_cache

(

toolbox::match_enzdes_util::EnzdesCstCacheOP

cst_cache

)

References cst_cache(), and cst_cache_.

set_enzdes_loops_file()

void protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::set_enzdes_loops_file

(

EnzdesLoopsFileCOP

loopfile_in

)

References enz_loops_file_.

set_rigid_body_confs_for_lig()

void protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::set_rigid_body_confs_for_lig	(	core::Size	seqpos,
		utility::vector1< core::conformation::ResidueCOP > const &	rg_confs
	)

References clone(), erase_rigid_body_confs_for_lig(), lig_rigid_body_confs_, and core::scoring::pair.

set_seq_recovery_cache()

void protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::set_seq_recovery_cache

(

EnzdesSeqRecoveryCacheOP

seq_recovery_cache

)

References seq_recovery_cache_.

setup_favor_native_constraints()

void protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::setup_favor_native_constraints	(	core::pose::Pose &	pose,
		core::pack::task::PackerTaskCOP	task,
		core::pose::Pose const &	native_pose
	)

References core::pose::Pose::add_constraint(), core::pose::Pose::add_constraints(), core::sequence::end, favor_native_constraints_, protocols::abinitio::filename(), remove_favor_native_constraints(), core::pose::Pose::size(), and protocols::toolbox::match_enzdes_util::tr().

Member Data Documentation

cst_cache_

toolbox::match_enzdes_util::EnzdesCstCacheOP protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::cst_cache_

private

Referenced by cst_cache(), EnzdesCacheableObserver(), on_length_change(), and set_cst_cache().

enz_loops_file_

EnzdesLoopsFileCOP protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::enz_loops_file_

private

Referenced by enzdes_loops_file(), and set_enzdes_loops_file().

favor_native_constraints_

core::scoring::constraints::ConstraintCOPs protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::favor_native_constraints_

private

Referenced by EnzdesCacheableObserver(), on_length_change(), remove_favor_native_constraints(), and setup_favor_native_constraints().

length_event_link_

utility::signals::Link protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::length_event_link_

private

Referenced by attach_impl(), detach_impl(), and is_attached().

lig_rigid_body_confs_

std::map< core::Size, utility::vector1< core::conformation::ResidueCOP > > protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::lig_rigid_body_confs_

private

Referenced by EnzdesCacheableObserver(), erase_rigid_body_confs_for_lig(), lig_rigid_body_confs(), and set_rigid_body_confs_for_lig().

seq_recovery_cache_

EnzdesSeqRecoveryCacheOP protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::seq_recovery_cache_

private

Referenced by EnzdesCacheableObserver(), get_seq_recovery_cache(), on_length_change(), and set_seq_recovery_cache().

---

The documentation for this class was generated from the following files:

• src/protocols/toolbox/match_enzdes_util/EnzdesCacheableObserver.hh
• src/protocols/toolbox/match_enzdes_util/EnzdesCacheableObserver.cc