#include <SilentFilePoseInputStream.hh>

Inheritance diagram for core::import_pose::pose_stream::SilentFilePoseInputStream:

Public Member Functions
	SilentFilePoseInputStream ()

	SilentFilePoseInputStream (utility::vector1< FileName > const &fns)

	SilentFilePoseInputStream (std::string const &fn)

	SilentFilePoseInputStream (utility::vector1< FileName > const &fns, bool order_by_energy)

	SilentFilePoseInputStream (utility::vector1< FileName > const &fns, core::Real energy_cut)

	SilentFilePoseInputStream (utility::vector1< FileName > const &fns, utility::vector1< string > const &input_tags)

	SilentFilePoseInputStream (utility::vector1< FileName > const &fns, utility::vector1< string > const &input_tags, core::Real energy_cut)

void	set_silent_file_data (core::io::silent::SilentFileDataOP &sfd)

core::io::silent::SilentFileDataOP	silent_file_data ()
	Access the SilentFileData owning pointer directly. More...

void	set_record_source (bool const &setting)

	~SilentFilePoseInputStream () override

void	renumber_decoys (bool const setting)

void	tags (utility::vector1< string > const &tags)

void	filenames (utility::vector1< FileName > const &filenames)

core::Real	energy_cut () const

bool	renumber_decoys () const

utility::vector1< string >	tags () const

utility::vector1< FileName >	filenames () const

void	set_order_by_energy (bool const &setting)

bool	has_another_pose () override

void	reset () override

void	fill_pose (core::pose::Pose &pose, core::chemical::ResidueTypeSet const &residue_set, bool const metapatches=true) override

void	fill_pose (core::pose::Pose &, bool const metapatches=true) override

std::string	get_last_pose_descriptor_string () const override
	Get a string describing the last pose and where it came from. More...

core::io::silent::SilentStructOP	next_struct ()

Public Member Functions inherited from core::import_pose::pose_stream::PoseInputStream
	PoseInputStream ()

	~PoseInputStream () override

virtual utility::vector1< core::pose::PoseOP >	get_all_poses (core::chemical::ResidueTypeSet const &residue_set)

void	preprocess_pose (core::pose::Pose &pose)
	Perform common operations on a Pose dependent on command-line options before finishing fill_pose. This includes optimizing hydrogens, adding constraints, and finding disulfides. This should be called in the fill_pose method of derived classes. More...

Private Types
typedef std::string	string

typedef utility::file::FileName	FileName

Private Member Functions
void	read_all_files_ ()

Private Attributes
utility::vector1< string >	tags_

utility::vector1< FileName >	filenames_

core::io::silent::SilentFileDataOP	sfd_

core::io::silent::SilentFileData::iterator	current_position_

bool	renumber_decoys_

core::Real	energy_cut_

bool	order_by_energy_

bool	record_source_

Member Typedef Documentation

◆ FileName

typedef utility::file::FileName core::import_pose::pose_stream::SilentFilePoseInputStream::FileName

private

◆ string

typedef std::string core::import_pose::pose_stream::SilentFilePoseInputStream::string

private

Constructor & Destructor Documentation

◆ SilentFilePoseInputStream() [1/7]

core::import_pose::pose_stream::SilentFilePoseInputStream::SilentFilePoseInputStream ( )

References sfd_.

◆ SilentFilePoseInputStream() [2/7]

core::import_pose::pose_stream::SilentFilePoseInputStream::SilentFilePoseInputStream ( utility::vector1< FileName > const & fns )

References filenames(), and sfd_.

◆ SilentFilePoseInputStream() [3/7]

core::import_pose::pose_stream::SilentFilePoseInputStream::SilentFilePoseInputStream ( std::string const & fn )

References filenames(), and sfd_.

◆ SilentFilePoseInputStream() [4/7]

core::import_pose::pose_stream::SilentFilePoseInputStream::SilentFilePoseInputStream	(	utility::vector1< FileName > const &	fns,
		bool	order_by_energy
	)

References filenames(), and sfd_.

◆ SilentFilePoseInputStream() [5/7]

core::import_pose::pose_stream::SilentFilePoseInputStream::SilentFilePoseInputStream	(	utility::vector1< FileName > const &	fns,
		core::Real	energy_cut
	)

References filenames(), and sfd_.

◆ SilentFilePoseInputStream() [6/7]

core::import_pose::pose_stream::SilentFilePoseInputStream::SilentFilePoseInputStream	(	utility::vector1< FileName > const &	fns,
		utility::vector1< string > const &	input_tags
	)

References filenames(), sfd_, and tags().

◆ SilentFilePoseInputStream() [7/7]

core::import_pose::pose_stream::SilentFilePoseInputStream::SilentFilePoseInputStream	(	utility::vector1< FileName > const &	fns,
		utility::vector1< string > const &	input_tags,
		core::Real	energy_cut
	)

References filenames(), sfd_, and tags().

◆ ~SilentFilePoseInputStream()

core::import_pose::pose_stream::SilentFilePoseInputStream::~SilentFilePoseInputStream ( )

inlineoverride

Member Function Documentation

◆ energy_cut()

core::Real core::import_pose::pose_stream::SilentFilePoseInputStream::energy_cut ( ) const

References energy_cut_.

Referenced by read_all_files_().

◆ filenames() [1/2]

utility::vector1< FileName > core::import_pose::pose_stream::SilentFilePoseInputStream::filenames ( ) const

References filenames_.

Referenced by filenames(), and SilentFilePoseInputStream().

◆ filenames() [2/2]

void core::import_pose::pose_stream::SilentFilePoseInputStream::filenames ( utility::vector1< FileName > const & filenames )

References current_position_, filenames(), filenames_, read_all_files_(), and sfd_.

◆ fill_pose() [1/2]

void core::import_pose::pose_stream::SilentFilePoseInputStream::fill_pose	(	core::pose::Pose &	pose,
		bool const	metapatches = `true`
	)

overridevirtual

Implements core::import_pose::pose_stream::PoseInputStream.

References current_position_, core::pose::Pose::data(), core::pack::interaction_graph::debug, has_another_pose(), core::pose::datacache::CacheableDataType::JOBDIST_OUTPUT_TAG, core::import_pose::pose_stream::PoseInputStream::preprocess_pose(), core::pose::setPoseExtraScore(), and core::import_pose::pose_stream::tr().

◆ fill_pose() [2/2]

void core::import_pose::pose_stream::SilentFilePoseInputStream::fill_pose	(	core::pose::Pose &	pose,
		core::chemical::ResidueTypeSet const &	residue_set,
		bool const	metapatches = `true`
	)