#include <NumNeighborsSelector.hh>

Inheritance diagram for core::select::residue_selector::NumNeighborsSelector:

Public Member Functions
	NumNeighborsSelector ()

	NumNeighborsSelector (NumNeighborsSelector const &src)
	Copy constructor. More...

ResidueSelectorOP	clone () const override
	Clone operator. More...

	NumNeighborsSelector (Size threshold, core::Real distance_cutoff)

	~NumNeighborsSelector () override

ResidueSubset	apply (core::pose::Pose const &pose) const override
	Return a ResidueSubset indicating a selection of Residues from the input Pose; the ResidueSubset is an array of booleans where a value of "true" for position i indicates that residue i is a part of the selected subset – and a value of "false" would indicate that it is not. More...

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &datamap) override
	Initialize any data members of this instance from an input tag and a DataMap object. More...

std::string	get_name () const override

bool	count_water () const

Size	threshold () const

Real	distance_cutoff () const

void	count_water (bool setting)

void	threshold (Size setting)

void	distance_cutoff (Size setting)

Public Member Functions inherited from core::select::residue_selector::ResidueSelector
	ResidueSelector ()
	Constructor. More...

	~ResidueSelector () override
	Destructor. More...

utility::vector1< core::Size >	selection_positions (core::pose::Pose const &pose) const
	Calls apply and returns the Rosetta numbering corresponding to the selected residues. More...

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
bool	count_water_

Size	threshold_

Real	distance_cutoff_

Constructor & Destructor Documentation

◆ NumNeighborsSelector() [1/3]

core::select::residue_selector::NumNeighborsSelector::NumNeighborsSelector ( )

◆ NumNeighborsSelector() [2/3]

core::select::residue_selector::NumNeighborsSelector::NumNeighborsSelector ( NumNeighborsSelector const & src )

Copy constructor.

◆ NumNeighborsSelector() [3/3]

core::select::residue_selector::NumNeighborsSelector::NumNeighborsSelector	(	Size	threshold,
		core::Real	distance_cutoff
	)

◆ ~NumNeighborsSelector()

core::select::residue_selector::NumNeighborsSelector::~NumNeighborsSelector ( )

overridedefault

Member Function Documentation

◆ apply()

ResidueSubset core::select::residue_selector::NumNeighborsSelector::apply ( core::pose::Pose const & pose ) const

overridevirtual

Return a ResidueSubset indicating a selection of Residues from the input Pose; the ResidueSubset is an array of booleans where a value of "true" for position i indicates that residue i is a part of the selected subset – and a value of "false" would indicate that it is not.

Implements core::select::residue_selector::ResidueSelector.

References core::chemical::ResidueTypeBase::aa(), core::chemical::aa_h2o, core::pose::Pose::conformation(), count_water_, distance_cutoff_, core::conformation::find_neighbors(), core::conformation::residue_point_graph_from_conformation(), core::pose::Pose::residue_type(), core::pose::Pose::size(), and threshold_.