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util.hh File Reference

initialization protocols for relax and utility functions More...

#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pose/Pose.fwd.hh>
#include <protocols/relax/RelaxProtocolBase.fwd.hh>
#include <utility/vector1.hh>
#include <utility/options/OptionCollection.fwd.hh>
#include <utility/options/keys/OptionKeyList.fwd.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/scoring/constraints/Constraints.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::relax
 

Functions

void protocols::relax::setup_membrane_topology (core::pose::Pose &pose, std::string spanfile)
 (pba) read in membrane topology More...
 
void protocols::relax::make_dna_rigid (core::pose::Pose &pose, core::kinematics::MoveMap &mm)
 Make DNA Rigid in movemap if found in pose. More...
 
void protocols::relax::setup_for_dna (core::scoring::ScoreFunction &scorefxn)
 Set energy method options for DNA-DNA. Any other optimization for DNA relax should go here. More...
 
void protocols::relax::relax_pose (pose::Pose &pose, core::scoring::ScoreFunctionOP scorefxn, std::string const &tag)
 
RelaxProtocolBaseOP protocols::relax::generate_relax_from_cmd (bool NULL_if_no_cmd=false)
 Create a relax mover reading from the global options collection. More...
 
RelaxProtocolBaseOP protocols::relax::generate_relax_from_cmd (utility::options::OptionCollection const &options, bool NULL_if_no_flag)
 
void protocols::relax::options_for_generate_relax_from_cmd (utility::options::OptionKeyList &opts)
 
void protocols::relax::fixH (core::pose::Pose &pose)
 Rebuild all polymer bond-dependent atoms in the pose. More...
 
void protocols::relax::cyclize_pose (core::pose::Pose &pose)
 Add terminal peptide bond and cyclic constraints to pose. More...
 
core::scoring::constraints::ConstraintCOPs protocols::relax::add_coordinate_constraint_func_atoms (core::pose::Pose const &pose, core::Size const resnum, core::conformation::Residue const &rsd_i, core::scoring::func::HarmonicFuncOP coord_cst_func, core::id::AtomID const &anchor_atom)
 

Detailed Description

initialization protocols for relax and utility functions

Author
Mike Tyka