core::import_pose::pose_stream::ExtendedPoseInputStream Class Reference

#include <ExtendedPoseInputStream.hh>

Inheritance diagram for core::import_pose::pose_stream::ExtendedPoseInputStream:

Public Member Functions
	ExtendedPoseInputStream (std::string sequence, Size ntimes)
	~ExtendedPoseInputStream () override
bool	has_another_pose () override
void	reset () override
void	fill_pose (core::pose::Pose &pose, core::chemical::ResidueTypeSet const &residue_set, bool const metapatches=true) override
void	fill_pose (core::pose::Pose &, bool const metapatches=true) override
std::string	get_last_pose_descriptor_string () const override
	Get a string describing the last pose and where it came from. More...
Public Member Functions inherited from core::import_pose::pose_stream::PoseInputStream
	PoseInputStream ()
	~PoseInputStream () override
virtual utility::vector1< core::pose::PoseOP >	get_all_poses (core::chemical::ResidueTypeSet const &residue_set)
void	preprocess_pose (core::pose::Pose &pose)
	Perform common operations on a Pose dependent on command-line options before finishing fill_pose. This includes optimizing hydrogens, adding constraints, and finding disulfides. This should be called in the fill_pose method of derived classes. More...

Private Attributes
std::string	seq_
Size	ntimes_
Size	current_n_

Constructor & Destructor Documentation

ExtendedPoseInputStream()

core::import_pose::pose_stream::ExtendedPoseInputStream::ExtendedPoseInputStream ( std::string  sequence, Size  ntimes  )

inline

~ExtendedPoseInputStream()

core::import_pose::pose_stream::ExtendedPoseInputStream::~ExtendedPoseInputStream ( )

inlineoverride

Member Function Documentation

fill_pose() [1/2]

void core::import_pose::pose_stream::ExtendedPoseInputStream::fill_pose ( core::pose::Pose &  , bool const  metapatches = true  )

overridevirtual

Implements core::import_pose::pose_stream::PoseInputStream.

fill_pose() [2/2]

void core::import_pose::pose_stream::ExtendedPoseInputStream::fill_pose ( core::pose::Pose &  pose, core::chemical::ResidueTypeSet const &  residue_set, bool const  metapatches = true  )

overridevirtual

Implements core::import_pose::pose_stream::PoseInputStream.

References current_n_, has_another_pose(), core::pose::make_pose_from_sequence(), seq_, core::pose::Pose::set_omega(), core::pose::Pose::set_phi(), core::pose::Pose::set_psi(), and core::pose::Pose::size().

get_last_pose_descriptor_string()

std::string core::import_pose::pose_stream::ExtendedPoseInputStream::get_last_pose_descriptor_string ( ) const

overridevirtual

Get a string describing the last pose and where it came from.

Input tag + filename.

Author

Vikram K. Mulligan (vmull.nosp@m.igan.nosp@m.@flat.nosp@m.iron.nosp@m.insti.nosp@m.tute.nosp@m..org).

Implements core::import_pose::pose_stream::PoseInputStream.

References current_n_.

has_another_pose()

bool core::import_pose::pose_stream::ExtendedPoseInputStream::has_another_pose ( )

overridevirtual

Implements core::import_pose::pose_stream::PoseInputStream.

References current_n_, and ntimes_.

Referenced by fill_pose().

reset()

void core::import_pose::pose_stream::ExtendedPoseInputStream::reset ( )

overridevirtual

Implements core::import_pose::pose_stream::PoseInputStream.

References current_n_.

Member Data Documentation

current_n_

Size core::import_pose::pose_stream::ExtendedPoseInputStream::current_n_

private

Referenced by fill_pose(), get_last_pose_descriptor_string(), has_another_pose(), and reset().

ntimes_

Size core::import_pose::pose_stream::ExtendedPoseInputStream::ntimes_

private

Referenced by has_another_pose().

seq_

std::string core::import_pose::pose_stream::ExtendedPoseInputStream::seq_

private

Referenced by fill_pose().

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The documentation for this class was generated from the following files:

• src/core/import_pose/pose_stream/ExtendedPoseInputStream.hh
• src/core/import_pose/pose_stream/ExtendedPoseInputStream.cc