#include <StubScoreLoopsFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::StubScoreLoopsFilter:

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Public Member Functions
	StubScoreLoopsFilter ()
	default ctor More...

	~StubScoreLoopsFilter () override

protocols::filters::FilterOP	clone () const override

protocols::filters::FilterOP	fresh_instance () const override

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...

std::string	name () const override

core::Real	get_score (core::pose::Pose const &pose) const override

Public Member Functions inherited from protocols::constraint_filters::ConstraintScoreCutoffFilter
	ConstraintScoreCutoffFilter ()
	c-tor and More...

	ConstraintScoreCutoffFilter (core::Real cutoff_in)

void	report (std::ostream &ostr, core::pose::Pose const &pose) const override

bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. In this case, the test is the result of the following comparison: sc <= cutoff Where cutoff is the cutoff set for this filter, and sc is the value of the ScoreType from the Pose Energies object. More...

void	set_cutoff (core::Real cutoff_in)

void	set_cutoff (core::pose::Pose const &pose)

core::Real	cutoff () const

void	set_constraints (core::scoring::constraints::ConstraintCOPs cst_in)

void	set_score_type (core::scoring::ScoreType scotype)

core::Real	get_score (core::pose::Pose const &pose_in, core::scoring::constraints::ConstraintCOPs csts) const

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	~Filter () override

virtual core::Real	report_sm (core::pose::Pose const &) const
	used to report filter internals through a score or silent file More...

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual core::Real	score (core::pose::Pose &pose)

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Types
typedef protocols::constraint_filters::ConstraintScoreCutoffFilter	Parent

typedef std::pair< protocols::hotspot_hashing::HotspotStubSetOP, std::pair< protocols::hotspot_hashing::HotspotStubOP, core::Size > >	StubSetStubPos

Private Attributes
hotspot_hashing::HotspotStubSetOP	stub_set_

std::string	resfile_

core::Real	cb_force_

core::Size	loop_start_

core::Size	loop_stop_

Additional Inherited Members
Public Types inherited from protocols::constraint_filters::ConstraintScoreCutoffFilter
typedef protocols::filters::Filter	parent

Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

◆ Parent

typedef protocols::constraint_filters::ConstraintScoreCutoffFilter protocols::protein_interface_design::filters::StubScoreLoopsFilter::Parent

private

◆ StubSetStubPos

typedef std::pair< protocols::hotspot_hashing::HotspotStubSetOP, std::pair< protocols::hotspot_hashing::HotspotStubOP, core::Size > > protocols::protein_interface_design::filters::StubScoreLoopsFilter::StubSetStubPos

private

Constructor & Destructor Documentation

◆ StubScoreLoopsFilter()

protocols::protein_interface_design::filters::StubScoreLoopsFilter::StubScoreLoopsFilter ( )

default ctor

References core::scoring::backbone_stub_constraint, and protocols::constraint_filters::ConstraintScoreCutoffFilter::set_score_type().

◆ ~StubScoreLoopsFilter()

protocols::protein_interface_design::filters::StubScoreLoopsFilter::~StubScoreLoopsFilter ( )

overridedefault

Member Function Documentation

◆ class_name()

std::string protocols::protein_interface_design::filters::StubScoreLoopsFilter::class_name ( )

static

Referenced by protocols::protein_interface_design::filters::StubScoreLoopsFilterCreator::keyname(), name(), and provide_xml_schema().

◆ clone()

protocols::filters::FilterOP protocols::protein_interface_design::filters::StubScoreLoopsFilter::clone ( ) const

overridevirtual

Reimplemented from protocols::constraint_filters::ConstraintScoreCutoffFilter.

◆ fresh_instance()

protocols::filters::FilterOP protocols::protein_interface_design::filters::StubScoreLoopsFilter::fresh_instance ( ) const

overridevirtual

Reimplemented from protocols::constraint_filters::ConstraintScoreCutoffFilter.

◆ get_score()

core::Real protocols::protein_interface_design::filters::StubScoreLoopsFilter::get_score ( core::pose::Pose const & pose ) const

overridevirtual

Reimplemented from protocols::constraint_filters::ConstraintScoreCutoffFilter.

References protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover::generate_csts(), loop_start_, loop_stop_, resfile_, protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover::set_loop_start(), protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover::set_loop_stop(), protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover::set_resfile(), stub_set_, and protocols::protein_interface_design::filters::tr().

◆ name()

std::string protocols::protein_interface_design::filters::StubScoreLoopsFilter::name ( ) const

overridevirtual

Reimplemented from protocols::constraint_filters::ConstraintScoreCutoffFilter.

References class_name().

◆ parse_my_tag()

void protocols::protein_interface_design::filters::StubScoreLoopsFilter::parse_my_tag	(	utility::tag::TagCOP	,
		basic::datacache::DataMap &
	)

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::constraint_filters::ConstraintScoreCutoffFilter.

References cb_force_, loop_start_, loop_stop_, resfile_, stub_set_, and protocols::protein_interface_design::filters::tr().

◆ provide_xml_schema()

void protocols::protein_interface_design::filters::StubScoreLoopsFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::protein_interface_design::filters::StubScoreLoopsFilterCreator::provide_xml_schema().

Member Data Documentation

◆ cb_force_

core::Real protocols::protein_interface_design::filters::StubScoreLoopsFilter::cb_force_

private

Referenced by parse_my_tag().

◆ loop_start_

core::Size protocols::protein_interface_design::filters::StubScoreLoopsFilter::loop_start_

private

Referenced by get_score(), and parse_my_tag().

◆ loop_stop_

core::Size protocols::protein_interface_design::filters::StubScoreLoopsFilter::loop_stop_

private

Referenced by get_score(), and parse_my_tag().

◆ resfile_

std::string protocols::protein_interface_design::filters::StubScoreLoopsFilter::resfile_

private

Referenced by get_score(), and parse_my_tag().

◆ stub_set_

hotspot_hashing::HotspotStubSetOP protocols::protein_interface_design::filters::StubScoreLoopsFilter::stub_set_

private

Referenced by get_score(), and parse_my_tag().

The documentation for this class was generated from the following files:

src/protocols/protein_interface_design/filters/StubScoreLoopsFilter.hh
src/protocols/protein_interface_design/filters/StubScoreLoopsFilter.cc

Public Member Functions

Static Public Member Functions

Private Types

Private Attributes

Additional Inherited Members

Member Typedef Documentation

◆ Parent

◆ StubSetStubPos

Constructor & Destructor Documentation

◆ StubScoreLoopsFilter()

◆ ~StubScoreLoopsFilter()

Member Function Documentation

◆ class_name()

◆ clone()

◆ fresh_instance()

◆ get_score()

◆ name()

◆ parse_my_tag()

◆ provide_xml_schema()

Member Data Documentation

◆ cb_force_

◆ loop_start_

◆ loop_stop_

◆ resfile_

◆ stub_set_