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protocols::protein_interface_design::filters::StubScoreLoopsFilter Class Reference

#include <StubScoreLoopsFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::StubScoreLoopsFilter:
Inheritance graph
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Public Member Functions

 StubScoreLoopsFilter ()
 default ctor More...
 
 ~StubScoreLoopsFilter () override
 
protocols::filters::FilterOP clone () const override
 
protocols::filters::FilterOP fresh_instance () const override
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
 Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
 
std::string name () const override
 
core::Real get_score (core::pose::Pose const &pose) const override
 
- Public Member Functions inherited from protocols::constraint_filters::ConstraintScoreCutoffFilter
 ConstraintScoreCutoffFilter ()
 c-tor and More...
 
 ConstraintScoreCutoffFilter (core::Real cutoff_in)
 
void report (std::ostream &ostr, core::pose::Pose const &pose) const override
 
bool apply (core::pose::Pose const &pose) const override
 Returns true if the given pose passes the filter, false otherwise. In this case, the test is the result of the following comparison: sc <= cutoff Where cutoff is the cutoff set for this filter, and sc is the value of the ScoreType from the Pose Energies object. More...
 
void set_cutoff (core::Real cutoff_in)
 
void set_cutoff (core::pose::Pose const &pose)
 
core::Real cutoff () const
 
void set_constraints (core::scoring::constraints::ConstraintCOPs cst_in)
 
void set_score_type (core::scoring::ScoreType scotype)
 
core::Real get_score (core::pose::Pose const &pose_in, core::scoring::constraints::ConstraintCOPs csts) const
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
 ~Filter () override
 
virtual core::Real report_sm (core::pose::Pose const &) const
 used to report filter internals through a score or silent file More...
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual bool filter_provides_citation_info () const
 Does this filter provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool filter_is_unpublished () const
 Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static std::string class_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Private Types

typedef
protocols::constraint_filters::ConstraintScoreCutoffFilter 
Parent
 
typedef std::pair
< protocols::hotspot_hashing::HotspotStubSetOP,
std::pair
< protocols::hotspot_hashing::HotspotStubOP,
core::Size > > 
StubSetStubPos
 

Private Attributes

hotspot_hashing::HotspotStubSetOP stub_set_
 
std::string resfile_
 
core::Real cb_force_
 
core::Size loop_start_
 
core::Size loop_stop_
 

Additional Inherited Members

- Public Types inherited from protocols::constraint_filters::ConstraintScoreCutoffFilter
typedef protocols::filters::Filter parent
 
- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::StubScoreLoopsFilter::StubScoreLoopsFilter ( )
protocols::protein_interface_design::filters::StubScoreLoopsFilter::~StubScoreLoopsFilter ( )
overridedefault

Member Function Documentation

std::string protocols::protein_interface_design::filters::StubScoreLoopsFilter::class_name ( )
static
protocols::filters::FilterOP protocols::protein_interface_design::filters::StubScoreLoopsFilter::clone ( ) const
overridevirtual
protocols::filters::FilterOP protocols::protein_interface_design::filters::StubScoreLoopsFilter::fresh_instance ( ) const
overridevirtual
core::Real protocols::protein_interface_design::filters::StubScoreLoopsFilter::get_score ( core::pose::Pose const &  pose) const
overridevirtual
std::string protocols::protein_interface_design::filters::StubScoreLoopsFilter::name ( ) const
overridevirtual
void protocols::protein_interface_design::filters::StubScoreLoopsFilter::parse_my_tag ( utility::tag::TagCOP  ,
basic::datacache::DataMap &   
)
overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::constraint_filters::ConstraintScoreCutoffFilter.

References cb_force_, loop_start_, loop_stop_, resfile_, stub_set_, and protocols::protein_interface_design::filters::tr().

void protocols::protein_interface_design::filters::StubScoreLoopsFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static

Member Data Documentation

core::Real protocols::protein_interface_design::filters::StubScoreLoopsFilter::cb_force_
private

Referenced by parse_my_tag().

core::Size protocols::protein_interface_design::filters::StubScoreLoopsFilter::loop_start_
private

Referenced by get_score(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::StubScoreLoopsFilter::loop_stop_
private

Referenced by get_score(), and parse_my_tag().

std::string protocols::protein_interface_design::filters::StubScoreLoopsFilter::resfile_
private

Referenced by get_score(), and parse_my_tag().

hotspot_hashing::HotspotStubSetOP protocols::protein_interface_design::filters::StubScoreLoopsFilter::stub_set_
private

Referenced by get_score(), and parse_my_tag().


The documentation for this class was generated from the following files: