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Public Types | Public Member Functions | Private Attributes | List of all members
protocols::protein_interface_design::ReportPSSMDifferences Class Reference

#include <ReportPSSMDifference.hh>

Public Types

typedef core::Size Size
 
typedef core::Real Real
 
typedef core::pose::Pose Pose
 

Public Member Functions

 ReportPSSMDifferences ()
 
 ReportPSSMDifferences (ReportPSSMDifferences const &init)
 
core::Real calculate (Pose const &pose1, Pose const &pose2, core::pack::task::PackerTaskCOP const &task)
 
std::map< core::Size, std::string > const & res_name1 () const
 
utility::vector1< std::pair< core::chemical::AA, utility::vector1< Real > > > const & pssm_ () const
 
bool load_pssm_data (std::string const &native_filename)
 
virtual ~ReportPSSMDifferences ()=default
 

Private Attributes

std::map< core::Size, std::string > res_name1_
 
utility::vector1< std::pair< core::chemical::AA, utility::vector1< Real > > > pssm_data_
 

Member Typedef Documentation

◆ Pose

◆ Real

◆ Size

Constructor & Destructor Documentation

◆ ReportPSSMDifferences() [1/2]

protocols::protein_interface_design::ReportPSSMDifferences::ReportPSSMDifferences ( )
inline

◆ ReportPSSMDifferences() [2/2]

protocols::protein_interface_design::ReportPSSMDifferences::ReportPSSMDifferences ( ReportPSSMDifferences const &  init)
inline

◆ ~ReportPSSMDifferences()

virtual protocols::protein_interface_design::ReportPSSMDifferences::~ReportPSSMDifferences ( )
virtualdefault

Member Function Documentation

◆ calculate()

core::Real protocols::protein_interface_design::ReportPSSMDifferences::calculate ( Pose const &  pose1,
Pose const &  pose2,
core::pack::task::PackerTaskCOP const &  task 
)

◆ load_pssm_data()

bool protocols::protein_interface_design::ReportPSSMDifferences::load_pssm_data ( std::string const &  native_filename)

◆ pssm_()

utility::vector1< std::pair< core::chemical::AA, utility::vector1< Real > > > const& protocols::protein_interface_design::ReportPSSMDifferences::pssm_ ( ) const
inline

References pssm_data_.

◆ res_name1()

std::map< core::Size, std::string > const& protocols::protein_interface_design::ReportPSSMDifferences::res_name1 ( ) const
inline

References res_name1_.

Member Data Documentation

◆ pssm_data_

utility::vector1< std::pair< core::chemical::AA, utility::vector1< Real > > > protocols::protein_interface_design::ReportPSSMDifferences::pssm_data_
private

Referenced by load_pssm_data(), and pssm_().

◆ res_name1_

std::map< core::Size, std::string > protocols::protein_interface_design::ReportPSSMDifferences::res_name1_
private

Referenced by res_name1().


The documentation for this class was generated from the following files: