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Public Member Functions | Static Public Member Functions | Private Attributes | List of all members
protocols::task_operations::SelectBySASAOperation Class Reference

#include <SelectBySASAOperation.hh>

Inheritance diagram for protocols::task_operations::SelectBySASAOperation:
Inheritance graph
[legend]

Public Member Functions

 SelectBySASAOperation (std::string const &mode="sc", std::string const &state="monomer", core::Real probe_radius=2.2, core::Real core_asa=0, core::Real surface_asa=30, std::string const &jump_nums="1", std::string const &sym_dof_names="", bool core=0, bool boundary=0, bool surface=0, bool verbose=0)
 
 ~SelectBySASAOperation () override
 
core::pack::task::operation::TaskOperationOP clone () const override
 Create another task operation of the type matching the most-derived version of the class. More...
 
void apply (core::pose::Pose const &, core::pack::task::PackerTask &) const override
 Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
 
void parse_tag (TagCOP tag, DataMap &) override
 Used to parse an xml-like tag to load parameters and properties. More...
 
- Public Member Functions inherited from core::pack::task::operation::TaskOperation
 ~TaskOperation () override
 
virtual bool task_operation_provides_citation_info () const
 Does this task operation provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool task_operation_is_unpublished () const
 Does this task_operation indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 
static std::string keyname ()
 

Private Attributes

std::string mode_
 
std::string state_
 
core::Real probe_radius_
 
core::Real core_asa_
 
core::Real surface_asa_
 
std::string jump_nums_
 
std::string sym_dof_names_
 
bool core_
 
bool boundary_
 
bool surface_
 
bool verbose_
 

Additional Inherited Members

- Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP TagCOP
 
typedef basic::datacache::DataMap DataMap
 
typedef pose::Pose Pose
 

Constructor & Destructor Documentation

protocols::task_operations::SelectBySASAOperation::SelectBySASAOperation ( std::string const &  mode = "sc",
std::string const &  state = "monomer",
core::Real  probe_radius = 2.2,
core::Real  core_asa = 0,
core::Real  surface_asa = 30,
std::string const &  jump_nums = "1",
std::string const &  sym_dof_names = "",
bool  core = 0,
bool  boundary = 0,
bool  surface = 0,
bool  verbose = 0 
)
protocols::task_operations::SelectBySASAOperation::~SelectBySASAOperation ( )
overridedefault

Member Function Documentation

void protocols::task_operations::SelectBySASAOperation::apply ( core::pose::Pose const &  ,
core::pack::task::PackerTask  
) const
overridevirtual
core::pack::task::operation::TaskOperationOP protocols::task_operations::SelectBySASAOperation::clone ( ) const
overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

static std::string protocols::task_operations::SelectBySASAOperation::keyname ( )
inlinestatic
void protocols::task_operations::SelectBySASAOperation::parse_tag ( TagCOP  tag,
DataMap  
)
overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References boundary_, core_, core_asa_, jump_nums_, mode_, probe_radius_, state_, surface_, surface_asa_, sym_dof_names_, and verbose_.

void protocols::task_operations::SelectBySASAOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static

Member Data Documentation

bool protocols::task_operations::SelectBySASAOperation::boundary_
private

Referenced by apply(), and parse_tag().

bool protocols::task_operations::SelectBySASAOperation::core_
private

Referenced by apply(), and parse_tag().

core::Real protocols::task_operations::SelectBySASAOperation::core_asa_
private

Referenced by apply(), and parse_tag().

std::string protocols::task_operations::SelectBySASAOperation::jump_nums_
private

Referenced by apply(), and parse_tag().

std::string protocols::task_operations::SelectBySASAOperation::mode_
private

Referenced by apply(), and parse_tag().

core::Real protocols::task_operations::SelectBySASAOperation::probe_radius_
private

Referenced by apply(), and parse_tag().

std::string protocols::task_operations::SelectBySASAOperation::state_
private

Referenced by apply(), and parse_tag().

bool protocols::task_operations::SelectBySASAOperation::surface_
private

Referenced by apply(), and parse_tag().

core::Real protocols::task_operations::SelectBySASAOperation::surface_asa_
private

Referenced by apply(), and parse_tag().

std::string protocols::task_operations::SelectBySASAOperation::sym_dof_names_
private

Referenced by apply(), and parse_tag().

bool protocols::task_operations::SelectBySASAOperation::verbose_
private

Referenced by apply(), and parse_tag().


The documentation for this class was generated from the following files: