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DockIntoDensityMover.cc File Reference

protocols for folding into density More...

#include <protocols/electron_density/DockIntoDensityMover.hh>
#include <protocols/electron_density/util.hh>
#include <basic/options/keys/edensity.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/AtomType.hh>
#include <core/conformation/Residue.hh>
#include <core/fragment/FragData.hh>
#include <core/fragment/FragmentIO.hh>
#include <core/fragment/FragSet.hh>
#include <core/fragment/Frame.hh>
#include <core/fragment/FrameIterator.hh>
#include <core/fragment/util.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentFileOptions.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/io/AtomInformation.hh>
#include <core/io/StructFileRep.hh>
#include <core/io/StructFileRepOptions.fwd.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/Jump.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pose/util.hh>
#include <core/scoring/electron_density/ElectronDensity.hh>
#include <core/scoring/electron_density/util.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/rms_util.tmpl.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <numeric/xyzMatrix.hh>
#include <numeric/xyzVector.hh>
#include <numeric/xyzVector.io.hh>
#include <numeric/fourier/SHT.hh>
#include <ObjexxFCL/format.hh>
#include <protocols/electron_density/SetupForDensityScoringMover.hh>
#include <protocols/jd2/util.hh>
#include <protocols/moves/Mover.fwd.hh>
#include <protocols/rigid/RB_geometry.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>
#include <utility/file/file_sys_util.hh>
#include <utility/file/FileName.hh>
#include <utility/io/izstream.hh>
#include <utility/io/ozstream.hh>
#include <utility/string_util.hh>
#include <utility/tag/Tag.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>

Classes

struct  protocols::electron_density::ScoredPoint
 
struct  protocols::electron_density::ScoredPointCmptr
 

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::electron_density
 

Functions

static basic::Tracer protocols::electron_density::TR ("protocols.electron_density.DockIntoDensityMover")
 
core::Real protocols::electron_density::get_rms (core::pose::PoseOP r1, core::pose::PoseOP r2, DensitySymmInfo const &d)
 
core::Real protocols::electron_density::get_rms (RefinementResult r1, RefinementResult r2, DensitySymmInfo const &d)
 
core::Real protocols::electron_density::get_rot_angle (numeric::xyzMatrix< core::Real > R)
 

Detailed Description

protocols for folding into density

Author
Frank DiMaio