Rosetta  2020.46
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Namespaces | Functions
SSMotifFinderFilter.cc File Reference
#include <protocols/simple_filters/SSMotifFinderFilter.hh>
#include <protocols/simple_filters/SSMotifFinderFilterCreator.hh>
#include <utility/tag/Tag.hh>
#include <basic/Tracer.hh>
#include <core/pose/Pose.hh>
#include <core/pose/selection.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <fstream>
#include <utility/io/izstream.hh>
#include <sstream>
#include <core/kinematics/FoldTree.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/kinematics/Jump.hh>
#include <core/import_pose/import_pose.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <core/kinematics/Edge.hh>
#include <core/pose/PDBInfo.hh>
#include <protocols/toolbox/superimpose.hh>
#include <utility/vector1.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/filters/filter_schemas.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::simple_filters
 

Functions

static basic::Tracer protocols::simple_filters::TR ("protocols.simple_filters.SSMotifFinder")
 
core::Real protocols::simple_filters::atom_distance (core::conformation::Residue const &r1, std::string const &a1, core::conformation::Residue const &r2, std::string const &a2)
 compute the atomic distance between two atoms on two residues More...
 
core::Real protocols::simple_filters::res_rmsd (utility::vector1< core::Size > const pose_res_for_rmsd, utility::vector1< core::Size > const template_res_for_rmsd, core::pose::Pose const &copy_pose, core::pose::Pose const &template_pose)
 
void protocols::simple_filters::write_to_file (std::string const &filename, core::Size const stem1, core::Size const stem2, core::Real const rmsd, std::string const &pdbname, core::pose::Pose const &pose)
 
utility::vector1
< numeric::xyzVector
< core::Real > > 
protocols::simple_filters::coords (core::pose::Pose const &pose, utility::vector1< core::Size > const positions)
 

Detailed Description

Author
Ravit Netzer & Sarel Fleishman