protocols::backbone_moves::local_backbone_mover::Residue Class Reference

Residue is a helper class for FreePeptide. More...

#include <FreePeptide.hh>

Inheritance diagram for protocols::backbone_moves::local_backbone_mover::Residue:

Public Member Functions
	Residue (core::Size seqpos, Real n_ca_bond, Real ca_c_bond, Real c_n_bond, Real n_ca_c_angle, Real ca_c_n_angle, Real c_n_ca_angle, Real phi, Real psi, Real omega)
	Residue (core::Size seqpos, core::pose::Pose const &pose)
void	apply_to_pose (core::pose::Pose &pose)
void	seqpos (core::Size seqpos)
core::Size	seqpos ()
void	n_ca_bond (Real n_ca_bond)
Real	n_ca_bond ()
void	ca_c_bond (Real ca_c_bond)
Real	ca_c_bond ()
void	c_n_bond (Real c_n_bond)
Real	c_n_bond ()
void	n_ca_c_angle (Real n_ca_c_angle)
Real	n_ca_c_angle ()
void	ca_c_n_angle (Real ca_c_n_angle)
Real	ca_c_n_angle ()
void	c_n_ca_angle (Real c_n_ca_angle)
Real	c_n_ca_angle ()
void	phi (Real phi)
Real	phi ()
void	psi (Real psi)
Real	psi ()
void	omega (Real omega)
Real	omega ()
void	n_xyz (xyzVector< Real > n_xyz)
xyzVector< Real >	n_xyz ()
void	ca_xyz (xyzVector< Real > ca_xyz)
xyzVector< Real >	ca_xyz ()
void	c_xyz (xyzVector< Real > c_xyz)
xyzVector< Real >	c_xyz ()

Private Attributes
core::Size	seqpos_
Real	n_ca_bond_
Real	ca_c_bond_
Real	c_n_bond_
Real	n_ca_c_angle_
Real	ca_c_n_angle_
Real	c_n_ca_angle_
Real	phi_
Real	psi_
Real	omega_
xyzVector< Real >	n_xyz_
xyzVector< Real >	ca_xyz_
xyzVector< Real >	c_xyz_

Detailed Description

Residue is a helper class for FreePeptide.

Constructor & Destructor Documentation

Residue() [1/2]

protocols::backbone_moves::local_backbone_mover::Residue::Residue ( core::Size  seqpos, Real  n_ca_bond, Real  ca_c_bond, Real  c_n_bond, Real  n_ca_c_angle, Real  ca_c_n_angle, Real  c_n_ca_angle, Real  phi, Real  psi, Real  omega  )

inline

Residue() [2/2]

protocols::backbone_moves::local_backbone_mover::Residue::Residue	(	core::Size	seqpos,
		core::pose::Pose const &	pose
	)

References core::conformation::Conformation::bond_angle(), core::conformation::Conformation::bond_length(), c_n_bond_, c_n_ca_angle_, c_xyz_, ca_c_bond_, ca_c_n_angle_, ca_xyz_, core::pose::Pose::conformation(), n_ca_bond_, n_ca_c_angle_, n_xyz_, core::pose::Pose::omega(), omega_, core::pose::Pose::phi(), phi_, core::pose::Pose::psi(), psi_, seqpos(), seqpos_, and core::pose::Pose::xyz().

Member Function Documentation

apply_to_pose()

void protocols::backbone_moves::local_backbone_mover::Residue::apply_to_pose

(

core::pose::Pose &

pose

)

References c_n_bond_, c_n_ca_angle_, ca_c_bond_, ca_c_n_angle_, core::pose::Pose::conformation(), n_ca_bond_, n_ca_c_angle_, omega_, phi_, psi_, seqpos_, core::conformation::Conformation::set_bond_angle(), core::conformation::Conformation::set_bond_length(), core::pose::Pose::set_omega(), core::pose::Pose::set_phi(), and core::pose::Pose::set_psi().

c_n_bond() [1/2]

Real protocols::backbone_moves::local_backbone_mover::Residue::c_n_bond ( )

inline

References c_n_bond_.

Referenced by c_n_bond().

c_n_bond() [2/2]

void protocols::backbone_moves::local_backbone_mover::Residue::c_n_bond ( Real  c_n_bond )

inline

References c_n_bond(), and c_n_bond_.

c_n_ca_angle() [1/2]

Real protocols::backbone_moves::local_backbone_mover::Residue::c_n_ca_angle ( )

inline

References c_n_ca_angle_.

Referenced by c_n_ca_angle().

c_n_ca_angle() [2/2]

void protocols::backbone_moves::local_backbone_mover::Residue::c_n_ca_angle ( Real  c_n_ca_angle )

inline

References c_n_ca_angle(), and c_n_ca_angle_.

c_xyz() [1/2]

xyzVector<Real> protocols::backbone_moves::local_backbone_mover::Residue::c_xyz ( )

inline

References c_xyz_.

Referenced by c_xyz().

c_xyz() [2/2]

void protocols::backbone_moves::local_backbone_mover::Residue::c_xyz ( xyzVector< Real >  c_xyz )

inline

References c_xyz(), and c_xyz_.

ca_c_bond() [1/2]

Real protocols::backbone_moves::local_backbone_mover::Residue::ca_c_bond ( )

inline

References ca_c_bond_.

Referenced by ca_c_bond().

ca_c_bond() [2/2]

void protocols::backbone_moves::local_backbone_mover::Residue::ca_c_bond ( Real  ca_c_bond )

inline

References ca_c_bond(), and ca_c_bond_.

ca_c_n_angle() [1/2]

Real protocols::backbone_moves::local_backbone_mover::Residue::ca_c_n_angle ( )

inline

References ca_c_n_angle_.

Referenced by ca_c_n_angle().

ca_c_n_angle() [2/2]

void protocols::backbone_moves::local_backbone_mover::Residue::ca_c_n_angle ( Real  ca_c_n_angle )

inline

References ca_c_n_angle(), and ca_c_n_angle_.

ca_xyz() [1/2]

xyzVector<Real> protocols::backbone_moves::local_backbone_mover::Residue::ca_xyz ( )

inline

References ca_xyz_.

Referenced by ca_xyz().

ca_xyz() [2/2]

void protocols::backbone_moves::local_backbone_mover::Residue::ca_xyz ( xyzVector< Real >  ca_xyz )

inline

References ca_xyz(), and ca_xyz_.

n_ca_bond() [1/2]

Real protocols::backbone_moves::local_backbone_mover::Residue::n_ca_bond ( )

inline

References n_ca_bond_.

Referenced by n_ca_bond().

n_ca_bond() [2/2]

void protocols::backbone_moves::local_backbone_mover::Residue::n_ca_bond ( Real  n_ca_bond )

inline

References n_ca_bond(), and n_ca_bond_.

n_ca_c_angle() [1/2]

Real protocols::backbone_moves::local_backbone_mover::Residue::n_ca_c_angle ( )

inline

References n_ca_c_angle_.

Referenced by n_ca_c_angle().

n_ca_c_angle() [2/2]

void protocols::backbone_moves::local_backbone_mover::Residue::n_ca_c_angle ( Real  n_ca_c_angle )

inline

References n_ca_c_angle(), and n_ca_c_angle_.

n_xyz() [1/2]

xyzVector<Real> protocols::backbone_moves::local_backbone_mover::Residue::n_xyz ( )

inline

References n_xyz_.

Referenced by n_xyz().

n_xyz() [2/2]

void protocols::backbone_moves::local_backbone_mover::Residue::n_xyz ( xyzVector< Real >  n_xyz )

inline

References n_xyz(), and n_xyz_.

omega() [1/2]

Real protocols::backbone_moves::local_backbone_mover::Residue::omega ( )

inline

References omega_.

Referenced by omega().

omega() [2/2]

void protocols::backbone_moves::local_backbone_mover::Residue::omega ( Real  omega )

inline

References omega(), and omega_.

phi() [1/2]

Real protocols::backbone_moves::local_backbone_mover::Residue::phi ( )

inline

References phi_.

Referenced by phi().

phi() [2/2]

void protocols::backbone_moves::local_backbone_mover::Residue::phi ( Real  phi )

inline

References phi(), and phi_.

psi() [1/2]

Real protocols::backbone_moves::local_backbone_mover::Residue::psi ( )

inline

References psi_.

Referenced by psi().

psi() [2/2]

void protocols::backbone_moves::local_backbone_mover::Residue::psi ( Real  psi )

inline

References psi(), and psi_.

seqpos() [1/2]

core::Size protocols::backbone_moves::local_backbone_mover::Residue::seqpos ( )

inline

References seqpos_.

Referenced by Residue(), and seqpos().

seqpos() [2/2]

void protocols::backbone_moves::local_backbone_mover::Residue::seqpos ( core::Size  seqpos )

inline

References seqpos(), and seqpos_.

Member Data Documentation

c_n_bond_

Real protocols::backbone_moves::local_backbone_mover::Residue::c_n_bond_

private

Referenced by apply_to_pose(), c_n_bond(), and Residue().

c_n_ca_angle_

Real protocols::backbone_moves::local_backbone_mover::Residue::c_n_ca_angle_

private

Referenced by apply_to_pose(), c_n_ca_angle(), and Residue().

c_xyz_

xyzVector<Real> protocols::backbone_moves::local_backbone_mover::Residue::c_xyz_

private

Referenced by c_xyz(), and Residue().

ca_c_bond_

Real protocols::backbone_moves::local_backbone_mover::Residue::ca_c_bond_

private

Referenced by apply_to_pose(), ca_c_bond(), and Residue().

ca_c_n_angle_

Real protocols::backbone_moves::local_backbone_mover::Residue::ca_c_n_angle_

private

Referenced by apply_to_pose(), ca_c_n_angle(), and Residue().

ca_xyz_

xyzVector<Real> protocols::backbone_moves::local_backbone_mover::Residue::ca_xyz_

private

Referenced by ca_xyz(), and Residue().

n_ca_bond_

Real protocols::backbone_moves::local_backbone_mover::Residue::n_ca_bond_

private

Referenced by apply_to_pose(), n_ca_bond(), and Residue().

n_ca_c_angle_

Real protocols::backbone_moves::local_backbone_mover::Residue::n_ca_c_angle_

private

Referenced by apply_to_pose(), n_ca_c_angle(), and Residue().

n_xyz_

xyzVector<Real> protocols::backbone_moves::local_backbone_mover::Residue::n_xyz_

private

Referenced by n_xyz(), and Residue().

omega_

Real protocols::backbone_moves::local_backbone_mover::Residue::omega_

private

Referenced by apply_to_pose(), omega(), and Residue().

phi_

Real protocols::backbone_moves::local_backbone_mover::Residue::phi_

private

Referenced by apply_to_pose(), phi(), and Residue().

psi_

Real protocols::backbone_moves::local_backbone_mover::Residue::psi_

private

Referenced by apply_to_pose(), psi(), and Residue().

seqpos_

core::Size protocols::backbone_moves::local_backbone_mover::Residue::seqpos_

private

Referenced by apply_to_pose(), Residue(), and seqpos().

---

The documentation for this class was generated from the following files:

• src/protocols/backbone_moves/local_backbone_mover/FreePeptide.hh
• src/protocols/backbone_moves/local_backbone_mover/FreePeptide.cc