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protocols::evolution::EvolutionaryDynamicsMover Member List

This is the complete list of members for protocols::evolution::EvolutionaryDynamicsMover, including all inherited members.

accept(Pose &pose, utility::vector1< core::Real > const &provisional_scores, protocols::moves::MCA const mca_status)protocols::monte_carlo::GenericMonteCarloMover
accept_counter() const protocols::monte_carlo::GenericMonteCarloMoverinline
adaptation_period(core::Size const a)protocols::monte_carlo::GenericMonteCarloMoverinline
adaptation_period() const protocols::monte_carlo::GenericMonteCarloMoverinline
adaptive() const protocols::monte_carlo::GenericMonteCarloMoverinline
adaptive_movers(bool const a)protocols::monte_carlo::GenericMonteCarloMoverinline
adaptive_movers() const protocols::monte_carlo::GenericMonteCarloMoverinline
add_filter(FilterOP filter, bool const adaptive, Real const temp, String const &sample_type, bool rank_by=false)protocols::monte_carlo::GenericMonteCarloMover
add_trigger(const GenericMonteCarloMoverTrigger &trigger)protocols::monte_carlo::GenericMonteCarloMover
apply(Pose &pose) overrideprotocols::evolution::EvolutionaryDynamicsMovervirtual
boltz_rank() const protocols::monte_carlo::GenericMonteCarloMoverinline
boltzmann(Pose &pose, utility::vector1< core::Real > const &random_nums) overrideprotocols::evolution::EvolutionaryDynamicsMovervirtual
protocols::monte_carlo::GenericMonteCarloMover::boltzmann(Pose &pose)protocols::monte_carlo::GenericMonteCarloMover
branch_length(core::Real const m)protocols::evolution::EvolutionaryDynamicsMoverinline
branch_length() const protocols::evolution::EvolutionaryDynamicsMoverinline
branch_length_protocols::evolution::EvolutionaryDynamicsMoverprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const overrideprotocols::evolution::EvolutionaryDynamicsMovervirtual
create()protocols::moves::Movervirtual
current_score() const protocols::monte_carlo::GenericMonteCarloMover
DataMap typedefprotocols::evolution::EvolutionaryDynamicsMover
define_composition_schema(utility::tag::XMLSchemaDefinition &)protocols::monte_carlo::GenericMonteCarloMoverstatic
disable_fitness_evaluation(bool const d)protocols::evolution::EvolutionaryDynamicsMoverinline
disable_fitness_evaluation() const protocols::evolution::EvolutionaryDynamicsMoverinline
disable_fitness_evaluation_protocols::evolution::EvolutionaryDynamicsMoverprivate
drift() const protocols::monte_carlo::GenericMonteCarloMoverinline
EvolutionaryDynamicsMover()protocols::evolution::EvolutionaryDynamicsMover
FilterOP typedefprotocols::evolution::EvolutionaryDynamicsMover
filters() const protocols::monte_carlo::GenericMonteCarloMoverinline
fire_all_triggers(core::Size cycle, core::Size num_cycles, const Pose &pose, ScoreFunctionOP scoring)protocols::monte_carlo::GenericMonteCarloMoverprotected
fresh_instance() const overrideprotocols::evolution::EvolutionaryDynamicsMovervirtual
generate_random() const protocols::monte_carlo::GenericMonteCarloMoverprotected
GenericMonteCarloMover()protocols::monte_carlo::GenericMonteCarloMover
GenericMonteCarloMover(core::Size const maxtrials, core::Size const max_accepted_trials, core::Size const task_scaling, MoverOP const &mover, Real const temperature=0.0, String const &sample_type="low", bool const drift=true)protocols::monte_carlo::GenericMonteCarloMover
GenericMonteCarloMover(core::Size const maxtrials, core::Size const max_accepted_trials, core::Size const task_scaling, MoverOP const &mover, TaskFactoryOP factory_in, Real const temperature=0.0, String const &sample_type="low", bool const drift=true)protocols::monte_carlo::GenericMonteCarloMover
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const overrideprotocols::evolution::EvolutionaryDynamicsMovervirtual
get_native_pose() const protocols::moves::Mover
get_self_ptr() const protocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() const protocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() const protocols::moves::Moverinline
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
initialize()protocols::monte_carlo::GenericMonteCarloMover
keep_filters() const protocols::monte_carlo::GenericMonteCarloMoverinline
last_accepted_pose() const protocols::monte_carlo::GenericMonteCarloMover
last_accepted_pose(core::pose::PoseOP pose)protocols::monte_carlo::GenericMonteCarloMover
last_accepted_score() const protocols::monte_carlo::GenericMonteCarloMover
last_accepted_score(core::Real const score)protocols::monte_carlo::GenericMonteCarloMoverinline
last_accepted_scores() const protocols::monte_carlo::GenericMonteCarloMoverinline
last_accepted_scores(utility::vector1< core::Real > const &scores)protocols::monte_carlo::GenericMonteCarloMoverinline
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
last_tested_scores() const protocols::monte_carlo::GenericMonteCarloMoverinline
load_trial_number_from_checkpoint(core::pose::Pose &)protocols::monte_carlo::GenericMonteCarloMover
lowest_score() const protocols::monte_carlo::GenericMonteCarloMover
lowest_score(core::Real const score)protocols::monte_carlo::GenericMonteCarloMoverinline
lowest_score_pose() const protocols::monte_carlo::GenericMonteCarloMover
lowest_score_pose(core::pose::PoseOP pose)protocols::monte_carlo::GenericMonteCarloMover
lowest_scores() const protocols::monte_carlo::GenericMonteCarloMoverinline
lowest_scores(utility::vector1< core::Real > const &scores)protocols::monte_carlo::GenericMonteCarloMoverinline
max_accepted_trials() const protocols::monte_carlo::GenericMonteCarloMoverinline
maxtrials() const protocols::monte_carlo::GenericMonteCarloMoverinline
mc_accpeted() const protocols::monte_carlo::GenericMonteCarloMover
mover() const overrideprotocols::monte_carlo::GenericMonteCarloMoverinlinevirtual
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
mover_name()protocols::evolution::EvolutionaryDynamicsMoverstatic
mover_stopping_condition() const protocols::monte_carlo::GenericMonteCarloMoverinline
MoverApplyingMover(std::string const &name)protocols::moves::MoverApplyingMoverinline
MoverApplyingMover(MoverApplyingMover const &)=defaultprotocols::moves::MoverApplyingMover
MoverOP typedefprotocols::evolution::EvolutionaryDynamicsMover
mutation_rate(core::Real const m)protocols::evolution::EvolutionaryDynamicsMoverinline
mutation_rate() const protocols::evolution::EvolutionaryDynamicsMoverinline
mutation_rate_protocols::evolution::EvolutionaryDynamicsMoverprivate
n_nucleotide_mut_trials_corrected(core::Real const n)protocols::evolution::EvolutionaryDynamicsMoverinline
n_nucleotide_mut_trials_corrected() const protocols::evolution::EvolutionaryDynamicsMoverinline
n_nucleotide_mut_trials_corrected_protocols::evolution::EvolutionaryDynamicsMoverprivate
name()protocols::moves::Moverinlinestatic
num_designable(Pose &pose, PackerTaskOP &task)protocols::monte_carlo::GenericMonteCarloMover
num_rejections() const protocols::monte_carlo::GenericMonteCarloMoverinline
num_rejections_protocols::monte_carlo::GenericMonteCarloMoverprotected
num_triggers() const protocols::monte_carlo::GenericMonteCarloMover
PackerTask typedefprotocols::evolution::EvolutionaryDynamicsMover
PackerTaskCOP typedefprotocols::evolution::EvolutionaryDynamicsMover
PackerTaskOP typedefprotocols::evolution::EvolutionaryDynamicsMover
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) overrideprotocols::evolution::EvolutionaryDynamicsMovervirtual
parse_task_operations(TagCOP, basic::datacache::DataMap const &)protocols::monte_carlo::GenericMonteCarloMovervirtual
ParsedProtocolOP typedefprotocols::evolution::EvolutionaryDynamicsMover
population_size(core::Real const s)protocols::evolution::EvolutionaryDynamicsMoverinline
population_size() const protocols::evolution::EvolutionaryDynamicsMoverinline
population_size_protocols::evolution::EvolutionaryDynamicsMoverprivate
Pose typedefprotocols::evolution::EvolutionaryDynamicsMover
PoseCOP typedefprotocols::moves::Mover
PoseOP typedefprotocols::evolution::EvolutionaryDynamicsMover
preapply() const protocols::monte_carlo::GenericMonteCarloMoverinline
progress_file() const protocols::monte_carlo::GenericMonteCarloMoverinlineprotected
progress_file(std::string const &s)protocols::monte_carlo::GenericMonteCarloMoverinlineprotected
provide_citation_info(basic::citation_manager::CitationCollectionList &) const overrideprotocols::monte_carlo::GenericMonteCarloMovervirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::evolution::EvolutionaryDynamicsMoverstatic
Real typedefprotocols::evolution::EvolutionaryDynamicsMover
recover_low(Pose &pose)protocols::monte_carlo::GenericMonteCarloMover
recover_low() const protocols::monte_carlo::GenericMonteCarloMoverinline
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
remove_trigger(core::Size trigger_id)protocols::monte_carlo::GenericMonteCarloMover
reset(Pose &pose)protocols::monte_carlo::GenericMonteCarloMover
reset_baselines(bool const r)protocols::monte_carlo::GenericMonteCarloMoverinline
reset_baselines() const protocols::monte_carlo::GenericMonteCarloMoverinline
reset_status()protocols::moves::Mover
sample_types() const protocols::monte_carlo::GenericMonteCarloMoverinline
save_trial_number_to_checkpoint(core::Size const i) const protocols::monte_carlo::GenericMonteCarloMover
saved_accept_file_name() const protocols::monte_carlo::GenericMonteCarloMover
saved_accept_file_name(std::string const )protocols::monte_carlo::GenericMonteCarloMover
saved_trial_number_file() const protocols::monte_carlo::GenericMonteCarloMover
saved_trial_number_file(std::string const )protocols::monte_carlo::GenericMonteCarloMover
score_function() const protocols::monte_carlo::GenericMonteCarloMoverinline
ScoreFunction typedefprotocols::evolution::EvolutionaryDynamicsMover
ScoreFunctionOP typedefprotocols::evolution::EvolutionaryDynamicsMover
scorefxn() const protocols::monte_carlo::GenericMonteCarloMoverinline
scoring(Pose &pose)protocols::monte_carlo::GenericMonteCarloMoverprotected
set_boltz_rank(bool const boltz_rank)protocols::monte_carlo::GenericMonteCarloMover
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_drift(bool const drift)protocols::monte_carlo::GenericMonteCarloMover
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_keep_filters(bool const k)protocols::monte_carlo::GenericMonteCarloMoverinline
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_max_accepted_trials(core::Size const n_max_accepted_trial)protocols::monte_carlo::GenericMonteCarloMover
set_maxtrials(core::Size const ntrial)protocols::monte_carlo::GenericMonteCarloMover
set_mc_accepted(moves::MCA const m)protocols::monte_carlo::GenericMonteCarloMoverinlineprotected
set_mover(MoverOP mover) overrideprotocols::monte_carlo::GenericMonteCarloMovervirtual
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_preapply(bool const preapply=false)protocols::monte_carlo::GenericMonteCarloMover
set_recover_low(bool const recover_low)protocols::monte_carlo::GenericMonteCarloMover
set_sampletype(String const &type)protocols::monte_carlo::GenericMonteCarloMover
set_scorefxn(ScoreFunctionOP const &sfxn)protocols::monte_carlo::GenericMonteCarloMover
set_stop_sampling(bool const stop_sampling)protocols::monte_carlo::GenericMonteCarloMover
set_task_scaling(core::Size const scaling)protocols::monte_carlo::GenericMonteCarloMover
set_temperature(Real const temp)protocols::monte_carlo::GenericMonteCarloMover
set_type(std::string const &setting)protocols::moves::Moverinline
show(std::ostream &output=std::cout) const protocols::moves::Movervirtual
show_counters(std::ostream &out) const protocols::monte_carlo::GenericMonteCarloMover
show_scores(std::ostream &out) const protocols::monte_carlo::GenericMonteCarloMover
Size typedefprotocols::evolution::EvolutionaryDynamicsMover
stop_sampling() const protocols::monte_carlo::GenericMonteCarloMoverinline
stopping_condition(protocols::filters::FilterOP filter)protocols::monte_carlo::GenericMonteCarloMover
stopping_condition() const protocols::monte_carlo::GenericMonteCarloMover
String typedefprotocols::evolution::EvolutionaryDynamicsMover
Strings typedefprotocols::moves::Mover
Super typedefprotocols::evolution::EvolutionaryDynamicsMoverprivate
TagCOP typedefprotocols::evolution::EvolutionaryDynamicsMover
task_factory(core::pack::task::TaskFactoryOP tf)protocols::monte_carlo::GenericMonteCarloMover
task_factory() const protocols::monte_carlo::GenericMonteCarloMoverinline
task_scaling() const protocols::monte_carlo::GenericMonteCarloMoverinline
TaskFactoryOP typedefprotocols::evolution::EvolutionaryDynamicsMover
temperatures() const protocols::monte_carlo::GenericMonteCarloMoverinline
temperatures(utility::vector1< Real > const &temps)protocols::monte_carlo::GenericMonteCarloMoverinline
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
total_trials(core::Real const m)protocols::evolution::EvolutionaryDynamicsMoverinline
total_trials() const protocols::evolution::EvolutionaryDynamicsMoverinline
total_trials_protocols::evolution::EvolutionaryDynamicsMoverprivate
trial_counter() const protocols::monte_carlo::GenericMonteCarloMoverinline
trial_counter(core::Size const i)protocols::monte_carlo::GenericMonteCarloMoverinline
trial_counter_protocols::monte_carlo::GenericMonteCarloMoverprotected
type(const std::string &type_in)protocols::moves::Moverinline
type() const protocols::moves::Moverinline
~EvolutionaryDynamicsMover() overrideprotocols::evolution::EvolutionaryDynamicsMover
~GenericMonteCarloMover() overrideprotocols::monte_carlo::GenericMonteCarloMover
~MoverApplyingMover() override=defaultprotocols::moves::MoverApplyingMover