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protocols::frag_picker::scores Namespace Reference

Classes

class  ABEGO_SS_Score
 
class  AdaptiveScoreHistogram
 
class  AmbigCSScore
 scores a fragment by the root mean square deviation of Phi and Psi angles. More...
 
class  AtomBasedConstraintsScore
 A base class for all scoring methods that need atom coordinates. More...
 
class  AtomPairConstraintsData
 Holds data about a single distance constraint in the form AtomPairConstraintsScore needs. More...
 
class  AtomPairConstraintsScore
 Scores a fragment with a set of AtomPair constraints. More...
 
class  BFactor
 BFactor score counts identical residues. More...
 
class  CachingScoringMethod
 
class  ConstScore
 ConstScore adds a constant to the total score for each position. More...
 
class  CSScore
 scores a fragment by the root mean square deviation of Phi and Psi angles. More...
 
class  DihedralConstraintsScore
 Scores a fragment with a set of Dihedral constraints. More...
 
class  DisulfideDistance
 scores a fragment by the root mean square deviation of Phi and Psi angles. More...
 
class  DisulfideIdentity
 DisulfideIdentity score counts identical residues. More...
 
class  FourAtomsConstraintData
 Holds data about a single four-body constraint in the form usefull for InterbondAngleScore and DihedralConstraintsScore classes. More...
 
class  FragmentAllAtomCrmsd
 scores a fragment by its crmsd to the given reference structure More...
 
class  FragmentChunkCrms
 scores a fragment by its tmscore to the given reference structure More...
 
class  FragmentCrmsd
 scores a fragment by its crmsd to the given reference structure More...
 
class  FragmentCrmsdResDepth
 scores a fragment by its crmsd to the given reference structure More...
 
class  FragmentDME
 scores a fragment by its DME to the given reference structure More...
 
class  FragmentScoreManager
 holds particular score components, weights and calculates the total score for a fragment candidate More...
 
class  FragmentScoreMap
 holds all small scores (score components) for a given fragment More...
 
class  FragmentScoringMethod
 a fragment candidate score More...
 
class  GunnCost
 
class  GunnCostScore
 scores a fragment by its crmsd to the given reference structure More...
 
struct  GunnTuple
 
class  HydrophobicityProfileSimilarity
 scores a fragment by its hydrophobicity similarity More...
 
class  HydrophobicitySimilarity
 scores a fragment by its hydrophobicity similarity More...
 
class  InterbondAngleScore
 Scores a fragment with a set of Dihedral constraints. More...
 
class  JCoupling
 scores a fragment by the JCouplings More...
 
class  LAMBEGO_Similarity
 scores a fragment by torsion bin similarity More...
 
class  MakeABEGO_SS_Score
 Maker class that produces a new ABEGO_SS_Score object. More...
 
class  MakeAmbigCSScore
 Maker class that produces a new AmbigCSScore object. More...
 
class  MakeAtomPairConstraintsScore
 Maker class that produces a new AtomPairConstraintsScore object. More...
 
class  MakeBFactor
 Maker class that produces a new BFactor object. More...
 
class  MakeConstScore
 Maker class that produces a new ConstScore object. More...
 
class  MakeCSScore
 Maker class that produces a new CSScore object. More...
 
class  MakeDihedralConstraintsScore
 Maker class that produces a new DihedralConstraintsScore object. More...
 
class  MakeDisulfideDistance
 Matker class that produces a new DisulfideDistance object. More...
 
class  MakeDisulfideIdentity
 Maker class that produces a new DisulfideIdentity object. More...
 
class  MakeFragmentAllAtomCrmsd
 Maker class that produces a new FragmentAllAtomCrmsd object. More...
 
class  MakeFragmentChunkCrms
 Maker class that produces a new FragmentChunkCrms object. More...
 
class  MakeFragmentCrmsd
 Maker class that produces a new FragmentCrmsd object. More...
 
class  MakeFragmentCrmsdResDepth
 Maker class that produces a new FragmentCrmsdResDepth object. More...
 
class  MakeFragmentDME
 Maker class that produces a new FragmentDME object. More...
 
class  MakeFragmentScoringMethod
 a fragment candidate More...
 
class  MakeGunnCostScore
 Maker class that produces a new GunnCostScore object. More...
 
class  MakeHydrophobicityProfileSimilarity
 Maker class that produces a new HydrophobicityProfileSimilarity object. More...
 
class  MakeHydrophobicitySimilarity
 Maker class that produces a new HydrophobicitySimilarity object. More...
 
class  MakeInterbondAngleScore
 Maker class that produces a new InterbondAngleScore object. More...
 
class  MakeJCoupling
 Matker class that produces a new JCoupling object. More...
 
class  MakeLAMBEGO_Similarity
 Maker class that produces a new TorsionBin object. More...
 
class  MakeMidPhiOut
 Matker class that produces a new MidPhiOut object. More...
 
class  MakeMidPsiOut
 Matker class that produces a new MidPsiOut object. More...
 
class  MakePartialSecondarySimilarity
 Maker class that produces a new PartialSecondarySimilarity object. More...
 
class  MakePCS_FragDistance
 Matker class that produces a new PCS_FragDistance object. More...
 
class  MakePhi
 Maker class that produces a new Phi object. More...
 
class  MakePhiPsiRmsd
 Matker class that produces a new PhiPsiRmsd object. More...
 
class  MakePhiPsiSquareWell
 Matker class that produces a new PhiPsiSquareWell object. More...
 
class  MakeProfileScore
 
class  MakeProfileScoreBlosum62
 
class  MakeProfileScoreDistWeight
 
class  MakeProfileScoreL1
 
class  MakeProfileScoreStructL1
 
class  MakeProfileScoreSubMatrix
 
class  MakeProlinePhiScore
 Maker class that produces a new ProlinePhiScore object. More...
 
class  MakePsi
 Maker class that produces a new Psi object. More...
 
class  MakeRamaScore
 Maker class that produces a new RamaScore object. More...
 
class  MakeRDCScore
 Maker class that produces a new RDCScore object. More...
 
class  MakeScoreEValuator
 
class  MakeSecondaryIdentity
 Maker class that produces a new SecondaryIdentity object. More...
 
class  MakeSecondarySimilarity
 Maker class that produces a new SecondarySimilarity object. More...
 
class  MakeSequenceIdentity
 Maker class that produces a new SequenceIdentity object. More...
 
class  MakeSolventAccessibility
 Maker class that produces a new SolventAccessibility object. More...
 
class  MakeTalosSSSimilarity
 Maker class that produces a new TalosSSSimilarity object. More...
 
class  MakeTorsionBinSimilarity
 Maker class that produces a new TorsionBin object. More...
 
class  MidPhiOut
 scores a fragment by the root mean square deviation of Phi and Psi angles. More...
 
class  MidPsiOut
 scores a fragment by the root mean square deviation of Psi and Psi angles. More...
 
class  PartialSecondarySimilarity
 scores a fragment by secondary structure similarity The score for each position is P(H), P(L) or P(E) if a vall residue is within Helix, Loop or Extended secondary stucture element, respectively. P(H), P(L) and P(E) denotes the probability that a given residue in a query is within Helix, Loop or Extended secondary stucture element. The total score of a fragment is a simple sum of all positions; for N-mer fragment is a sum of N terms
If P(H), P(L) and P(E) probabilities takes only 1.0 and 0.0 values, result of this scoring function should be the same as SecondaryIdentity, although the later one is faster. More...
 
class  PCS_FragDistance
 scores a fragment by the root mean square deviation of Phi and Psi angles. More...
 
class  Phi
 scores a fragment by its predicted phi similarity More...
 
class  PhiPsiRmsd
 scores a fragment by the root mean square deviation of Phi and Psi angles. More...
 
class  PhiPsiSquareWell
 scores a fragment by the root mean square deviation of Phi and Psi angles. More...
 
class  ProfileScore
 a fragment candidate More...
 
class  ProfileScoreBlosum62
 a fragment candidate More...
 
class  ProfileScoreDistWeight
 a fragment candidate More...
 
class  ProfileScoreL1
 a fragment candidate More...
 
class  ProfileScoreStructL1
 a fragment candidate More...
 
class  ProfileScoreSubMatrix
 a fragment candidate More...
 
class  ProlinePhiScore
 ProlinePhiScore score counts identical residues. More...
 
class  Psi
 scores a fragment by its predicted psi similarity More...
 
class  PValuedFragmentScoreManager
 holds particular score components, weights and calculates the total score for a fragment candidate More...
 
class  RamaScore
 RamaScore score counts identical residues. More...
 
class  RDCScore
 scores a fragment by its crmsd to the given reference structure More...
 
class  ScoreEValuator
 Computes E-Value for a Profile object. More...
 
class  SecondaryIdentity
 SequenceIdentity score counts how many residues share the same secondary structure. More...
 
class  SecondarySimilarity
 scores a fragment by secondary structure similarity The score for each position is P(H), P(L) or P(E) if a vall residue is within Helix, Loop or Extended secondary stucture element, respectively. P(H), P(L) and P(E) denotes the probability that a given residue in a query is within Helix, Loop or Extended secondary stucture element. The total score of a fragment is a simple sum of all positions; for N-mer fragment is a sum of N terms
If P(H), P(L) and P(E) probabilities takes only 1.0 and 0.0 values, result of this scoring function should be the same as SecondaryIdentity, although the later one is faster. More...
 
class  SequenceIdentity
 SequenceIdentity score counts identical residues. More...
 
class  SolventAccessibility
 scores a fragment by its predicted solvent accessibility More...
 
class  TalosSSSimilarity
 scores a fragment by secondary structure similarity The score for each position is P(H), P(L) or P(E) if a vall residue is within Helix, Loop or Extended secondary stucture element, respectively. P(H), P(L) and P(E) denotes the probability that a given residue in a query is within Helix, Loop or Extended secondary stucture element. The total score of a fragment is a simple sum of all positions; for N-mer fragment is a sum of N terms
If P(H), P(L) and P(E) probabilities takes only 1.0 and 0.0 values, result of this scoring function should be the same as SecondaryIdentity, although the later one is faster. More...
 
class  TorsionBinSimilarity
 scores a fragment by torsion bin similarity More...
 

Typedefs

typedef utility::vector1
< utility::vector1< core::Real > > 
Matrix
 
typedef
utility::pointer::shared_ptr
< ABEGO_SS_Score
ABEGO_SS_ScoreOP
 
typedef
utility::pointer::shared_ptr
< ABEGO_SS_Score const > 
ABEGO_SS_ScoreCOP
 
typedef
utility::pointer::shared_ptr
< AdaptiveScoreHistogram
AdaptiveScoreHistogramOP
 
typedef
utility::pointer::shared_ptr
< AdaptiveScoreHistogram const > 
AdaptiveScoreHistogramCOP
 
typedef
utility::pointer::shared_ptr
< AtomBasedConstraintsScore
AtomBasedConstraintsScoreOP
 
typedef
utility::pointer::shared_ptr
< AtomBasedConstraintsScore
const > 
AtomBasedConstraintsScoreCOP
 
typedef
utility::pointer::shared_ptr
< AtomPairConstraintsScore
AtomPairConstraintsScoreOP
 
typedef
utility::pointer::shared_ptr
< AtomPairConstraintsScore
const > 
AtomPairConstraintsScoreCOP
 
typedef
utility::pointer::shared_ptr
< AtomPairConstraintsData
AtomPairConstraintsDataOP
 
typedef
utility::pointer::shared_ptr
< AtomPairConstraintsData
const > 
AtomPairConstraintsDataCOP
 
typedef
utility::pointer::shared_ptr
< CachingScoringMethod
CachingScoringMethodOP
 
typedef
utility::pointer::shared_ptr
< CachingScoringMethod const > 
CachingScoringMethodCOP
 
typedef
utility::pointer::shared_ptr
< CSScore
CSScoreOP
 
typedef
utility::pointer::shared_ptr
< CSScore const > 
CSScoreCOP
 
typedef
utility::pointer::shared_ptr
< DihedralConstraintsScore
DihedralConstraintsScoreOP
 
typedef
utility::pointer::shared_ptr
< DihedralConstraintsScore
const > 
DihedralConstraintsScoreCOP
 
typedef
utility::pointer::shared_ptr
< FourAtomsConstraintData
FourAtomsConstraintDataOP
 
typedef
utility::pointer::shared_ptr
< FourAtomsConstraintData
const > 
FourAtomsConstraintDataCOP
 
typedef
utility::pointer::shared_ptr
< FragmentScoreManager
FragmentScoreManagerOP
 
typedef
utility::pointer::shared_ptr
< FragmentScoreManager const > 
FragmentScoreManagerCOP
 
typedef
utility::pointer::shared_ptr
< FragmentScoreMap
FragmentScoreMapOP
 
typedef
utility::pointer::shared_ptr
< FragmentScoreMap const > 
FragmentScoreMapCOP
 
typedef
utility::pointer::shared_ptr
< FragmentScoringMethod
FragmentScoringMethodOP
 
typedef
utility::pointer::shared_ptr
< FragmentScoringMethod const > 
FragmentScoringMethodCOP
 
typedef
utility::pointer::shared_ptr
< MakeFragmentScoringMethod
MakeFragmentScoringMethodOP
 
typedef
utility::pointer::shared_ptr
< MakeFragmentScoringMethod
const > 
MakeFragmentScoringMethodCOP
 
typedef
utility::pointer::shared_ptr
< InterbondAngleScore
InterbondAngleScoreOP
 
typedef
utility::pointer::shared_ptr
< InterbondAngleScore const > 
InterbondAngleScoreCOP
 
typedef
utility::pointer::shared_ptr
< ProfileScore
ProfileScoreOP
 
typedef
utility::pointer::shared_ptr
< ProfileScore const > 
ProfileScoreCOP
 
typedef
utility::pointer::shared_ptr
< ProfileScoreL1
ProfileScoreL1OP
 
typedef
utility::pointer::shared_ptr
< ProfileScoreL1 const > 
ProfileScoreL1COP
 
typedef
utility::pointer::shared_ptr
< RamaScore
RamaScoreOP
 
typedef
utility::pointer::shared_ptr
< RamaScore const > 
RamaScoreCOP
 
typedef
utility::pointer::shared_ptr
< SecondarySimilarity
SecondarySimilarityOP
 
typedef
utility::pointer::shared_ptr
< SecondarySimilarity const > 
SecondarySimilarityCOP
 
typedef
utility::pointer::shared_ptr
< TorsionBinSimilarity
TorsionBinSimilarityOP
 
typedef
utility::pointer::shared_ptr
< TorsionBinSimilarity const > 
TorsionBinSimilarityCOP
 

Functions

static basic::Tracer trABEGO_SS_Score ("protocols.frag_picker.scores.ABEGO_SS_Score")
 
static basic::Tracer trAdaptiveScoreHistogram ("fragment.picking.scores.AdaptiveScoreHistogram")
 
static basic::Tracer trAmbigCSScore ("protocols.frag_picker.scores.AmbigCSScore")
 
static basic::Tracer trAtomBasedConstraintsScore ("fragment.picking.scores.AtomBasedConstraintsScore")
 
static basic::Tracer trAtomPairConstraintsScore ("fragment.picking.scores.AtomPairConstraintsScore")
 
static basic::Tracer trCSScore ("protocols.frag_picker.scores.CSScore")
 
static basic::Tracer trDihedralConstraintsScore ("fragment.picking.scores.DihedralConstraintsScore")
 
void create_cache (utility::vector1< core::Size > &frag_sizes, core::Size query_len, core::Size longest_vall_chunk, utility::vector1< Matrix > &cache)
 
void allocate_matrix (core::Size i_size, core::Size j_size, Matrix &dst)
 
void do_one_line (core::Size start_i, core::Size start_j, Matrix &small_scores, core::Size frag_len, Matrix &frag_scores)
 
void rolling_score (Matrix &small_scores, core::Size frag_len, Matrix &frag_scores)
 
static basic::Tracer trRmsScore ("protocols.frag_picker.scores.FragmentAllAtomCrmsd")
 
static basic::Tracer trTmScore ("protocols.frag_picker.scores.FragmentChunkCrms")
 
void sequencealign (core::sequence::SequenceOP seq1, core::sequence::SequenceOP seq2, FArray1D_int &seqmapping)
 
static basic::Tracer trRmsScore ("protocols.frag_picker.scores.FragmentCrmsd")
 
static basic::Tracer trRmsScore ("protocols.frag_picker.scores.FragmentCrmsdResDepth")
 
static basic::Tracer trDMEScore ("protocols.frag_picker.scores.FragmentDME")
 
bool sort_scores (FragmentScoringMethodOP elem1, FragmentScoringMethodOP elem2)
 
static basic::Tracer trGunnCost ("core.fragment.GunnCost")
 
static basic::Tracer trGunnScore ("protocols.frag_picker.scores.GunnCostScore")
 
static basic::Tracer trInterbondAngleScore ("fragment.picking.scores.InterbondAngleScore")
 
static basic::Tracer trJCoupling ("protocols.frag_picker.scores.JCoupling")
 
static basic::Tracer tr ("protocols.frag_picker.scores.LAMBEGO_Similarity")
 
static basic::Tracer trPartialSecondarySimilarity ("protocols.frag_picker.scores.PartialSecondarySimilarity")
 
static basic::Tracer trPhiPsiRmsd ("protocols.frag_picker.scores.PhiPsiRmsd")
 
static basic::Tracer tr ("protocols.frag_picker.scores.PhiPsiSquareWell")
 
static basic::Tracer trProfScore ("protocols.frag_picker.scores.ProfileScore")
 
static basic::Tracer trProfScoreBlosum62 ("protocols.frag_picker.scores.ProfileScoreBlosum62")
 
static basic::Tracer trProfScoreDistWeight ("protocols.frag_picker.scores.ProfileScoreDistWeight")
 
static basic::Tracer trProfScoreL1 ("protocols.frag_picker.scores.ProfileScoreL1")
 
static basic::Tracer trProfScoreL1 ("protocols.frag_picker.scores.ProfileScoreStructL1")
 
static basic::Tracer trProfScoreSubMatrix ("protocols.frag_picker.scores.ProfileScoreSubMatrix")
 
static basic::Tracer trRDCScore ("protocols.frag_picker.scores.RDCScore")
 
static basic::Tracer trProfScore ("protocols.frag_picker.scores.ScoreEValuator")
 
static basic::Tracer trSecondarySimilarity ("protocols.frag_picker.scores.SecondarySimilarity")
 
static basic::Tracer trTalosSSSimilarity ("protocols.frag_picker.scores.TalosSSSimilarity")
 
static basic::Tracer tr ("protocols.frag_picker.scores.TorsionBinSimilarity")
 

Typedef Documentation

typedef utility::pointer::shared_ptr< ABEGO_SS_Score const > protocols::frag_picker::scores::ABEGO_SS_ScoreCOP
typedef utility::pointer::shared_ptr< ABEGO_SS_Score > protocols::frag_picker::scores::ABEGO_SS_ScoreOP
typedef utility::pointer::shared_ptr< CSScore const > protocols::frag_picker::scores::CSScoreCOP
typedef utility::pointer::shared_ptr< CSScore > protocols::frag_picker::scores::CSScoreOP
typedef utility::pointer::shared_ptr<FragmentScoreMap const> protocols::frag_picker::scores::FragmentScoreMapCOP
typedef utility::vector1< utility::vector1< core::Real > > protocols::frag_picker::scores::Matrix
typedef utility::pointer::shared_ptr<ProfileScore const> protocols::frag_picker::scores::ProfileScoreCOP
typedef utility::pointer::shared_ptr< ProfileScoreL1 const > protocols::frag_picker::scores::ProfileScoreL1COP
typedef utility::pointer::shared_ptr< ProfileScoreL1 > protocols::frag_picker::scores::ProfileScoreL1OP
typedef utility::pointer::shared_ptr<ProfileScore> protocols::frag_picker::scores::ProfileScoreOP
typedef utility::pointer::shared_ptr< RamaScore const > protocols::frag_picker::scores::RamaScoreCOP
typedef utility::pointer::shared_ptr< RamaScore > protocols::frag_picker::scores::RamaScoreOP
typedef utility::pointer::shared_ptr< SecondarySimilarity const > protocols::frag_picker::scores::SecondarySimilarityCOP

Function Documentation

void protocols::frag_picker::scores::allocate_matrix ( core::Size  i_size,
core::Size  j_size,
Matrix dst 
)

Referenced by create_cache().

void protocols::frag_picker::scores::create_cache ( utility::vector1< core::Size > &  frag_sizes,
core::Size  query_len,
core::Size  longest_vall_chunk,
utility::vector1< Matrix > &  cache 
)
void protocols::frag_picker::scores::do_one_line ( core::Size  start_i,
core::Size  start_j,
Matrix small_scores,
core::Size  frag_len,
Matrix frag_scores 
)

References protocols::mean_field::min().

Referenced by rolling_score().

void protocols::frag_picker::scores::rolling_score ( Matrix small_scores,
core::Size  frag_len,
Matrix frag_scores 
)
void protocols::frag_picker::scores::sequencealign ( core::sequence::SequenceOP  seq1,
core::sequence::SequenceOP  seq2,
FArray1D_int &  seqmapping 
)
bool protocols::frag_picker::scores::sort_scores ( FragmentScoringMethodOP  elem1,
FragmentScoringMethodOP  elem2 
)
static basic::Tracer protocols::frag_picker::scores::tr ( "protocols.frag_picker.scores.TorsionBinSimilarity"  )
static
static basic::Tracer protocols::frag_picker::scores::tr ( "protocols.frag_picker.scores.LAMBEGO_Similarity"  )
static
static basic::Tracer protocols::frag_picker::scores::tr ( "protocols.frag_picker.scores.PhiPsiSquareWell"  )
static
static basic::Tracer protocols::frag_picker::scores::trABEGO_SS_Score ( "protocols.frag_picker.scores.ABEGO_SS_Score"  )
static
static basic::Tracer protocols::frag_picker::scores::trAdaptiveScoreHistogram ( "fragment.picking.scores.AdaptiveScoreHistogram"  )
static
static basic::Tracer protocols::frag_picker::scores::trAmbigCSScore ( "protocols.frag_picker.scores.AmbigCSScore"  )
static
static basic::Tracer protocols::frag_picker::scores::trAtomBasedConstraintsScore ( "fragment.picking.scores.AtomBasedConstraintsScore"  )
static
static basic::Tracer protocols::frag_picker::scores::trAtomPairConstraintsScore ( "fragment.picking.scores.AtomPairConstraintsScore"  )
static
static basic::Tracer protocols::frag_picker::scores::trCSScore ( "protocols.frag_picker.scores.CSScore"  )
static
static basic::Tracer protocols::frag_picker::scores::trDihedralConstraintsScore ( "fragment.picking.scores.DihedralConstraintsScore"  )
static
static basic::Tracer protocols::frag_picker::scores::trDMEScore ( "protocols.frag_picker.scores.FragmentDME"  )
static
static basic::Tracer protocols::frag_picker::scores::trGunnCost ( "core.fragment.GunnCost"  )
static
static basic::Tracer protocols::frag_picker::scores::trGunnScore ( "protocols.frag_picker.scores.GunnCostScore"  )
static
static basic::Tracer protocols::frag_picker::scores::trInterbondAngleScore ( "fragment.picking.scores.InterbondAngleScore"  )
static
static basic::Tracer protocols::frag_picker::scores::trJCoupling ( "protocols.frag_picker.scores.JCoupling"  )
static
static basic::Tracer protocols::frag_picker::scores::trPartialSecondarySimilarity ( "protocols.frag_picker.scores.PartialSecondarySimilarity"  )
static
static basic::Tracer protocols::frag_picker::scores::trPhiPsiRmsd ( "protocols.frag_picker.scores.PhiPsiRmsd"  )
static
static basic::Tracer protocols::frag_picker::scores::trProfScore ( "protocols.frag_picker.scores.ProfileScore"  )
static
static basic::Tracer protocols::frag_picker::scores::trProfScore ( "protocols.frag_picker.scores.ScoreEValuator"  )
static
static basic::Tracer protocols::frag_picker::scores::trProfScoreBlosum62 ( "protocols.frag_picker.scores.ProfileScoreBlosum62"  )
static
static basic::Tracer protocols::frag_picker::scores::trProfScoreDistWeight ( "protocols.frag_picker.scores.ProfileScoreDistWeight"  )
static
static basic::Tracer protocols::frag_picker::scores::trProfScoreL1 ( "protocols.frag_picker.scores.ProfileScoreStructL1"  )
static
static basic::Tracer protocols::frag_picker::scores::trProfScoreL1 ( "protocols.frag_picker.scores.ProfileScoreL1"  )
static
static basic::Tracer protocols::frag_picker::scores::trProfScoreSubMatrix ( "protocols.frag_picker.scores.ProfileScoreSubMatrix"  )
static
static basic::Tracer protocols::frag_picker::scores::trRDCScore ( "protocols.frag_picker.scores.RDCScore"  )
static
static basic::Tracer protocols::frag_picker::scores::trRmsScore ( "protocols.frag_picker.scores.FragmentCrmsdResDepth"  )
static
static basic::Tracer protocols::frag_picker::scores::trRmsScore ( "protocols.frag_picker.scores.FragmentAllAtomCrmsd"  )
static
static basic::Tracer protocols::frag_picker::scores::trRmsScore ( "protocols.frag_picker.scores.FragmentCrmsd"  )
static
static basic::Tracer protocols::frag_picker::scores::trSecondarySimilarity ( "protocols.frag_picker.scores.SecondarySimilarity"  )
static
static basic::Tracer protocols::frag_picker::scores::trTalosSSSimilarity ( "protocols.frag_picker.scores.TalosSSSimilarity"  )
static
static basic::Tracer protocols::frag_picker::scores::trTmScore ( "protocols.frag_picker.scores.FragmentChunkCrms"  )
static