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core::select::residue_selector::ResidueInMembraneSelector Class Reference

The ResidueInMembraneSelector returns a ResidueSubset, i.e. a utility::vector1< bool > containing 'true' for residue positions which are either in or out of the membrane. default is in. More...

#include <ResidueInMembraneSelector.hh>

Inheritance diagram for core::select::residue_selector::ResidueInMembraneSelector:
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Public Member Functions

 ResidueInMembraneSelector ()
 
 ~ResidueInMembraneSelector () override
 
 ResidueInMembraneSelector (ResidueInMembraneSelector const &src)
 Copy constructor. More...
 
ResidueSelectorOP clone () const override
 Clone operator. More...
 
ResidueSubset apply (core::pose::Pose const &pose) const override
 Return a ResidueSubset indicating a selection of Residues from the input Pose; the ResidueSubset is an array of booleans where a value of "true" for position i indicates that residue i is a part of the selected subset – and a value of "false" would indicate that it is not. More...
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
 Initialize any data members of this instance from an input tag and a DataMap object. More...
 
std::string get_name () const override
 
void set_select_in_membrane (bool const &select_in_membrane)
 
- Public Member Functions inherited from core::select::residue_selector::ResidueSelector
 ResidueSelector ()
 Constructor. More...
 
 ~ResidueSelector () override
 Destructor. More...
 
virtual void provide_citation_info (basic::citation_manager::CitationCollectionList &) const
 Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...
 

Static Public Member Functions

static std::string class_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Private Attributes

bool select_in_membrane_
 

Detailed Description

The ResidueInMembraneSelector returns a ResidueSubset, i.e. a utility::vector1< bool > containing 'true' for residue positions which are either in or out of the membrane. default is in.

Constructor & Destructor Documentation

core::select::residue_selector::ResidueInMembraneSelector::ResidueInMembraneSelector ( )
core::select::residue_selector::ResidueInMembraneSelector::~ResidueInMembraneSelector ( )
override
core::select::residue_selector::ResidueInMembraneSelector::ResidueInMembraneSelector ( ResidueInMembraneSelector const &  src)

Copy constructor.

Member Function Documentation

ResidueSubset core::select::residue_selector::ResidueInMembraneSelector::apply ( core::pose::Pose const &  pose) const
overridevirtual

Return a ResidueSubset indicating a selection of Residues from the input Pose; the ResidueSubset is an array of booleans where a value of "true" for position i indicates that residue i is a part of the selected subset – and a value of "false" would indicate that it is not.

Implements core::select::residue_selector::ResidueSelector.

References core::pose::Pose::conformation(), core::conformation::Residue::is_protein(), core::conformation::Conformation::membrane_info(), core::pose::Pose::residue(), select_in_membrane_, core::conformation::Residue::seqpos(), core::conformation::membrane::thickness, and core::pose::Pose::total_residue().

std::string core::select::residue_selector::ResidueInMembraneSelector::class_name ( )
static
ResidueSelectorOP core::select::residue_selector::ResidueInMembraneSelector::clone ( ) const
overridevirtual

Clone operator.

Copy this object and return an owning pointer to the new object.

Implements core::select::residue_selector::ResidueSelector.

std::string core::select::residue_selector::ResidueInMembraneSelector::get_name ( ) const
overridevirtual
void core::select::residue_selector::ResidueInMembraneSelector::parse_my_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap &  datacache 
)
overridevirtual

Initialize any data members of this instance from an input tag and a DataMap object.

Noop implementation in the base class in the case that a derived class has no need to read data from an input tag

Reimplemented from core::select::residue_selector::ResidueSelector.

References set_select_in_membrane().

void core::select::residue_selector::ResidueInMembraneSelector::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void core::select::residue_selector::ResidueInMembraneSelector::set_select_in_membrane ( bool const &  select_in_membrane)

References select_in_membrane_.

Referenced by parse_my_tag().

Member Data Documentation

bool core::select::residue_selector::ResidueInMembraneSelector::select_in_membrane_
private

Referenced by apply(), and set_select_in_membrane().


The documentation for this class was generated from the following files: