#include <BackrubSidechainMover.hh>

Inheritance diagram for protocols::backrub::BackrubSidechainMover:

[legend]

Public Member Functions
	BackrubSidechainMover ()

	BackrubSidechainMover (BackrubSidechainMover const &mover)

	~BackrubSidechainMover () override

protocols::moves::MoverOP	clone () const override
	Return a clone of the Mover object. More...

protocols::moves::MoverOP	fresh_instance () const override
	Generates a new Mover object freshly created with the default ctor. More...

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data) override
	Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing. More...

void	update_segments (core::pose::Pose const &pose)

void	initialize_simulation (core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover, core::Size cycle) override
	Callback executed before any Monte Carlo trials are attempted. More...

void	apply (core::pose::Pose &pose) override
	Main Method. More...

void	observe_after_metropolis (protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover) override
	callback after the Metropolis criterion is evaluated More...

void	finalize_simulation (core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover) override
	Callback executed after all Monte Carlo trials are completed. More...

void	set_pivot_residues (utility::vector1< core::Size > const &pivot_residues)

void	set_pivot_residue_selector (core::select::residue_selector::ResidueSelectorCOP pivot_residues)

core::pack::task::TaskFactoryCOP	task_factory () const

void	set_task_factory (core::pack::task::TaskFactoryOP task_factory)

core::Real	prob_uniform () const
	get the probability of uniformly sampling chi angles More...

void	set_prob_uniform (core::Real prob_uniform)
	set the probability of uniformly sampling chi angles More...

core::Real	prob_withinrot () const
	get the probability of sampling within the same rotamer More...

void	set_prob_withinrot (core::Real prob_withinrot)
	set the probability of sampling within the same rotamer More...

core::Real	prob_random_pert_current () const

void	set_prob_random_pert_current (core::Real prob_pert)

bool	preserve_detailed_balance () const override
	get whether detailed balance is preserved More...

void	set_preserve_detailed_balance (bool preserve_detailed_balance) override
	set whether detailed balance is preserved More...

bool	require_mm_bend () const
	get whether to exit during initialize_simulation if the mm_bend term isn't turned on More...

void	set_require_mm_bend (bool require_mm_bend)
	set whether to exit during initialize_simulation if the mm_bend term isn't turned on More...

utility::vector1< core::id::TorsionID_Range >	torsion_id_ranges (core::pose::Pose &pose) override
	get the TorsionIDs perturbed by the mover during moves, along with their ranges More...

bool	record_statistics () const
	get whether to record mover statistics or not More...

void	set_record_statistics (bool record_statistics)
	set whether to record mover statistics or not More...

std::string const &	statistics_filename () const
	get filename for statistics output More...

void	set_statistics_filename (std::string const &statistics_filename)
	set filename for statistics output More...

void	reset_statistics ()

void	output_statistics (std::ostream &out)

std::string	get_name () const override
	Each derived class must specify its name. The class name. More...

Public Member Functions inherited from protocols::canonical_sampling::ThermodynamicMover
	ThermodynamicMover ()
	Default constructor. More...

	~ThermodynamicMover () override
	Default destructor. More...

core::Real	last_proposal_density_ratio () override
	Return the proposal density ratio for last apply method. More...

virtual bool	is_multi_trial ()
	Return true if the move performs multiple trials on each apply. More...

virtual core::Real	last_inner_score_delta_over_temperature ()
	If this is a multi-trial move, return the change in internal score/temperature caused by the last call to apply(). More...

virtual protocols::canonical_sampling::MetropolisHastingsMoverAP	metropolis_hastings_mover ()
	If this is a multi-trial move, return the MetropolisHastingsMover being used internally. More...

virtual void	set_metropolis_hastings_mover (protocols::canonical_sampling::MetropolisHastingsMoverAP metropolis_hastings_mover)
	If this is a multi-trial move, set the MetropolisHastingsMover to be used internally. More...

virtual utility::vector1< core::id::DOF_ID_Range >	dof_id_ranges (core::pose::Pose &pose)
	Return a list specifying which degrees of freedom may be perturbed by apply(), and the in what range each perturbation may be. More...

Public Member Functions inherited from protocols::moves::Mover
	Mover ()

virtual MoverOP	create ()

MoverCOP	get_self_ptr () const

MoverOP	get_self_ptr ()

MoverCAP	get_self_weak_ptr () const

MoverAP	get_self_weak_ptr ()

	Mover (std::string const &type_name)
	sets the type for a mover; name_ has been removed (2010/05/14) More...

virtual void	test_move (Pose &pose)
	: Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More...

virtual bool	reinitialize_for_each_job () const
	Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More...

virtual bool	reinitialize_for_new_input () const
	Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More...

MoverStatus	get_last_move_status () const
	end parser interface, start Job Distributor interface///////////// More...

void	reset_status ()
	resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More...

virtual core::pose::PoseOP	get_additional_output ()
	Mechanism by which a mover may return multiple output poses from a single input pose. More...

void	set_type (std::string const &setting)
	Set the 'type' string. More...

std::string	get_type () const

void	type (const std::string &type_in)
	Set the 'type' string. More...

std::string const &	type () const
	Get the set 'type' string. More...

virtual void	set_input_pose (PoseCOP pose)
	setter for poses contained for rms More...

virtual void	set_native_pose (PoseCOP pose)
	setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More...

PoseCOP	get_input_pose () const

PoseCOP	get_native_pose () const

void	set_current_job (protocols::jobdist::BasicJobCOP job)

jobdist::BasicJobCOP	get_current_job () const

virtual void	set_current_tag (std::string const &new_tag)

std::string	get_current_tag () const
	A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More...

virtual void	show (std::ostream &output=std::cout) const
	Outputs details about the Mover, including current settings. More...

virtual void	clear_info ()
	Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More...

virtual Strings &	info ()
	non-const accessor More...

virtual Strings const &	info () const
	const accessor More...

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	mover_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Static Public Member Functions inherited from protocols::moves::Mover
static std::string	name ()

static void	register_options ()
	Overload this static method if you access options within the mover. More...

Private Member Functions
void	setup_histograms ()

void	record_histograms (bool accept)

void	update_type ()

Private Attributes
protocols::backrub::BackrubMoverOP	backrub_mover_

protocols::simple_moves::sidechain_moves::SidechainMoverOP	sidechain_mover_

utility::vector1< core::Size >	valid_segments_

core::Size	last_valid_segment_index_

core::Real	last_chi1_pre_

core::Real	last_chi1_post_

bool	record_statistics_

std::string	statistics_filename_

utility::vector1< numeric::MultiDimensionalHistogram >	proposal_hists_

utility::vector1< numeric::MultiDimensionalHistogram >	accept_hists_

Additional Inherited Members
Public Types inherited from protocols::moves::Mover
typedef utility::tag::TagCOP	TagCOP

typedef core::pose::Pose	Pose

typedef core::pose::PoseCOP	PoseCOP

typedef std::list< std::string >	Strings

Protected Member Functions inherited from protocols::moves::Mover
void	set_last_move_status (MoverStatus status)
	nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More...

Constructor & Destructor Documentation

◆ BackrubSidechainMover() [1/2]

protocols::backrub::BackrubSidechainMover::BackrubSidechainMover ( )

References backrub_mover_.

◆ BackrubSidechainMover() [2/2]

protocols::backrub::BackrubSidechainMover::BackrubSidechainMover ( BackrubSidechainMover const & mover )

References backrub_mover_, and sidechain_mover_.

◆ ~BackrubSidechainMover()

protocols::backrub::BackrubSidechainMover::~BackrubSidechainMover ( )

overridedefault

Member Function Documentation

◆ apply()

void protocols::backrub::BackrubSidechainMover::apply ( core::pose::Pose & )

overridevirtual

Main Method.

Implements protocols::moves::Mover.

References backrub_mover_, core::pose::Pose::chi(), protocols::backrub::BackrubSegment::end_atomid(), core::pose::Pose::fold_tree(), last_chi1_post_, last_chi1_pre_, last_valid_segment_index_, core::scoring::rg, core::id::AtomID::rsd(), sidechain_mover_, protocols::backrub::BackrubSegment::start_atomid(), update_segments(), update_type(), and valid_segments_.

◆ clone()

protocols::moves::MoverOP protocols::backrub::BackrubSidechainMover::clone ( ) const

overridevirtual

Return a clone of the Mover object.

clone is meant to return an OP'ed deep copy of this object. This really should be a pure virtual in the base class, but adding pure virtuals to Mover would massively disrupt the code. This default implementation crashes at runtime instead of compiletime if you try to call it. If this code is causing you problems, your Mover needs to override this function.

Reimplemented from protocols::moves::Mover.

◆ finalize_simulation()

void protocols::backrub::BackrubSidechainMover::finalize_simulation	(	core::pose::Pose &	pose,
		protocols::canonical_sampling::MetropolisHastingsMover const &	metropolis_hastings_mover
	)

overridevirtual

Callback executed after all Monte Carlo trials are completed.

Reimplemented from protocols::canonical_sampling::ThermodynamicMover.

References protocols::abinitio::filename(), protocols::canonical_sampling::ThermodynamicMover::metropolis_hastings_mover(), output_statistics(), record_statistics_, and statistics_filename().

◆ fresh_instance()

protocols::moves::MoverOP protocols::backrub::BackrubSidechainMover::fresh_instance ( ) const

overridevirtual

Generates a new Mover object freshly created with the default ctor.

fresh_instance is meant to return a new object of this class, created with the default constructor. This really should be a pure virtual in the base class, but adding pure virtuals to Mover would massively disrupt the code. This default implementation crashes at runtime instead of compiletime if you try to call it. If this code is causing you problems, your Mover needs to override this function. This is used by the August 08 job distributor.

Reimplemented from protocols::moves::Mover.

◆ get_name()

std::string protocols::backrub::BackrubSidechainMover::get_name ( ) const

overridevirtual

Each derived class must specify its name. The class name.

Implements protocols::moves::Mover.

References mover_name().

◆ initialize_simulation()

void protocols::backrub::BackrubSidechainMover::initialize_simulation	(	core::pose::Pose &	pose,
		protocols::canonical_sampling::MetropolisHastingsMover const &	metropolis_hastings_mover,
		core::Size	cycle
	)

overridevirtual

Callback executed before any Monte Carlo trials are attempted.

Reimplemented from protocols::canonical_sampling::ThermodynamicMover.

References backrub_mover_, core::pose::Pose::fold_tree(), protocols::canonical_sampling::ThermodynamicMover::metropolis_hastings_mover(), record_statistics_, reset_statistics(), sidechain_mover_, update_segments(), and valid_segments_.

◆ mover_name()

std::string protocols::backrub::BackrubSidechainMover::mover_name ( )

static

Referenced by get_name(), protocols::backrub::BackrubSidechainMoverCreator::keyname(), and provide_xml_schema().

◆ observe_after_metropolis()

void protocols::backrub::BackrubSidechainMover::observe_after_metropolis ( protocols::canonical_sampling::MetropolisHastingsMover const & metropolis_hastings_mover )

overridevirtual

callback after the Metropolis criterion is evaluated

Reimplemented from protocols::canonical_sampling::ThermodynamicMover.

References protocols::canonical_sampling::ThermodynamicMover::metropolis_hastings_mover(), record_histograms(), and record_statistics_.

◆ output_statistics()

void protocols::backrub::BackrubSidechainMover::output_statistics ( std::ostream & out )

References accept_hists_, core::conformation::membrane::out, and proposal_hists_.

Referenced by finalize_simulation().

◆ parse_my_tag()

void protocols::backrub::BackrubSidechainMover::parse_my_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	data
	)

overridevirtual

Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing.

Some movers need not be parsed, so we shouldn't force people to reimplement this method. However, we should be chatty about the fact that someone is using a RosettaScripts interface to a mover which didn't define parse_my_tag()

Reimplemented from protocols::moves::Mover.

References core::pose::get_resnum_selector(), preserve_detailed_balance(), prob_random_pert_current(), prob_uniform(), prob_withinrot(), record_statistics(), require_mm_bend(), set_pivot_residue_selector(), set_preserve_detailed_balance(), set_prob_random_pert_current(), set_prob_uniform(), set_prob_withinrot(), set_record_statistics(), set_require_mm_bend(), set_statistics_filename(), set_task_factory(), statistics_filename(), and valid_segments_.

◆ preserve_detailed_balance()

bool protocols::backrub::BackrubSidechainMover::preserve_detailed_balance ( ) const

overridevirtual

get whether detailed balance is preserved

Implements protocols::canonical_sampling::ThermodynamicMover.

References backrub_mover_, and sidechain_mover_.

Referenced by parse_my_tag(), and set_preserve_detailed_balance().

◆ prob_random_pert_current()

core::Real protocols::backrub::BackrubSidechainMover::prob_random_pert_current ( ) const

References sidechain_mover_.

Referenced by parse_my_tag().

◆ prob_uniform()

core::Real protocols::backrub::BackrubSidechainMover::prob_uniform ( ) const

get the probability of uniformly sampling chi angles

References sidechain_mover_.

Referenced by parse_my_tag(), and set_prob_uniform().

◆ prob_withinrot()

core::Real protocols::backrub::BackrubSidechainMover::prob_withinrot ( ) const

get the probability of sampling within the same rotamer

References sidechain_mover_.

Referenced by parse_my_tag(), and set_prob_withinrot().

◆ provide_xml_schema()

void protocols::backrub::BackrubSidechainMover::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References core::pack::task::attributes_for_parse_task_operations_w_factory(), mover_name(), and protocols::moves::xsd_type_definition_w_attributes().

Referenced by protocols::backrub::BackrubSidechainMoverCreator::provide_xml_schema().

◆ record_histograms()

void protocols::backrub::BackrubSidechainMover::record_histograms ( bool accept )

private

References accept_hists_, backrub_mover_, last_chi1_post_, last_chi1_pre_, last_valid_segment_index_, proposal_hists_, and setup_histograms().

Referenced by observe_after_metropolis().

◆ record_statistics()

bool protocols::backrub::BackrubSidechainMover::record_statistics ( ) const

get whether to record mover statistics or not

References record_statistics_.

Referenced by parse_my_tag(), and set_record_statistics().

◆ require_mm_bend()

bool protocols::backrub::BackrubSidechainMover::require_mm_bend ( ) const

get whether to exit during initialize_simulation if the mm_bend term isn't turned on

References backrub_mover_.

Referenced by parse_my_tag(), and set_require_mm_bend().

◆ reset_statistics()

void protocols::backrub::BackrubSidechainMover::reset_statistics ( )

References setup_histograms().

Referenced by initialize_simulation(), set_record_statistics(), and update_segments().

◆ set_pivot_residue_selector()

void protocols::backrub::BackrubSidechainMover::set_pivot_residue_selector ( core::select::residue_selector::ResidueSelectorCOP pivot_residues )

References backrub_mover_.

Referenced by parse_my_tag().

◆ set_pivot_residues()

void protocols::backrub::BackrubSidechainMover::set_pivot_residues ( utility::vector1< core::Size > const & pivot_residues )

References backrub_mover_.

◆ set_preserve_detailed_balance()

void protocols::backrub::BackrubSidechainMover::set_preserve_detailed_balance ( bool preserve_detailed_balance )

overridevirtual

set whether detailed balance is preserved

Implements protocols::canonical_sampling::ThermodynamicMover.

References backrub_mover_, preserve_detailed_balance(), and sidechain_mover_.

Referenced by parse_my_tag().

◆ set_prob_random_pert_current()

void protocols::backrub::BackrubSidechainMover::set_prob_random_pert_current ( core::Real prob_pert )

References sidechain_mover_.

Referenced by parse_my_tag().

◆ set_prob_uniform()

void protocols::backrub::BackrubSidechainMover::set_prob_uniform ( core::Real prob_uniform )

set the probability of uniformly sampling chi angles

References prob_uniform(), and sidechain_mover_.

Referenced by parse_my_tag().

◆ set_prob_withinrot()

void protocols::backrub::BackrubSidechainMover::set_prob_withinrot ( core::Real prob_withinrot )

set the probability of sampling within the same rotamer

References prob_withinrot(), and sidechain_mover_.

Referenced by parse_my_tag().

◆ set_record_statistics()

void protocols::backrub::BackrubSidechainMover::set_record_statistics ( bool record_statistics )

set whether to record mover statistics or not

References record_statistics(), record_statistics_, and reset_statistics().

Referenced by parse_my_tag().

◆ set_require_mm_bend()

void protocols::backrub::BackrubSidechainMover::set_require_mm_bend ( bool require_mm_bend )

set whether to exit during initialize_simulation if the mm_bend term isn't turned on

References backrub_mover_, and require_mm_bend().

Referenced by parse_my_tag().

◆ set_statistics_filename()

void protocols::backrub::BackrubSidechainMover::set_statistics_filename ( std::string const & statistics_filename )

set filename for statistics output

References statistics_filename(), and statistics_filename_.

Referenced by parse_my_tag().

◆ set_task_factory()

void protocols::backrub::BackrubSidechainMover::set_task_factory ( core::pack::task::TaskFactoryOP task_factory )

References sidechain_mover_, and task_factory().

Referenced by parse_my_tag().

◆ setup_histograms()

void protocols::backrub::BackrubSidechainMover::setup_histograms ( )

private

References accept_hists_, backrub_mover_, core::conformation::Residue::name3(), core::pose::Pose::pdb_info(), proposal_hists_, record_statistics_, core::pose::Pose::residue(), and valid_segments_.

Referenced by record_histograms(), and reset_statistics().

◆ statistics_filename()

std::string const & protocols::backrub::BackrubSidechainMover::statistics_filename ( ) const

get filename for statistics output

References statistics_filename_.

Referenced by finalize_simulation(), parse_my_tag(), and set_statistics_filename().

◆ task_factory()

core::pack::task::TaskFactoryCOP protocols::backrub::BackrubSidechainMover::task_factory ( ) const

References sidechain_mover_.

Referenced by set_task_factory().

◆ torsion_id_ranges()

utility::vector1< core::id::TorsionID_Range > protocols::backrub::BackrubSidechainMover::torsion_id_ranges ( core::pose::Pose & pose )

overridevirtual

get the TorsionIDs perturbed by the mover during moves, along with their ranges

Implements protocols::canonical_sampling::ThermodynamicMover.

◆ update_segments()

void protocols::backrub::BackrubSidechainMover::update_segments ( core::pose::Pose const & pose )

References core::conformation::Residue::atom_name(), core::id::AtomID::atomno(), backrub_mover_, protocols::backrub::BackrubSegment::end_atomid(), core::pose::Pose::fold_tree(), record_statistics_, reset_statistics(), core::pose::Pose::residue(), core::id::AtomID::rsd(), sidechain_mover_, protocols::backrub::BackrubSegment::size(), protocols::backrub::BackrubSegment::start_atomid(), and valid_segments_.

Referenced by apply(), and initialize_simulation().

◆ update_type()

void protocols::backrub::BackrubSidechainMover::update_type ( )

private

References last_chi1_post_, last_chi1_pre_, protocols::motifs::mt(), sidechain_mover_, and protocols::moves::Mover::type().

Referenced by apply().

Member Data Documentation

◆ accept_hists_

utility::vector1<numeric::MultiDimensionalHistogram> protocols::backrub::BackrubSidechainMover::accept_hists_

private

Referenced by output_statistics(), record_histograms(), and setup_histograms().

◆ backrub_mover_

protocols::backrub::BackrubMoverOP protocols::backrub::BackrubSidechainMover::backrub_mover_

private

Referenced by apply(), BackrubSidechainMover(), initialize_simulation(), preserve_detailed_balance(), record_histograms(), require_mm_bend(), set_pivot_residue_selector(), set_pivot_residues(), set_preserve_detailed_balance(), set_require_mm_bend(), setup_histograms(), and update_segments().

◆ last_chi1_post_

core::Real protocols::backrub::BackrubSidechainMover::last_chi1_post_

private

Referenced by apply(), record_histograms(), and update_type().

◆ last_chi1_pre_

core::Real protocols::backrub::BackrubSidechainMover::last_chi1_pre_

private

Referenced by apply(), record_histograms(), and update_type().

◆ last_valid_segment_index_

core::Size protocols::backrub::BackrubSidechainMover::last_valid_segment_index_

private

Referenced by apply(), and record_histograms().

◆ proposal_hists_

utility::vector1<numeric::MultiDimensionalHistogram> protocols::backrub::BackrubSidechainMover::proposal_hists_

private

Referenced by output_statistics(), record_histograms(), and setup_histograms().

◆ record_statistics_

bool protocols::backrub::BackrubSidechainMover::record_statistics_

private

Referenced by finalize_simulation(), initialize_simulation(), observe_after_metropolis(), record_statistics(), set_record_statistics(), setup_histograms(), and update_segments().

◆ sidechain_mover_

protocols::simple_moves::sidechain_moves::SidechainMoverOP protocols::backrub::BackrubSidechainMover::sidechain_mover_

private

Referenced by apply(), BackrubSidechainMover(), initialize_simulation(), preserve_detailed_balance(), prob_random_pert_current(), prob_uniform(), prob_withinrot(), set_preserve_detailed_balance(), set_prob_random_pert_current(), set_prob_uniform(), set_prob_withinrot(), set_task_factory(), task_factory(), update_segments(), and update_type().

◆ statistics_filename_

std::string protocols::backrub::BackrubSidechainMover::statistics_filename_

private

Referenced by set_statistics_filename(), and statistics_filename().

◆ valid_segments_

utility::vector1<core::Size> protocols::backrub::BackrubSidechainMover::valid_segments_

private

Referenced by apply(), initialize_simulation(), parse_my_tag(), setup_histograms(), and update_segments().

The documentation for this class was generated from the following files:

src/protocols/backrub/BackrubSidechainMover.hh
src/protocols/backrub/BackrubSidechainMover.cc

Public Member Functions

Static Public Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Constructor & Destructor Documentation

◆ BackrubSidechainMover() [1/2]

◆ BackrubSidechainMover() [2/2]

◆ ~BackrubSidechainMover()

Member Function Documentation

◆ apply()

◆ clone()

◆ finalize_simulation()

◆ fresh_instance()

◆ get_name()

◆ initialize_simulation()

◆ mover_name()

◆ observe_after_metropolis()

◆ output_statistics()

◆ parse_my_tag()

◆ preserve_detailed_balance()

◆ prob_random_pert_current()

◆ prob_uniform()

◆ prob_withinrot()

◆ provide_xml_schema()

◆ record_histograms()

◆ record_statistics()

◆ require_mm_bend()

◆ reset_statistics()

◆ set_pivot_residue_selector()

◆ set_pivot_residues()

◆ set_preserve_detailed_balance()

◆ set_prob_random_pert_current()

◆ set_prob_uniform()

◆ set_prob_withinrot()

◆ set_record_statistics()

◆ set_require_mm_bend()

◆ set_statistics_filename()

◆ set_task_factory()

◆ setup_histograms()

◆ statistics_filename()

◆ task_factory()

◆ torsion_id_ranges()

◆ update_segments()

◆ update_type()

Member Data Documentation

◆ accept_hists_

◆ backrub_mover_

◆ last_chi1_post_

◆ last_chi1_pre_

◆ last_valid_segment_index_

◆ proposal_hists_

◆ record_statistics_

◆ sidechain_mover_

◆ statistics_filename_

◆ valid_segments_