protocols::ligand_docking::CompleteConnectionsFilter Class Reference

#include <CompleteConnectionsFilter.hh>

Inheritance diagram for protocols::ligand_docking::CompleteConnectionsFilter:

Public Member Functions
	CompleteConnectionsFilter ()
	CompleteConnectionsFilter (std::string const &chain)
	CompleteConnectionsFilter (CompleteConnectionsFilter const &init)
	~CompleteConnectionsFilter () override=default
bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...
protocols::filters::FilterOP	clone () const override
protocols::filters::FilterOP	fresh_instance () const override
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
std::string	name () const override
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	~Filter () override
virtual void	report (std::ostream &, core::pose::Pose const &) const
virtual core::Real	report_sm (core::pose::Pose const &) const
	used to report filter internals through a score or silent file More...
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real	score (core::pose::Pose &pose)
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
std::string	chain_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

CompleteConnectionsFilter() [1/3]

protocols::ligand_docking::CompleteConnectionsFilter::CompleteConnectionsFilter ( )

inline

CompleteConnectionsFilter() [2/3]

protocols::ligand_docking::CompleteConnectionsFilter::CompleteConnectionsFilter ( std::string const &  chain )

inline

CompleteConnectionsFilter() [3/3]

protocols::ligand_docking::CompleteConnectionsFilter::CompleteConnectionsFilter ( CompleteConnectionsFilter const &  init )

inline

~CompleteConnectionsFilter()

protocols::ligand_docking::CompleteConnectionsFilter::~CompleteConnectionsFilter ( )

overridedefault

Member Function Documentation

apply()

bool protocols::ligand_docking::CompleteConnectionsFilter::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References chain_, core::conformation::Conformation::chain_begin(), core::conformation::Conformation::chain_end(), protocols::ligand_docking::complete_connections_tracer(), core::pose::Pose::conformation(), core::sequence::end, core::pose::get_chain_id_from_chain(), core::conformation::Residue::has_incomplete_connection(), core::conformation::Residue::name(), core::pose::Pose::residue(), and protocols::loops::start.

class_name()

std::string protocols::ligand_docking::CompleteConnectionsFilter::class_name ( )

static

Referenced by protocols::ligand_docking::CompleteConnectionsFilterCreator::keyname(), name(), and provide_xml_schema().

clone()

protocols::filters::FilterOP protocols::ligand_docking::CompleteConnectionsFilter::clone ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

fresh_instance()

protocols::filters::FilterOP protocols::ligand_docking::CompleteConnectionsFilter::fresh_instance ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

name()

std::string protocols::ligand_docking::CompleteConnectionsFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

parse_my_tag()

void protocols::ligand_docking::CompleteConnectionsFilter::parse_my_tag ( utility::tag::TagCOP  , basic::datacache::DataMap &    )

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References chain_.

provide_xml_schema()

void protocols::ligand_docking::CompleteConnectionsFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::ligand_docking::CompleteConnectionsFilterCreator::provide_xml_schema().

Member Data Documentation

chain_

std::string protocols::ligand_docking::CompleteConnectionsFilter::chain_

private

Referenced by apply(), and parse_my_tag().

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The documentation for this class was generated from the following files:

• src/protocols/ligand_docking/CompleteConnectionsFilter.hh
• src/protocols/ligand_docking/CompleteConnectionsFilter.cc